mRNA_H-elongata_contig7193.14871.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7193.14871.1
Unique NamemRNA_H-elongata_contig7193.14871.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig7193.14871.1 vs. uniprot
Match: D8LRF9_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF9_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 1.110e-9
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 3 
Query:  489 AHNTSFVSGGVTSMLAVQTTSGTSMKALSCSFRGWKGAYVVLAAGDVEMDMCDFK 653
            A N SF      SMLAV+ TSG+SM+AL+CSF GW+G YVVL  G++EMD+CDF+
Sbjct:  877 AWNASFSVDDAPSMLAVEMTSGSSMRALACSFSGWEGPYVVLTGGELEMDLCDFR 931
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BLAST of mRNA_H-elongata_contig7193.14871.1 vs. uniprot
Match: A0A6H5JU65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU65_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.120e-9
Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = 3 
Query:  489 AHNTSFVSGGVTSMLAVQTTSGTSMKALSCSFRGWKGAYVVLAAGDVEMDMCDFKKS 659
            A N SF      SMLAV+ TSG+ MKAL+CSF GW+G YVVL  G++EMD+CDF+ S
Sbjct: 1083 AWNASFSVADAPSMLAVEMTSGSYMKALACSFSGWEGPYVVLTGGELEMDLCDFRGS 1139
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7193.14871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRF9_ECTSI1.110e-960.00Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
A0A6H5JU65_9PHAE1.120e-959.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7193contigH-elongata_contig7193:2885..6057 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size689
Cds size366
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931120.525043-UTR-H-elongata_contig7193:2884..28931622931120.525043-UTR-H-elongata_contig7193:2884..2893Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7193 2885..2893 +
1691679706.6424773-UTR-H-elongata_contig7193:2884..28931691679706.6424773-UTR-H-elongata_contig7193:2884..2893Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7193 2885..2893 +
1622931120.647642-UTR-H-elongata_contig7193:4631..46991622931120.647642-UTR-H-elongata_contig7193:4631..4699Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7193 4632..4699 +
1691679706.6965444-UTR-H-elongata_contig7193:4631..46991691679706.6965444-UTR-H-elongata_contig7193:4631..4699Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7193 4632..4699 +
1622931120.6665523-UTR-H-elongata_contig7193:5199..54141622931120.6665523-UTR-H-elongata_contig7193:5199..5414Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7193 5200..5414 +
1691679706.7103577-UTR-H-elongata_contig7193:5199..54141691679706.7103577-UTR-H-elongata_contig7193:5199..5414Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7193 5200..5414 +
1622931120.684264-UTR-H-elongata_contig7193:6026..60571622931120.684264-UTR-H-elongata_contig7193:6026..6057Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7193 6027..6057 +
1691679706.721243-UTR-H-elongata_contig7193:6026..60571691679706.721243-UTR-H-elongata_contig7193:6026..6057Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7193 6027..6057 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931120.5431712-CDS-H-elongata_contig7193:2893..31541622931120.5431712-CDS-H-elongata_contig7193:2893..3154Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7193 2894..3154 +
