mRNA_H-elongata_contig71969.14873.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71969.14873.1
Unique NamemRNA_H-elongata_contig71969.14873.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig71969.14873.1 vs. uniprot
Match: A0A6H5JV97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV97_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 8.640e-42
Identity = 75/104 (72.12%), Postives = 86/104 (82.69%), Query Frame = 1
Query:    1 MRALRPDRIIFALRKFVDDLLGEDYVYQPPFSMRSVYEDSSASTPILFPLFSGVDPAAWVEGLGREMDITTTNGLFFNMSMGQGYEAKAEYMTLKLAEKGGWIM 312
            +R LRPDRI FALRKFV  +LGE++V QPPFSMRSVYEDSSASTPILF LF G+DPAAWVEGLGREM+I+TTN +  N SMGQG E+KAE    K  +KGGW+M
Sbjct:  311 LRVLRPDRITFALRKFVSKVLGENFVAQPPFSMRSVYEDSSASTPILFLLFPGMDPAAWVEGLGREMNISTTNEMLSNTSMGQGQESKAERTIKKFVQKGGWVM 414          
BLAST of mRNA_H-elongata_contig71969.14873.1 vs. uniprot
Match: D7FW50_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW50_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 8.960e-42
Identity = 75/104 (72.12%), Postives = 86/104 (82.69%), Query Frame = 1
Query:    1 MRALRPDRIIFALRKFVDDLLGEDYVYQPPFSMRSVYEDSSASTPILFPLFSGVDPAAWVEGLGREMDITTTNGLFFNMSMGQGYEAKAEYMTLKLAEKGGWIM 312
            +R LRPDRI FALRKFV  +LGE++V QPPFSMRSVYEDSSASTPILF LF G+DPAAWVEGLGREM+I+TTN +  N SMGQG E+KAE    K  +KGGW+M
Sbjct: 3485 LRVLRPDRITFALRKFVSKVLGENFVAQPPFSMRSVYEDSSASTPILFLLFPGMDPAAWVEGLGREMNISTTNEMLSNTSMGQGQESKAERTIKKFGQKGGWVM 3588          
BLAST of mRNA_H-elongata_contig71969.14873.1 vs. uniprot
Match: A0A7S2CQA6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CQA6_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.110e-31
Identity = 59/104 (56.73%), Postives = 71/104 (68.27%), Query Frame = 1
Query:    1 MRALRPDRIIFALRKFVDDLLGEDYVYQPPFSMRSVYEDSSASTPILFPLFSGVDPAAWVEGLGREMDITTTNGLFFNMSMGQGYEAKAEYMTLKLAEKGGWIM 312
            +RA+RPDR+ FAL K+  D  G DYV+QPPF M+  Y +SSASTPI F LF GVDP  WVE LG++  IT   G F N+SMGQG E  AE     L+ KGGW+M
Sbjct:  154 LRAIRPDRLTFALEKYFSDTEGSDYVFQPPFDMKQTYIESSASTPIFFVLFPGVDPTTWVEDLGKQFGITLERGNFVNISMGQGQEKPAEAKLEDLSRKGGWVM 257          
BLAST of mRNA_H-elongata_contig71969.14873.1 vs. uniprot
Match: F0Y0Z0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0Z0_AURAN)

HSP 1 Score: 124 bits (310), Expect = 1.030e-30
Identity = 54/104 (51.92%), Postives = 77/104 (74.04%), Query Frame = 1
Query:    1 MRALRPDRIIFALRKFVDDLLGEDYVYQPPFSMRSVYEDSSASTPILFPLFSGVDPAAWVEGLGREMDITTTNGLFFNMSMGQGYEAKAEYMTLKLAEKGGWIM 312
            +RALRPDR+  ALR ++ + +G DYV+Q PF+M + Y+++S+ TP+ F LF GVDP  WVE LG+E++I+  NGLF N+SMGQG E  AE +  + A+ GGW+M
Sbjct: 3479 LRALRPDRVSTALRLYIGETMGNDYVFQAPFNMPATYDETSSQTPVFFVLFPGVDPTPWVEDLGKELNISQDNGLFCNISMGQGQEKPAEAVLERFAKTGGWVM 3582          
BLAST of mRNA_H-elongata_contig71969.14873.1 vs. uniprot
Match: K3W732_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W732_GLOUD)

