mRNA_H-elongata_contig71910.14870.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71910.14870.1
Unique NamemRNA_H-elongata_contig71910.14870.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig71910.14870.1 vs. uniprot
Match: D7FTR7_ECTSI (Cathepsin L-like proteinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTR7_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 5.840e-20
Identity = 43/48 (89.58%), Postives = 44/48 (91.67%), Query Frame = 1 
Query:   40 QVDWVTKGAVTNVKNQGSCGSCWSFSTTGSMEGAHFIKTGELAVLSEQ 183
            +VDWV KGAVT VKNQGSCGSCWSFSTTGSMEGAHFIK G LAVLSEQ
Sbjct:  260 EVDWVAKGAVTPVKNQGSCGSCWSFSTTGSMEGAHFIKHGNLAVLSEQ 307
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BLAST of mRNA_H-elongata_contig71910.14870.1 vs. uniprot
Match: A0A7S3MM47_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Favella ehrenbergii TaxID=182087 RepID=A0A7S3MM47_9SPIT)

HSP 1 Score: 85.9 bits (211), Expect = 1.110e-18
Identity = 40/48 (83.33%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:   40 QVDWVTKGAVTNVKNQGSCGSCWSFSTTGSMEGAHFIKTGELAVLSEQ 183
            +VDWV  GAVT VKNQGSCGSCWSFSTTGSMEGAHF+ TGEL  LSEQ
Sbjct:   94 EVDWVAAGAVTAVKNQGSCGSCWSFSTTGSMEGAHFLATGELLSLSEQ 141
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BLAST of mRNA_H-elongata_contig71910.14870.1 vs. uniprot
Match: Q4U4M2_ARAHY (Papain-like cysteine protease (Fragment) n=1 Tax=Arachis hypogaea TaxID=3818 RepID=Q4U4M2_ARAHY)

HSP 1 Score: 80.1 bits (196), Expect = 1.860e-18
Identity = 36/46 (78.26%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:   46 DWVTKGAVTNVKNQGSCGSCWSFSTTGSMEGAHFIKTGELAVLSEQ 183
            DW  KGAVT VKNQGSCGSCWSFSTTG++EGAH++ TGEL  LSEQ
Sbjct:    6 DWRDKGAVTPVKNQGSCGSCWSFSTTGALEGAHYLSTGELVSLSEQ 51
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BLAST of mRNA_H-elongata_contig71910.14870.1 vs. uniprot
Match: A0A1S2YNJ9_CICAR (probable cysteine protease RD19B n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A1S2YNJ9_CICAR)

HSP 1 Score: 84.7 bits (208), Expect = 5.740e-18
Identity = 41/63 (65.08%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:    1 EPNTHPLL--SYLICQVDWVTKGAVTNVKNQGSCGSCWSFSTTGSMEGAHFIKTGELAVLSEQ 183
            + NT P+L    L    DW  +GAVT+VKNQGSCGSCWSFSTTG++EGAHF+ TGEL  LSEQ
Sbjct:  119 DANTAPILPTDNLPADFDWRDRGAVTSVKNQGSCGSCWSFSTTGALEGAHFLSTGELVSLSEQ 181
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BLAST of mRNA_H-elongata_contig71910.14870.1 vs. uniprot
Match: A0A482RJ80_9ARCH (Pept_C1 domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RJ80_9ARCH)

HSP 1 Score: 82.4 bits (202), Expect = 5.910e-18
Identity = 38/46 (82.61%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:   46 DWVTKGAVTNVKNQGSCGSCWSFSTTGSMEGAHFIKTGELAVLSEQ 183
            DWV KGAVT VKNQG CGSCWSFSTTGS+EGAHFI TG+L  LSEQ
Sbjct:    1 DWVAKGAVTPVKNQGDCGSCWSFSTTGSVEGAHFIATGKLVSLSEQ 46
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BLAST of mRNA_H-elongata_contig71910.14870.1 vs. uniprot
Match: A0A067L3H8_JATCU (Uncharacterized protein n=1 Tax=Jatropha curcas TaxID=180498 RepID=A0A067L3H8_JATCU)