1691679706.6592503-CDS-H-elongata_contig7193:2893..31541691679706.6592503-CDS-H-elongata_contig7193:2893..3154Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7193 2894..3154 +
1622931120.5962782-CDS-H-elongata_contig7193:3758..38351622931120.5962782-CDS-H-elongata_contig7193:3758..3835Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7193 3759..3835 +
1691679706.6706812-CDS-H-elongata_contig7193:3758..38351691679706.6706812-CDS-H-elongata_contig7193:3758..3835Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7193 3759..3835 +
1622931120.6146166-CDS-H-elongata_contig7193:4603..46311622931120.6146166-CDS-H-elongata_contig7193:4603..4631Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7193 4604..4631 +
1691679706.6833496-CDS-H-elongata_contig7193:4603..46311691679706.6833496-CDS-H-elongata_contig7193:4603..4631Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7193 4604..4631 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7193.14871.1prot_H-elongata_contig7193.14871.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7193 2894..4631 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7193.14871.1

>prot_H-elongata_contig7193.14871.1 ID=prot_H-elongata_contig7193.14871.1|Name=mRNA_H-elongata_contig7193.14871.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
MSRNRAEGDGGAVNAIGADLLKLTECNMTANSCAGNGGGVNVAGTNLSAV
SSHFANNEADFDGGGLRGHARASLVLEDCQFEGNEGRMGGGISIMKSNLV
AKRCNISGNSANVFRQKTWRL*
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mRNA from alignment at H-elongata_contig7193:2885..6057+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7193.14871.1 ID=mRNA_H-elongata_contig7193.14871.1|Name=mRNA_H-elongata_contig7193.14871.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3173bp|location=Sequence derived from alignment at H-elongata_contig7193:2885..6057+ (Himanthalia elongata Himel1 dioecious)
AGAGTGACCATGTCTAGGAACCGCGCTGAGGGAGATGGCGGTGCGGTGAA
CGCGATCGGCGCCGACTTGTTGAAGTTGACAGAGTGCAATATGACCGCGA
ACTCGTGTGCGGGCAACGGGGGTGGCGTGAACGTTGCCGGGACAAACCTT
TCCGCGGTGTCGAGCCACTTCGCTAACAATGAGGCGGATTTCGATGGGGG
CGGACTGCGGGGGCATGCCAGGGCGAGCCTGGTGTTGGAGGACTGTCAGT
TTGAGGGTAACGAGGGGCGGGTGAGACTCGGCGATCTTATTATTTTAAAA
ATATTGTACTCTATTATATTATATTATATTATACTATACTATACGAGTAT
TCCATTACACACGGAGGAAGAAGAGACCTTATTATATCGGGGGTTAGGGT
TAGGGTTAGAATGACGTCGCGAGATTTGACGAGATTATGTCATTTGATAT
GGCCACATGACGTCATGACTACGTCGGCGTGAAAACTCTCATGTTGTTAA
GAAGGCGTGGATTTAAGGGTCTTAATAAGTTCATACTTAAGTATGTTTTA
AAATAAAAACGTGGCTTTTGATATACCTGGTAGGCTTTTGATACCTAGGG
ACCCTAACCCTAACCCTAACCTATAATAGGAACGTTTTAGAGGCGCTTGA
CGTTCTGGATATAACATTTCCCTTAATGTCATGCGCTGCTTTTATCCCTT
AATATCTTTAGGGCCGTCTACTAATAGTTCACTATTAATATAGTCTAATA
GTCTTATCTAGTCTGGTCTATCCCAATAGTCTATCCCAACCCACGGGCAC
TGCATCGCATCGCATCGCATCAAACCGACTGTCACCGTCATTGTCACCTT
CATCATCGCCATCGCCGACTGCAGATGGGGGGCGGCATCAGTATCATGAA
ATCGAATCTGGTAGCGAAGCGCTGTAACATCTCGGGAAACTCGGCCAATG
TGGACGGAGGAGGGCTGCAGGTTTTGCACTCGTCGATCGCCGAGCTAGCG
GGATGCCAGGTTTCCTCGAACACAGGTGCAGATACATTGAAGATATATTA
ATAGTATAGTATATTATCGCGACCTTTTGTAATGCAGTATAGTATAGTAT
AGTATATTATGACTGCTGGACGATATAGCCCAGAACTTTCTTCTGATTCG
ACTTCACCTGATGGTTAGGGTTTAGTTTAAGGGTTAGGGTTAGGGTTATA