HSP 1 Score: 121 bits (304), Expect = 6.620e-30
Identity = 59/104 (56.73%), Postives = 73/104 (70.19%), Query Frame = 1
Query:    1 MRALRPDRIIFALRKFVDDLLGEDYVYQPPFSMRSVYEDSSASTPILFPLFSGVDPAAWVEGLGREMDITTTNGLFFNMSMGQGYEAKAEYMTLKLAEKGGWIM 312
            +RALRPDR+  ALR F+ D LGE+YV QPPF+M + YE++++S PI F LF GVDP  WVE LGR   ++  NG F N+SMGQG EA A     KLA  GGWI+
Sbjct: 2899 LRALRPDRVTNALRTFILDSLGEEYVSQPPFNMEATYEETNSSIPIFFVLFPGVDPTPWVEKLGRAKGVSLENGNFINISMGQGQEAYAGESLKKLATDGGWII 3002          
BLAST of mRNA_H-elongata_contig71969.14873.1 vs. uniprot
Match: A0A482ST18_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482ST18_9ARCH)

HSP 1 Score: 120 bits (301), Expect = 1.680e-29
Identity = 55/103 (53.40%), Postives = 75/103 (72.82%), Query Frame = 1
Query:    1 MRALRPDRIIFALRKFVDDLLGEDYVYQPPFSMRSVYEDSSASTPILFPLFSGVDPAAWVEGLGREMDITTTNGLFFNMSMGQGYEAKAEYMTLKLAEKGGWI 309
            +R  R DR+ FAL ++V   LGED+V QPPF+M S Y  ++A TP LF L+ GVDP +WVE  GR M+IT+ NG+F N+SMGQG EA+A+ +  K+A+ GGW+
Sbjct: 2341 LRVFRADRVPFALVEYVKKTLGEDFVNQPPFNMASTYRFTTAQTPCLFVLYPGVDPTSWVEDFGRSMNITSENGMFANISMGQGQEARADGIIDKMAQTGGWV 2443          
BLAST of mRNA_H-elongata_contig71969.14873.1 vs. uniprot
Match: A0A3F2RYI7_9STRA (Glutamate dehydrogenase n=6 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RYI7_9STRA)

HSP 1 Score: 119 bits (299), Expect = 3.110e-29
Identity = 52/104 (50.00%), Postives = 73/104 (70.19%), Query Frame = 1
Query:    1 MRALRPDRIIFALRKFVDDLLGEDYVYQPPFSMRSVYEDSSASTPILFPLFSGVDPAAWVEGLGREMDITTTNGLFFNMSMGQGYEAKAEYMTLKLAEKGGWIM 312
            +R LRPDR+IFALR F+ +  G+  V QPPF M + Y+++SASTP+ F LF GVDP +WVEGLG++ D T   G   N+SMGQG E  A+ + +K + +G W++
Sbjct:  811 IRVLRPDRMIFALRSFLGETFGKQMVQQPPFDMEAAYQETSASTPMFFVLFPGVDPTSWVEGLGKKFDFTYERGNLINISMGQGQEGTADNVLMKFSREGNWVI 914          
BLAST of mRNA_H-elongata_contig71969.14873.1 vs. uniprot
Match: A0A482RXR9_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RXR9_9ARCH)

HSP 1 Score: 119 bits (297), Expect = 5.790e-29
Identity = 51/104 (49.04%), Postives = 74/104 (71.15%), Query Frame = 1
Query:    1 MRALRPDRIIFALRKFVDDLLGEDYVYQPPFSMRSVYEDSSASTPILFPLFSGVDPAAWVEGLGREMDITTTNGLFFNMSMGQGYEAKAEYMTLKLAEKGGWIM 312
            +RA+RPDR+  AL+ ++++ +G++YV+Q PF M   + ++S+ TP  F LF+GVDP  WVEGLG+EM +T  NG F N+SMGQG E  AE +    A+ GGW+M
Sbjct: 1858 LRAMRPDRVTTALKSWIEETMGKEYVFQKPFDMNGTFLETSSQTPTFFVLFAGVDPTPWVEGLGKEMGVTFENGNFKNISMGQGQEKPAEAVVESFAKNGGWVM 1961          
BLAST of mRNA_H-elongata_contig71969.14873.1 vs. uniprot
Match: A0A812R0J4_9DINO (DNAH9 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812R0J4_9DINO)

