mRNA_H-elongata_contig72003.14877.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72003.14877.1
Unique NamemRNA_H-elongata_contig72003.14877.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72003.14877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72003contigH-elongata_contig72003:676..1814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size657
Cds size657
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931121.3159716-CDS-H-elongata_contig72003:675..8461622931121.3159716-CDS-H-elongata_contig72003:675..846Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72003 676..846 -
1691679706.9852173-CDS-H-elongata_contig72003:675..8461691679706.9852173-CDS-H-elongata_contig72003:675..846Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72003 676..846 -
1622931121.3840036-CDS-H-elongata_contig72003:1328..18141622931121.3840036-CDS-H-elongata_contig72003:1328..1814Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72003 1329..1814 -
1691679706.99522-CDS-H-elongata_contig72003:1328..18141691679706.99522-CDS-H-elongata_contig72003:1328..1814Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72003 1329..1814 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72003.14877.1prot_H-elongata_contig72003.14877.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72003 676..1814 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72003.14877.1

>prot_H-elongata_contig72003.14877.1 ID=prot_H-elongata_contig72003.14877.1|Name=mRNA_H-elongata_contig72003.14877.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=219bp
EEEGEEGSTSQKEAVAKSSHIFPAVWMLTSDPLVDQAVRLRMPHLQSFFI
PIPPAAADNISGYANLVNVSGDDAVVSIRWVDVIERFLAVNHGADVIGVF
GEGTLPSPGLGRVVKSLGPVLGSSVPPTAILSRSRWETASDAGNPGSEKE
KGEWLSDKLLAQVWFNRAMLSAARRNGTGLHDDLVGGLPMLQVLQRLVRD
PSSLGALLVDGTSVVGSTH
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mRNA from alignment at H-elongata_contig72003:676..1814-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72003.14877.1 ID=mRNA_H-elongata_contig72003.14877.1|Name=mRNA_H-elongata_contig72003.14877.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1139bp|location=Sequence derived from alignment at H-elongata_contig72003:676..1814- (Himanthalia elongata Himel1 dioecious)
GAAGAAGAGGGAGAAGAGGGGTCTACATCCCAAAAAGAGGCGGTAGCGAA
ATCATCACATATCTTCCCCGCAGTGTGGATGCTCACCTCCGACCCTCTTG
TGGACCAAGCCGTGCGCTTGAGGATGCCGCACCTGCAATCCTTCTTCATC
CCCATACCTCCCGCCGCCGCTGACAACATCAGCGGGTACGCAAATCTCGT
CAATGTTAGCGGTGACGATGCCGTCGTCTCAATCCGTTGGGTCGACGTAA
TCGAGCGCTTCTTAGCGGTGAACCATGGCGCCGACGTCATCGGGGTCTTC
GGGGAGGGCACCCTGCCCAGCCCGGGACTTGGGAGGGTCGTGAAGTCTCT
