mRNA_H-elongata_contig71904.14869.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71904.14869.1
Unique NamemRNA_H-elongata_contig71904.14869.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig71904.14869.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 404 bits (1037), Expect = 7.830e-136
Identity = 213/416 (51.20%), Postives = 273/416 (65.62%), Query Frame = 1
Query:   16 VELDCEVHMLDVQTAILNADVEEDVFVKMAPDYETNDKP-GVPLVMKLKKSLCGTRQSPKNWFGTMD----------------------------------------------------LVDRFEMSNMSNVSRILDMNVTCDREKGTITISQKDYTEDVVQRYGMKSFNPAYTPGVGPELSPNQPEEKLLNEEEKRRYQAITGAVMYLAQVTRYDILYAVNQLARAMSKPVKVHIGAAKHLLRYLAGSADFSITYKQGGFRLAAFSDTNWGNNPDNGRSTSSYIVMLANAPISFKVRLQGLTAQSTREAELVAAALTIKEAVFCSNMILKLGFDESFGSVPLYIDNTSALHAAGSRTYSPRAKHIALRYFFVQKLVVGGKISIHYVQNDDQLADLGTKHLTKHRHRNLIKLINEF 1104
            VE +     +DV TA L AD++E+VFV+  P +E  DK  G  +VMKL KSL G  QSP NWF T+D                                                    L  RF+M+++   S +L M +  DRE  T+TISQ+ Y + +++R+GM    P  TPG G E+S  QPE+ LL+E+E R+YQ I G++MY+AQV RYDI+YA  QLAR M+KP KVH+ AAKH LRYLAG+ DFSITYK+GGF+LA FSD+NW NNPDNG+STSSY+ MLANAP+SF+  LQGLTA ST EAELVA+AL +KEAVFCSNM+ +LGF + F  +P+Y DNT+ LHA G+R++S R KHIALR+FF+++LV  GKISIHY   +D LAD+GTKH  KHR  +L+ LIN F
Sbjct:   20 VEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKEDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVIVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHRFEHLMDLINNF 435          
BLAST of mRNA_H-elongata_contig71904.14869.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 400 bits (1029), Expect = 1.030e-131
Identity = 213/428 (49.77%), Postives = 274/428 (64.02%), Query Frame = 1
Query:   10 IAVELDCEVHMLDVQTAILNADVEEDVFVKMAPDYETNDKPGVPLVMKLKKSLCGTRQSPKNWFGTMD-----------------------------------------------------------------LVDRFEMSNMSNVSRILDMNVTCDREKGTITISQKDYTEDVVQRYGMKSFNPAYTPGVGPELSPNQPEEKLLNEEEKRRYQAITGAVMYLAQVTRYDILYAVNQLARAMSKPVKVHIGAAKHLLRYLAGSADFSITYKQGGFRLAAFSDTNWGNNPDNGRSTSSYIVMLANAPISFKVRLQGLTAQSTREAELVAAALTIKEAVFCSNMILKLGFDESFGSVPLYIDNTSALHAAGSRTYSPRAKHIALRYFFVQKLVVGGKISIHYVQNDDQLADLGTKHLTKHRHRNLIKLIN 1098
            I VE +     +DV TA L AD++E+VFV+  P +E  DK G  +VMKL KSL G  QSP NWF T+D                                                                 L  RF+M+++   S  L M +  DRE  T+TISQ+ Y + +++R+GM    P  TPG G E+S  QPE+ LL+E+E R+YQ I G++MY+AQV RYDI+YA  QLAR+M+KP KVH+ AAKH LRYLAG+ DFSITYK+GGF+LA FSD+NW NNPDNG+STSSY+ MLANAP+SF+  LQGLTA ST EAELVA+AL +KEAVFCSNM+ +LG  + F  +P+Y DNT+ LHA G+R++S R KHIALR+FF+++LV  GKISIHYV  +D LAD+GTKH  KHR ++L+ LIN
Sbjct:  227 ITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAIKHLLSSGWKLGGIARQXGKLQKRFKMTDLGEASFALGMKIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLIN 654          
BLAST of mRNA_H-elongata_contig71904.14869.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 403 bits (1035), Expect = 1.280e-124