HSP 1 Score: 84.3 bits (207), Expect = 8.360e-18
Identity = 38/46 (82.61%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:   46 DWVTKGAVTNVKNQGSCGSCWSFSTTGSMEGAHFIKTGELAVLSEQ 183
            DW  KGAVTNVKNQGSCGSCWSFSTTG++EGAHF+ TGEL  LSEQ
Sbjct:  143 DWREKGAVTNVKNQGSCGSCWSFSTTGALEGAHFLSTGELVSLSEQ 188
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BLAST of mRNA_H-elongata_contig71910.14870.1 vs. uniprot
Match: A0A813AYG5_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813AYG5_9DINO)

HSP 1 Score: 82.8 bits (203), Expect = 9.300e-18
Identity = 38/57 (66.67%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:   13 HPLLSYLICQVDWVTKGAVTNVKNQGSCGSCWSFSTTGSMEGAHFIKTGELAVLSEQ 183
            H + + L   V+WVTKGAVT VKNQG CGSCW+FSTTGS+EGAH++ TG+L  LSEQ
Sbjct:   35 HSINADLPASVNWVTKGAVTPVKNQGQCGSCWAFSTTGSVEGAHYLATGKLVSLSEQ 91
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BLAST of mRNA_H-elongata_contig71910.14870.1 vs. uniprot
Match: A0A6C0JCX7_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0JCX7_9ZZZZ)

HSP 1 Score: 83.2 bits (204), Expect = 1.730e-17
Identity = 38/47 (80.85%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:   43 VDWVTKGAVTNVKNQGSCGSCWSFSTTGSMEGAHFIKTGELAVLSEQ 183
            VDW  KGAVT VKNQG CGSCWSFS TGSMEGAHF+KTG+L  LSEQ
Sbjct:  125 VDWTEKGAVTPVKNQGQCGSCWSFSATGSMEGAHFLKTGKLVSLSEQ 171
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BLAST of mRNA_H-elongata_contig71910.14870.1 vs. uniprot
Match: Q2V9X2_HYMPE (Cathepsin L n=1 Tax=Hymeniacidon perlevis TaxID=177573 RepID=Q2V9X2_HYMPE)

HSP 1 Score: 82.8 bits (203), Expect = 2.100e-17
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:   43 VDWVTKGAVTNVKNQGSCGSCWSFSTTGSMEGAHFIKTGELAVLSEQ 183
            VDW TKGAVT VKNQG CGSCW+FSTTGS+EG HF+KTG+L  LSEQ
Sbjct:  111 VDWRTKGAVTGVKNQGQCGSCWAFSTTGSLEGQHFLKTGKLVSLSEQ 157
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BLAST of mRNA_H-elongata_contig71910.14870.1 vs. uniprot
Match: UPI00168D4FCF (C1 family peptidase n=1 Tax=Acinetobacter pittii TaxID=48296 RepID=UPI00168D4FCF)