HSP 1 Score: 118 bits (295), Expect = 1.060e-28
Identity = 55/104 (52.88%), Postives = 73/104 (70.19%), Query Frame = 1
Query:    1 MRALRPDRIIFALRKFVDDLLGEDYVYQPPFSMRSVYEDSSASTPILFPLFSGVDPAAWVEGLGREMDITTTNGLFFNMSMGQGYEAKAEYMTLKLAEKGGWIM 312
            +RA+RPDR+  ALR ++ + LG+ YV QP FSM+ VY  S  + P+ F LF GVDP  WVE LG E  IT  NGLF N+SMGQG +++AE    +LA++GGW+M
Sbjct:  152 LRAMRPDRLPLALRSWISEELGDVYVKQPNFSMQQVYNISGPTVPVFFVLFPGVDPTTWVEALGAENGITEENGLFVNISMGQGQDSRAEAQLHRLAKEGGWLM 255          
BLAST of mRNA_H-elongata_contig71969.14873.1 vs. uniprot
Match: A0A8J2WZL2_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WZL2_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.480e-28
Identity = 50/102 (49.02%), Postives = 71/102 (69.61%), Query Frame = 1
Query:    7 ALRPDRIIFALRKFVDDLLGEDYVYQPPFSMRSVYEDSSASTPILFPLFSGVDPAAWVEGLGREMDITTTNGLFFNMSMGQGYEAKAEYMTLKLAEKGGWIM 312
            A+R DR+   ++K++ +  G++YV+QPPF MR  Y +S+ASTP+ F LF GVDP  W+E +G +   TT    F N+SMGQG EA AE M  K+A++GGWI+
Sbjct: 3068 AMRGDRVTMGMQKYISECYGDNYVFQPPFDMRQAYTESTASTPMFFVLFPGVDPTVWIEEIGEKFGFTTAKNNFINISMGQGQEAPAEAMIEKMAQEGGWIL 3169          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71969.14873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JV97_9PHAE8.640e-4272.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FW50_ECTSI8.960e-4272.12Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A7S2CQA6_9STRA1.110e-3156.73Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
F0Y0Z0_AURAN1.030e-3051.92Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
K3W732_GLOUD6.620e-3056.73Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A482ST18_9ARCH1.680e-2953.40Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A3F2RYI7_9STRA3.110e-2950.00Glutamate dehydrogenase n=6 Tax=Phytophthora kerno... [more]
A0A482RXR9_9ARCH5.790e-2949.04Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A812R0J4_9DINO1.060e-2852.88DNAH9 protein (Fragment) n=1 Tax=Symbiodinium sp. ... [more]
A0A8J2WZL2_9STRA1.480e-2849.02Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71969contigH-elongata_contig71969:1205..1708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.9
Seed ortholog evalue2.5e-36
Seed eggNOG ortholog2880.D7FW50
Preferred nameODA-DHCA
KEGG koko:K10408,ko:K10706,ko:K20285
KEGG Pathwayko05016,map05016
GOsGO:0005575,GO:0005623,GO:0005929,GO:0031514,GO:0042995,GO:0043226,GO:0044464,GO:0120025
EggNOG free text desc.Galactose oxidase, central domain
EggNOG OGsCOG5245@1,KOG1230@1,KOG1230@2759,KOG3595@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03021,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Exons2
Model size313
Cds size312
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931120.8277116-CDS-H-elongata_contig71969:1204..14481622931120.8277116-CDS-H-elongata_contig71969:1204..1448Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71969 1205..1448 +
1691679706.7843604-CDS-H-elongata_contig71969:1204..14481691679706.7843604-CDS-H-elongata_contig71969:1204..1448Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71969 1205..1448 +
1622931120.8742237-CDS-H-elongata_contig71969:1640..17081622931120.8742237-CDS-H-elongata_contig71969:1640..1708Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71969 1641..1708 +
1691679706.7976384-CDS-H-elongata_contig71969:1640..17081691679706.7976384-CDS-H-elongata_contig71969:1640..1708Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71969 1641..1708 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71969.14873.1prot_H-elongata_contig71969.14873.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71969 1205..1708 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71969.14873.1