Identity = 211/417 (50.60%), Postives = 274/417 (65.71%), Query Frame = 1
Query:   10 IAVELDCEVHMLDVQTAILNADVEEDVFVKMAPDYETNDKPGVPLVMKLKKSLCGTRQSPKNWFGTMD----------------------------------------------------LVDRFEMSNMSNVSRILDMNVTCDREKGTITISQKDYTEDVVQRYGMKSFNPAYTPGVGPELSPNQPEEKLLNEEEKRRYQAITGAVMYLAQVTRYDILYAVNQLARAMSKPVKVHIGAAKHLLRYLAGSADFSITYKQGGFRLAAFSDTNWGNNPDNGRSTSSYIVMLANAPISFKVRLQGLTAQSTREAELVAAALTIKEAVFCSNMILKLGFDESFGSVPLYIDNTSALHAAGSRTYSPRAKHIALRYFFVQKLVVGGKISIHYVQNDDQLADLGTKHLTKHRHRNLIKLINEF 1104
            I VE +     +DV TA L AD++E+VFV+  P +E  DK G  +VMKL KSL G  QSP NWF T+D                                                    L  RF+M+++   S +L M +  DRE  T+TISQ+ Y + +++R+G+    P  TPG G E+S  QPE+ LL+E+E R+YQ I G++MY+AQV RYDI+YA  QLAR M+KP KVH+ AAKH LRYLAG+ DFSITYK+GGF+LA FSD+NW NNPDNG+STSSY+ +LANAP+SF+  LQGLTA ST EAELVA+AL + EAVF SNM+ +LGF + F  +P+Y DNT+ LHA G+R++S R KHIALR+FF+++LV  GKISIHYV  +D LAD+GTKH  KHR ++L+ LIN F
Sbjct: 1248 ITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNF 1664          
BLAST of mRNA_H-elongata_contig71904.14869.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 378 bits (970), Expect = 2.800e-119
Identity = 196/376 (52.13%), Postives = 251/376 (66.76%), Query Frame = 1
Query:  133 GVPLVMKLKKSLCGTRQSPKNWFGTMD----------------------------------------------------LVDRFEMSNMSNVSRILDMNVTCDREKGTITISQKDYTEDVVQRYGMKSFNPAYTPGVGPELSPNQPEEKLLNEEEKRRYQAITGAVMYLAQVTRYDILYAVNQLARAMSKPVKVHIGAAKHLLRYLAGSADFSITYKQGGFRLAAFSDTNWGNNPDNGRSTSSYIVMLANAPISFKVRLQGLTAQSTREAELVAAALTIKEAVFCSNMILKLGFDESFGSVPLYIDNTSALHAAGSRTYSPRAKHIALRYFFVQKLVVGGKISIHYVQNDDQLADLGTKHLTKHRHRNLIKLINEF 1104
            G  +VMKL KSL G  QSP NWF T+D                                                    L  RF+M+++   S +L M +  DRE  T+TISQ+ Y + +++R+GM    P  TPG G E+S  QPE+ LL+E+E R+YQ I G++MY+AQV RYDI+YA  QLAR M+KP KVH+ AAKH LRYLAG+ DFSITYK+GGF+LA FSD+NW NNPDNG+STSSY+ MLANAP+SF+  LQGLTA ST EAELVA+AL +KEAVFCSNM+ +LGF + F  +P+Y DNT+ LHA G+R++S R KHIALR+FF+++LV  GKISIHYV+ +D LAD+GTKH   HR ++L+ LIN F
Sbjct:  620 GGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHRFKHLMDLINNF 995          
BLAST of mRNA_H-elongata_contig71904.14869.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE)

HSP 1 Score: 369 bits (946), Expect = 2.520e-118
Identity = 198/406 (48.77%), Postives = 263/406 (64.78%), Query Frame = 1
Query:    1 MLAIAVELDCEVHMLDVQTAILNADVEEDVFVKMAPDYETNDKPGVPLVMKLKKSLCGTRQSPKNWFGTMD-------------------------------LVDRFEMSN-----MSNVSRILDMNVTCDREKGTITISQKDYTEDVVQRYGMKSFNPAYTPGVGPELSPNQPEEKLLNEEEKRRYQAITGAVMYLAQVTRYDILYAVNQLARAMSKPVKVHIGAAKHLLRYLAGSADFSITYKQGGFRLAAFSDTNWGNNPDNGRSTSSYIVMLANAPISFKVRLQGLTAQSTREAELVAAALTIKEAVFCSNMILKLGFDESFGSVPLYIDNTSALHAAGSRTYSPRAKHIALRYFFVQKLVVGGKISIHYVQNDDQLADLGTKHLTKHRHRNLIKLINEFKA 1110