HSP 1 Score: 81.3 bits (199), Expect = 2.530e-17
Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:   28 YLICQVDWVTKGAVTNVKNQGSCGSCWSFSTTGSMEGAHFIKTGELAVLSEQ 183
            Y+   VDW  KGAVT VK+QG CGSCW+FSTTGS+EG HF+KTGEL  LSEQ
Sbjct:   21 YIPETVDWREKGAVTPVKBQGXCGSCWAFSTTGSLEGQHFLKTGELVALSEQ 72
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71910.14870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTR7_ECTSI5.840e-2089.58Cathepsin L-like proteinase n=2 Tax=Ectocarpus Tax... [more]
A0A7S3MM47_9SPIT1.110e-1883.33Hypothetical protein (Fragment) n=1 Tax=Favella eh... [more]
Q4U4M2_ARAHY1.860e-1878.26Papain-like cysteine protease (Fragment) n=1 Tax=A... [more]
A0A1S2YNJ9_CICAR5.740e-1865.08probable cysteine protease RD19B n=1 Tax=Cicer ari... [more]
A0A482RJ80_9ARCH5.910e-1882.61Pept_C1 domain-containing protein (Fragment) n=1 T... [more]
A0A067L3H8_JATCU8.360e-1882.61Uncharacterized protein n=1 Tax=Jatropha curcas Ta... [more]
A0A813AYG5_9DINO9.300e-1866.67Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A6C0JCX7_9ZZZZ1.730e-1780.85Uncharacterized protein n=1 Tax=viral metagenome T... [more]
Q2V9X2_HYMPE2.100e-1778.72Cathepsin L n=1 Tax=Hymeniacidon perlevis TaxID=17... [more]
UPI00168D4FCF2.530e-1771.15C1 family peptidase n=1 Tax=Acinetobacter pittii T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71910contigH-elongata_contig71910:236..418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score86.3
Seed ortholog evalue5.5e-15
Seed eggNOG ortholog3827.XP_004507484.1
KEGG koko:K01373
KEGG Pathwayko04142,ko04210,map04142,map04210
GOsGO:0000323,GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005764,GO:0005773,GO:0006508,GO:0006807,GO:0006950,GO:0006952,GO:0006970,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009651,GO:0009987,GO:0016787,GO:0019538,GO:0030163,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051603,GO:0051704,GO:0051707,GO:0070011,GO:0071704,GO:0098542,GO:0140096,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.Belongs to the peptidase C1 family
EggNOG OGs37N6V@33090,3G90Y@35493,4JI7U@91835,COG4870@1,KOG1542@2759
EC3.4.22.41
COG Functional cat.O
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Exons1
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931120.4773576-CDS-H-elongata_contig71910:235..4181622931120.4773576-CDS-H-elongata_contig71910:235..418Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71910 236..418 -
1691679706.6310508-CDS-H-elongata_contig71910:235..4181691679706.6310508-CDS-H-elongata_contig71910:235..418Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71910 236..418 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71910.14870.1prot_H-elongata_contig71910.14870.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71910 236..418 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71910.14870.1

>prot_H-elongata_contig71910.14870.1 ID=prot_H-elongata_contig71910.14870.1|Name=mRNA_H-elongata_contig71910.14870.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
EPNTHPLLSYLICQVDWVTKGAVTNVKNQGSCGSCWSFSTTGSMEGAHFI
KTGELAVLSEQ
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mRNA from alignment at H-elongata_contig71910:236..418-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71910.14870.1 ID=mRNA_H-elongata_contig71910.14870.1|Name=mRNA_H-elongata_contig71910.14870.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=183bp|location=Sequence derived from alignment at H-elongata_contig71910:236..418- (Himanthalia elongata Himel1 dioecious)
GAACCGAATACACACCCCCTCCTCTCTTATCTTATCTGTCAGGTGGACTG
GGTAACGAAGGGGGCTGTTACCAACGTCAAGAACCAGGGGTCTTGCGGTA
GTTGCTGGTCGTTCTCGACAACCGGGTCCATGGAGGGTGCGCACTTCATC
AAGACTGGCGAGCTCGCCGTGCTCAGCGAACAG
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Coding sequence (CDS) from alignment at H-elongata_contig71910:236..418-

>mRNA_H-elongata_contig71910.14870.1 ID=mRNA_H-elongata_contig71910.14870.1|Name=mRNA_H-elongata_contig71910.14870.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig71910:236..418- (Himanthalia elongata Himel1 dioecious)
GAACCGAATACACACCCCCTCCTCTCTTATCTTATCTGTCAGGTGGACTG
GGTAACGAAGGGGGCTGTTACCAACGTCAAGAACCAGGGGTCTTGCGGTA
GTTGCTGGTCGTTCTCGACAACCGGGTCCATGGAGGGTGCGCACTTCATC
AAGACTGGCGAGCTCGCCGTGCTCAGCGAACAGGAACCGAATACACACCC
CCTCCTCTCTTATCTTATCTGTCAGGTGGACTGGGTAACGAAGGGGGCTG
TTACCAACGTCAAGAACCAGGGGTCTTGCGGTAGTTGCTGGTCGTTCTCG
ACAACCGGGTCCATGGAGGGTGCGCACTTCATCAAGACTGGCGAGCTCGC
CGTGCTCAGCGAACAG
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