GGGGCCGGTGCTCGGGAGCTCCGTGCCACCGACCGCGATCCTCTCGCGTT
CGCGCTGGGAAACCGCCTCCGACGCTGGAAATCCGGGGAGCGAGAAGGAG
AAGGGAGAGTGGCTATCAGACAAGCTTTTAGCTCAGGTGAGGGCCGTTTT
TACTTCTGTTCATTGTACACGTATTTGCTGCATGTTTGGCACCATACTGT
ATACGGTATTGGGCGCTCTCTGGGTGAAAAGGGAGAGGAGCTGAGAAGCG
GTGGATCATGGTAATTTGTCCGTGGTCTGCCGAGATACTTTGTAAGCTTG
TATTTTTCCACTCTAGGCCAAGCAGTAACCAAACGGGGCCGTTTCCTGTT
GCTGGAGACGTAAGGGTCTCGTGGGCACCCCAAGGCTACATACACACACA
CACACACACACACACACACACACACACTTGTCATGATGAGAGACAGAGTT
CCCGCAATGATTCGCTGTGGAGGCTTGGTCGCTGTTGTTCTCACCAACGT
TGATTACGCCAGGGAAGGTTTTGTCTTCCAGCTCCTGGTAAAGCACACTT
GTCCTACCTTAACCTACCAGTTAGCCGATCGTTGACGCACCCCCCCTCCC
TCCGTAACCAACCCCCAGGTCTGGTTCAACCGTGCGATGCTCTCCGCCGC
GCGCAGGAATGGCACGGGCCTCCACGACGATCTCGTGGGCGGCCTGCCGA
TGCTTCAGGTTCTCCAGCGGCTGGTCCGCGACCCCTCCTCACTCGGCGCG
TTGCTGGTGGACGGAACGAGCGTCGTCGGCTCGACGCAC
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Coding sequence (CDS) from alignment at H-elongata_contig72003:676..1814-

>mRNA_H-elongata_contig72003.14877.1 ID=mRNA_H-elongata_contig72003.14877.1|Name=mRNA_H-elongata_contig72003.14877.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1314bp|location=Sequence derived from alignment at H-elongata_contig72003:676..1814- (Himanthalia elongata Himel1 dioecious)
GAAGAAGAGGGAGAAGAGGGGTCTACATCCCAAAAAGAGGCGGTAGCGAA
ATCATCACATATCTTCCCCGCAGTGTGGATGCTCACCTCCGACCCTCTTG
TGGACCAAGCCGTGCGCTTGAGGATGCCGCACCTGCAATCCTTCTTCATC
CCCATACCTCCCGCCGCCGCTGACAACATCAGCGGGTACGCAAATCTCGT
CAATGTTAGCGGTGACGATGCCGTCGTCTCAATCCGTTGGGTCGACGTAA
TCGAGCGCTTCTTAGCGGTGAACCATGGCGCCGACGTCATCGGGGTCTTC
GGGGAGGGCACCCTGCCCAGCCCGGGACTTGGGAGGGTCGTGAAGTCTCT
GGGGCCGGTGCTCGGGAGCTCCGTGCCACCGACCGCGATCCTCTCGCGTT
CGCGCTGGGAAACCGCCTCCGACGCTGGAAATCCGGGGAGCGAGAAGGAG
AAGGGAGAGTGGCTATCAGACAAGCTTTTAGCTCAGGAAGAAGAGGGAGA
AGAGGGGTCTACATCCCAAAAAGAGGCGGTAGCGAAATCATCACATATCT
TCCCCGCAGTGTGGATGCTCACCTCCGACCCTCTTGTGGACCAAGCCGTG
CGCTTGAGGATGCCGCACCTGCAATCCTTCTTCATCCCCATACCTCCCGC
CGCCGCTGACAACATCAGCGGGTACGCAAATCTCGTCAATGTTAGCGGTG
ACGATGCCGTCGTCTCAATCCGTTGGGTCGACGTAATCGAGCGCTTCTTA
GCGGTGAACCATGGCGCCGACGTCATCGGGGTCTTCGGGGAGGGCACCCT
GCCCAGCCCGGGACTTGGGAGGGTCGTGAAGTCTCTGGGGCCGGTGCTCG
GGAGCTCCGTGCCACCGACCGCGATCCTCTCGCGTTCGCGCTGGGAAACC
GCCTCCGACGCTGGAAATCCGGGGAGCGAGAAGGAGAAGGGAGAGTGGCT
ATCAGACAAGCTTTTAGCTCAGGTCTGGTTCAACCGTGCGATGCTCTCCG
CCGCGCGCAGGAATGGCACGGGCCTCCACGACGATCTCGTGGGCGGCCTG
CCGATGCTTCAGGTTCTCCAGCGGCTGGTCCGCGACCCCTCCTCACTCGG
CGCGTTGCTGGTGGACGGAACGAGCGTCGTCGGCTCGACGCACGTCTGGT
TCAACCGTGCGATGCTCTCCGCCGCGCGCAGGAATGGCACGGGCCTCCAC
GACGATCTCGTGGGCGGCCTGCCGATGCTTCAGGTTCTCCAGCGGCTGGT
CCGCGACCCCTCCTCACTCGGCGCGTTGCTGGTGGACGGAACGAGCGTCG
TCGGCTCGACGCAC
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