            +L I VE D  +  +DV  A L AD++EDV+V+  P +E   + G  LVM L+KSL    QSP NWF T+D                                VD   ++      +S  S I  M +  DRE+GT++IS++ Y++ ++ R+GM +  P  TPG+GP  S  QPEE LLN+EE RRYQ I G ++YL+Q+ RYDI+YA +QLAR M+KP K H+GAAK   RYLAG+  F I YK+GGF+L AF+D+NWGNNPDNG+STSS++ ML +AP++FK  LQ LT QST E ELVAAAL IKEAVFCSN++ +LGF +    VPLY DNT+ LH+ G+R+YS   KHIALR+FF+++LV  G+I+IHYV  D   AD+GTKHL K R + L+ +I  F  
Sbjct:  315 LLCITVEFDLIIVQMDVTAAFLYADIQEDVYVEQPPGFEVKGENGEDLVMLLQKSLYWLAQSPGNWFHTIDPFLISIGFVPLKPDPCVYFYDHDGSQMYLTLSVDDLLLAGNNSDALSIASLISGMEIKRDRERGTLSISREAYSKSILDRFGMSACKPTSTPGLGPGPSNVQPEETLLNQEETRRYQGIVGCLIYLSQILRYDIMYATSQLARPMAKPSKNHMGAAKRTFRYLAGTTYFKIPYKRGGFKLTAFTDSNWGNNPDNGKSTSSHLTMLCDAPMAFKSGLQSLTTQSTMEVELVAAALAIKEAVFCSNILTELGFGKELAQVPLYGDNTATLHSLGNRSYSSTTKHIALRFFFIRELVSEGRIAIHYVPADSNPADIGTKHLNKDRFQLLLNIIKNFNV 720          
BLAST of mRNA_H-elongata_contig71904.14869.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 364 bits (935), Expect = 2.460e-116
Identity = 203/383 (53.00%), Postives = 260/383 (67.89%), Query Frame = 1
Query:    7 AIAVELDCEVHMLDVQTAILNADVEEDVFVKMAPDYETNDKPGVPLVMKLKKSLCGTRQSPKNWFGTMD--LVD-RFEMSNMSNVSRILDMNVTCDREKGTITISQKD--------------YTEDVVQRYGMKSFNPAYTPGVGPELSPNQPEEKLLNEEEKRRYQAITGAVMYLAQVTRYDILYAVNQLARAMSKPVKVHIGAAKHLLRYLAGSADFSITYKQGGFRLAAFSDTNWGNNPDNGRSTSSYIVMLANAPISFKVRLQGLTAQSTREAELVAAALTIKEAVFCSNMILKLGFDESFGSVPLYIDNTSALHAAGSRTYSPRAKHIALRYFFVQKLVVGGKISIHYVQNDDQLADLGTKHLTKHRHRNLIKLINEF 1104
            AIA E D +V  LDV+TA L AD+EE+VFV+MAP YE  +   + LVMKL+KSL G  QSP++W  T+D  LV+  F          I D N T       +T+   D              YT  ++ R+GM S  P  T G GPELS  QPEE LLN E K+RYQAI G+VMYLAQVTRYDI+Y  +Q ARAMS P K+H+GAAKHLLRYL+GS DFSITYK+GGF L A S+ N G+N DNG+S SSYI+M++ AP S K  LQ LTA ST EAELVA+AL +KE +FC+NM+ +LGF   F S PL+ID+T+ L+  G++T+S   KH+ALR+F+++K+V  G+ISIHY+  +D LAD+GT++L K RH+ LI  I  F
Sbjct:  398 AIAAEKDLDVIQLDVKTAFLYADIEENVFVEMAPGYEAKNMEELQLVMKLEKSLDGLAQSPQDWLKTIDSSLVEIGFFPLKSDTCVYIYDHNNTV----VVLTLYVDDLLIIRGGAHHQPGNYTTSILDRFGMGSCKPLSTAGFGPELSVKQPEETLLNAEGKQRYQAIIGSVMYLAQVTRYDIMYCASQFARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTASSNANGGHNTDNGKSMSSYIMMMSTAPASLKSGLQSLTAMSTVEAELVASALAMKEVIFCTNMMKELGFGSEFSSAPLFIDSTATLNVIGNQTFSGHTKHMALRFFYIRKIVKEGRISIHYIPTEDNLADIGTEYLNKQRHQYLIDKIKNF 776          
BLAST of mRNA_H-elongata_contig71904.14869.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 316 bits (809), Expect = 4.420e-98
Identity = 181/421 (42.99%), Postives = 253/421 (60.10%), Query Frame = 1
Query:    7 AIAVELDCEVHMLDVQTAILNADVEEDVFVKMAP-DYETNDKPGVPLVMKLKKSLCGTRQSPKNW----------FGTM------------------------------------------DLVDRFEMSNMSNVSRILDMNVTCDREKGTITISQKDYTEDVVQRYGMKSFNPAYTPGVGPELSPNQPEEKLLNEEEKRRYQAITGAVMYLAQVTRYDILYAVNQLARAMSKPVKVHIGAAKHLLRYLAGSADFSITYKQGGFRLAAFSDTNWGNNPDNGRSTSSYIVMLANAPISFKVRLQGLTAQSTREAELVAAALTIKEAVFCSNMILKLGFDESFGSVPLYIDNTSALHAAGSRTYSPRAKHIALRYFFVQKLVVGGKISIHYVQNDDQLADLGTKHLTKHRHRNLIKLINEFKA 1110