AGGAAGAAGCACCCACACAGAAAAATACGTTGAAATTTGTTTTAGTTGCT
CTGGATATGTTTGAGTTAGGGTTAGGGTTAGGGTTAGCGGTATTTGGTCC
GGTAGAGGTATTATGATTTTCTATGTTTTGTTGTAGTCAGTACCCGAACT
CCAACCCAGTATGCTTTCCTTGGATGCTCTTGTTACCGCAATATTATATA
ATAGGAATAATAGAGAAATGCCGTAATCTTCTCCCTCCCTCCCTCCCTCC
CTTCTCTGACTTGTTTCTATCGTTACTATTGATGCTATTGATGCTATTGA
TACTATTGTTCCTATTGTTGCTATCGTTTGACAGCTGAGGGCGACGGTGG
AGGTGTTGCCATCGACACCTCCGAGATCCCTAGCGACACGCTCACCTCTA
TTAGCGCCTCTTCGATTTTCCGGTGCGTCGGGGGCGGGATGTTCGCGAGT
AATGAGGCACGGGAACGCGGTGGCGCTCTGTACGTGACTCGAGGGTCGAT
GGCCGCCTGGGATGGATGCTTTTCGACAAAAAACATGGCGTCTCTAGGGG
CGGCTATTTACTCCTCGCATTCGTGGGTCGAACTCTTCGGAGGGTCGAAG
CTATTGTTGGACGAGGTGCGCGGTCGGGGTCTTCTTTTTTCTTTCCTTGT
TTTCCTTTTTCTAAACATGTTCACATATTATAGAACATATTAACATATTA
TAGAACATATTAACATATTAACCTACTCACATATATATATATATATATAT
TGTGAATGAGTCGACTTTGGGTTAGGGTTAGGGTTAGAAGATATCCGTAC
AGTATACTATTAATTAAAATAGGTACAGTATGTAGATACTTTGAGCTACC
ATACCAAAATCCCCCCACGCCTACGTGTCAAAATAATGATAGGGATAGGA
ATAAGGATAGGATTTATGTCTGAATGTCGGTAGGAGTGGTCAAGGCCTGA
ATCAACAATGTCTGGATGTCTAAGGCCTGAATCAACGATGTCTGGATGTC
TAATGCCTGAATCAACGATGTCTGGATGTCTAATGTCTAAATCAACGATG
TCTGGATGTTTCGATTGTGTGGCGGAAATGTACTAATAATAATAATAATA
ATAATAAAATAAAAGACTCCGTCGGGGGCAATGCTGTACGCATCTGGAGG
AGGGGTCGAGGCGCATAACACTTCGTTCGTTTCCGGAGGAGTGACCTCCA
TGCTGGCGGTGCAGACAACATCAGGGACTTCCATGAAAGCGTTGTCTTGT
TCTTTTAGGGGATGGAAAGGAGCTTACGTGGTGCTCGCCGCGGGAGATGT
CGAGATGGACATGTGTGACTTCAAAAAAAGGTGAGAGCGAGCGCCGTGCG
CTTAGGGCACGGACTCGGGGGTGAAGTCAATAAGTATAGCTTATAGGGGT
GTATGGGTTACGGTTAGGGTTAGGGTTTGTGGACAATCGAAGAGGTAAAG
ACGCATTCGACCGAGTTGGTTTACCTGAGCACTGGGTTCTTTACCTGTTG
ATCCGATTTTGTGCTAAAAGGTAGTAATGTACACATTCAAACCTGACGAT
AGTTGGTCTCCTGGACTGCATCTCTCACGGCGCTAAGGTGTGCATGTTCG
GAGGGTTGGAATGAGTTCAAGTTTTTTTTAGGAATAATAATATCTGCTGC
AATAATTTACACTATTATAAGACGAACAGCGAATCGGCGAAACCGCCTCC
AACTCTGTGGGTCACCCCACTAACCCTAACAATAATCATTGTGACTAAAT
TGTAGATGTACTGACTCTCCCTTGCGTAGTGCACGACTACTTTACCGATT
GCATTCCGACAATGCGGTGAAGAGATGGCTGAAGTATCGAGCTCCCTAAC
CCCATAGCACCTTGGAAAGAGGGGGAGAGAGCTGAGTCATGTGCTGTGCT
GTGCTGTGCTGTCAAACCCTAACCCTAACCCCCTTTCTCCAGCCAAGCCA
AGGTCCTTGTGGCAGCTACCAAC
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Coding sequence (CDS) from alignment at H-elongata_contig7193:2885..6057+

>mRNA_H-elongata_contig7193.14871.1 ID=mRNA_H-elongata_contig7193.14871.1|Name=mRNA_H-elongata_contig7193.14871.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig7193:2885..6057+ (Himanthalia elongata Himel1 dioecious)
ATGTCTAGGAACCGCGCTGAGGGAGATGGCGGTGCGGTGAACGCGATCGG
CGCCGACTTGTTGAAGTTGACAGAGTGCAATATGACCGCGAACTCGTGTG
CGGGCAACGGGGGTGGCGTGAACGTTGCCGGGACAAACCTTTCCGCGGTG
TCGAGCCACTTCGCTAACAATGAGGCGGATTTCGATGGGGGCGGACTGCG
GGGGCATGCCAGGGCGAGCCTGGTGTTGGAGGACTGTCAGTTTGAGGGTA
ACGAGGGGCGGATGTCTAGGAACCGCGCTGAGGGAGATGGCGGTGCGGTG
AACGCGATCGGCGCCGACTTGTTGAAGTTGACAGAGTGCAATATGACCGC
GAACTCGTGTGCGGGCAACGGGGGTGGCGTGAACGTTGCCGGGACAAACC
TTTCCGCGGTGTCGAGCCACTTCGCTAACAATGAGGCGGATTTCGATGGG
GGCGGACTGCGGGGGCATGCCAGGGCGAGCCTGGTGTTGGAGGACTGTCA
GTTTGAGGGTAACGAGGGGCGGATGGGGGGCGGCATCAGTATCATGAAAT
CGAATCTGGTAGCGAAGCGCTGTAACATCTCGGGAAACTCGGCCAATGTA
TGGGGGGCGGCATCAGTATCATGAAATCGAATCTGGTAGCGAAGCGCTGT
AACATCTCGGGAAACTCGGCCAATGTTTTTCGACAAAAAACATGGCGTCT
CTAGTTTTCGACAAAAAACATGGCGTCTCTAG
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