>prot_H-elongata_contig71969.14873.1 ID=prot_H-elongata_contig71969.14873.1|Name=mRNA_H-elongata_contig71969.14873.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
MRALRPDRIIFALRKFVDDLLGEDYVYQPPFSMRSVYEDSSASTPILFPL
FSGVDPAAWVEGLGREMDITTTNGLFFNMSMGQGYEAKAEYMTLKLAEKG
GWIM
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mRNA from alignment at H-elongata_contig71969:1205..1708+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71969.14873.1 ID=mRNA_H-elongata_contig71969.14873.1|Name=mRNA_H-elongata_contig71969.14873.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=504bp|location=Sequence derived from alignment at H-elongata_contig71969:1205..1708+ (Himanthalia elongata Himel1 dioecious)
ATGAGAGCTCTTCGACCAGATAGGATCATTTTCGCTCTACGAAAGTTTGT GGACGATTTGTTGGGCGAGGATTATGTATACCAACCTCCCTTCTCGATGC GAAGTGTGTACGAGGACAGCTCCGCATCGACTCCGATCTTGTTTCCTCTA TTTTCCGGGGTAGACCCCGCGGCTTGGGTGGAGGGCCTTGGCCGGGAGAT GGATATCACGACGACAAACGGGCTTTTCTTTAACATGTCTATGGGTGAGT AGAAACTAATGCTTGCGGTCTTTCAATCGCCATCCTGATGAACCATCCTG ATGAACATCCATTGGGCAATCGGATGATAACAGTGGTGTATTACTTGGTG AATGTTTTCGTGCTTATCACCGGGGCGACTTCCCTCGCTCTTACCTTACT TATACTTATATTGCCTTCGTTGCACACAAATCACAGGTCAGGGCTACGAG GCTAAGGCGGAATATATGACCCTCAAATTGGCGGAGAAGGGCGGGTGGAT TATG
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Coding sequence (CDS) from alignment at H-elongata_contig71969:1205..1708+

>mRNA_H-elongata_contig71969.14873.1 ID=mRNA_H-elongata_contig71969.14873.1|Name=mRNA_H-elongata_contig71969.14873.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig71969:1205..1708+ (Himanthalia elongata Himel1 dioecious)
ATGAGAGCTCTTCGACCAGATAGGATCATTTTCGCTCTACGAAAGTTTGT
GGACGATTTGTTGGGCGAGGATTATGTATACCAACCTCCCTTCTCGATGC
GAAGTGTGTACGAGGACAGCTCCGCATCGACTCCGATCTTGTTTCCTCTA
TTTTCCGGGGTAGACCCCGCGGCTTGGGTGGAGGGCCTTGGCCGGGAGAT
GGATATCACGACGACAAACGGGCTTTTCTTTAACATGTCTATGGATGAGA
GCTCTTCGACCAGATAGGATCATTTTCGCTCTACGAAAGTTTGTGGACGA
TTTGTTGGGCGAGGATTATGTATACCAACCTCCCTTCTCGATGCGAAGTG
TGTACGAGGACAGCTCCGCATCGACTCCGATCTTGTTTCCTCTATTTTCC
GGGGTAGACCCCGCGGCTTGGGTGGAGGGCCTTGGCCGGGAGATGGATAT
CACGACGACAAACGGGCTTTTCTTTAACATGTCTATGGGTCAGGGCTACG
AGGCTAAGGCGGAATATATGACCCTCAAATTGGCGGAGAAGGGCGGGTGG
ATTATGGTCAGGGCTACGAGGCTAAGGCGGAATATATGACCCTCAAATTG
GCGGAGAAGGGCGGGTGGATTATG
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