            AIA E   EV+ LDV  A LNA  + DV+V+ AP D E +   G  +V KL+KSL G  QSP  W          FG                                            +L+D FEM++M  V R++ + V  D E GT+ ISQ  Y  D++QRYGM+  NP  TPG G ELS  QP+++LL  E+K+R+QAITG+++YLAQ TRYD+ YAV+QL RA + P +VH+ AAKHLLRYL G+ D  I YK+G FRL+ F+D+++G NPDNGRST+ Y+  L    IS+  + Q L AQ+T EAEL A + + +EAV+ SN + ++GF ++F SVP+  D+T AL  A +  +S R KHIALR+FF+++L  G +I++H+  +   LAD+ TKHL K R   +++LI ++K 
Sbjct:  315 AIACEHGWEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGF-KTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFATIMQLIKDYKC 734          
BLAST of mRNA_H-elongata_contig71904.14869.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE)

HSP 1 Score: 301 bits (770), Expect = 5.790e-95
Identity = 170/412 (41.26%), Postives = 251/412 (60.92%), Query Frame = 1
Query:   34 VHMLDVQTAILNADVEEDVFVKMAPDYET-NDKPGVPLVMKLKKSLCGTRQSPKNWFGTMD----------------------------------------------------LVDRFEMSNMSNVSRILDMNVTCDREKGTITISQKDYTEDVVQRYGMKSFNPAYTPGVGPELSPNQPEEKLLNEEEKRRYQAITGAVMYLAQVTRYDILYAVNQLARAMSKPVKVHIGAAKHLLRYLAGSADFSITYKQGGFRLAAFSDTNWGNNPDNGRSTSSYIVMLANAPISFKVRLQGLTAQSTREAELVAAALTIKEAVFCSNMILKLGFDESFGSVPLYIDNTSALHAAGSRTYSPRAKHIALRYFFVQKLVVGGKISIHYVQNDDQLADLGTKHLTKHRHRNLIKLINEFKA 1110
            ++ LDV  A LNA  +  V+V+ AP     N   G P+V KL++SL G  QSP  W  T+D                                                    L DRFEM++M  V RIL ++V  D E+GT+ ISQ+ Y    ++R+GM+  NP  T G G E+S NQP++++L   +K+ YQ++TG+++YLAQ T++D+ YA  QL++A S P +V++ AAKH+LRYL G+    I YK+G FRLAAF+D+++G NPDNGRST+ Y+  LA   IS+  + Q LTAQST EAE+ A + + +EAV+ SN + +L F ++FGSVP+  D+T AL  AG+  +S R KH+ALRYFF+++LV+ G+I++H+  ++ QLAD+ TK+L KHR  ++I+ I +F  
Sbjct:   83 IYQLDVVGAFLNALCDRYVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTRLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTQFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNF-KTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFSC 493          
BLAST of mRNA_H-elongata_contig71904.14869.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 310 bits (793), Expect = 1.350e-94
Identity = 172/412 (41.75%), Postives = 253/412 (61.41%), Query Frame = 1
Query:   34 VHMLDVQTAILNADVEEDVFVKMAPDYET-NDKPGVPLVMKLKKSLCGTRQSPKNWFGTMD----------------------------------------------------LVDRFEMSNMSNVSRILDMNVTCDREKGTITISQKDYTEDVVQRYGMKSFNPAYTPGVGPELSPNQPEEKLLNEEEKRRYQAITGAVMYLAQVTRYDILYAVNQLARAMSKPVKVHIGAAKHLLRYLAGSADFSITYKQGGFRLAAFSDTNWGNNPDNGRSTSSYIVMLANAPISFKVRLQGLTAQSTREAELVAAALTIKEAVFCSNMILKLGFDESFGSVPLYIDNTSALHAAGSRTYSPRAKHIALRYFFVQKLVVGGKISIHYVQNDDQLADLGTKHLTKHRHRNLIKLINEFKA 1110
            ++ LDV  A LNA  + DV+V+ AP     N   G P+V KL++SL G  QSP  W  T+D                                                    L DRFEM++M  V RIL ++V  D E+GT+ ISQ+ Y   +++R+GM+  NP  TPG G E+S NQP++++L   +K+ YQ++TG+++YLAQ TR+D+ YA  QL++A S P +V++ AAKH+LRYL G+    I YK+G FRLAAF+D+++G NPDNGRST+ Y+  LA   IS+  + Q LTAQST EAE+ A + + +EAV+ SN + +L F ++FGSVP+  D+T AL  AG+  +S R KH+ LRYFF+++LV+ G+I++H+  ++ QLAD+ TK+L KHR  ++I+ I +F  
Sbjct:  447 IYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNF-KTFGSVPINSDSTGALTVAGNAMHSQRTKHVTLRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFSC 857          
BLAST of mRNA_H-elongata_contig71904.14869.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE)

HSP 1 Score: 306 bits (783), Expect = 1.460e-94
Identity = 171/412 (41.50%), Postives = 252/412 (61.17%), Query Frame = 1
Query:   34 VHMLDVQTAILNADVEEDVFVKMAPDYET-NDKPGVPLVMKLKKSLCGTRQSPKNWFGTMD----------------------------------------------------LVDRFEMSNMSNVSRILDMNVTCDREKGTITISQKDYTEDVVQRYGMKSFNPAYTPGVGPELSPNQPEEKLLNEEEKRRYQAITGAVMYLAQVTRYDILYAVNQLARAMSKPVKVHIGAAKHLLRYLAGSADFSITYKQGGFRLAAFSDTNWGNNPDNGRSTSSYIVMLANAPISFKVRLQGLTAQSTREAELVAAALTIKEAVFCSNMILKLGFDESFGSVPLYIDNTSALHAAGSRTYSPRAKHIALRYFFVQKLVVGGKISIHYVQNDDQLADLGTKHLTKHRHRNLIKLINEFKA 1110
            ++ LDV  A LNA  + DV+V+ AP     N   G P+V KL++SL G  QS   W  T+D                                                    L DRFEM++M  V RIL ++V  D E+GT+ ISQ+ Y   +++R+GM+  NP  TPG G E+S NQP++++L   +K+ YQ++ G+++YLAQ TR+D+ YA  QL++A S P +V++ AAKH+LRYL G+    I YK+G FRLAAF+D+++G NPDNGRST+ Y+  LA   IS+  + Q LTAQST EAE+ A + + +EAV+ SN + +L F ++FGSVP+  D+T AL  AG+  +S R KH+ALRYFF+++LV+ G+I++H+  ++ QLAD+ TK+L KHR  ++I+ I +F  
Sbjct:  291 IYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSHALWNDTLDESLTVLGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNF-KTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFSC 701          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71904.14869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5U2_9PHAE7.830e-13651.20Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JME8_9PHAE1.030e-13149.77Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJH6_9PHAE1.280e-12450.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNH5_9PHAE2.800e-11952.13Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JG39_9PHAE2.520e-11848.77Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L6R7_9PHAE2.460e-11653.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JF46_9PHAE4.420e-9842.99Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQD0_9PHAE5.790e-9541.26Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KE92_9PHAE1.350e-9441.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF89_9PHAE1.460e-9441.50Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71904contigH-elongata_contig71904:1391..2659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score177.6
Seed ortholog evalue1.1e-41
Seed eggNOG ortholog53485.EFQ94628
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs2061J@147541,38DPC@33154,3NUZ7@4751,3QNZW@4890,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelDothideomycetes
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1113
Cds size1113
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931120.4158027-CDS-H-elongata_contig71904:1390..22901622931120.4158027-CDS-H-elongata_contig71904:1390..2290Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71904 1391..2290 -
1691679706.607-CDS-H-elongata_contig71904:1390..22901691679706.607-CDS-H-elongata_contig71904:1390..2290Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71904 1391..2290 -
1622931120.4343808-CDS-H-elongata_contig71904:2446..26591622931120.4343808-CDS-H-elongata_contig71904:2446..2659Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71904 2447..2659 -
1691679706.6205611-CDS-H-elongata_contig71904:2446..26591691679706.6205611-CDS-H-elongata_contig71904:2446..2659Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71904 2447..2659 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71904.14869.1prot_H-elongata_contig71904.14869.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71904 1391..2659 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71904.14869.1

>prot_H-elongata_contig71904.14869.1 ID=prot_H-elongata_contig71904.14869.1|Name=mRNA_H-elongata_contig71904.14869.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=371bp
MLAIAVELDCEVHMLDVQTAILNADVEEDVFVKMAPDYETNDKPGVPLVM
KLKKSLCGTRQSPKNWFGTMDLVDRFEMSNMSNVSRILDMNVTCDREKGT
ITISQKDYTEDVVQRYGMKSFNPAYTPGVGPELSPNQPEEKLLNEEEKRR
YQAITGAVMYLAQVTRYDILYAVNQLARAMSKPVKVHIGAAKHLLRYLAG
SADFSITYKQGGFRLAAFSDTNWGNNPDNGRSTSSYIVMLANAPISFKVR
LQGLTAQSTREAELVAAALTIKEAVFCSNMILKLGFDESFGSVPLYIDNT
SALHAAGSRTYSPRAKHIALRYFFVQKLVVGGKISIHYVQNDDQLADLGT
KHLTKHRHRNLIKLINEFKA*
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mRNA from alignment at H-elongata_contig71904:1391..2659-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71904.14869.1 ID=mRNA_H-elongata_contig71904.14869.1|Name=mRNA_H-elongata_contig71904.14869.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1269bp|location=Sequence derived from alignment at H-elongata_contig71904:1391..2659- (Himanthalia elongata Himel1 dioecious)
ATGCTCGCAATCGCGGTGGAGCTGGACTGCGAGGTGCACATGCTGGATGT GCAGACGGCAATCCTCAACGCCGACGTCGAAGAGGACGTGTTCGTCAAGA TGGCGCCCGACTACGAGACCAACGACAAGCCAGGAGTTCCTCTTGTCATG AAGCTCAAGAAGAGCTTGTGTGGTACCCGACAGAGCCCAAAGAACTGGTT TGGCACGATGGACGTGGAGCTCGCCGTTATCGGTTTCCGCCCGCTCAAGT CGGATCTGTGCGTGTACATCTACGAGGTCGAGGCTGGCTTCGTTATCCTG ACGCTCTACGTGGAGGACATCTTGTTCTTTAGCACCAGCAAGACTTTGCC CAACAAGCTCAAGAAGCAGCTGGTGGACCGGTTCGAGATGTCCAACATGA GCAACGTTTCGAGAATCCTCGACATGAACGTCACCTGCGACCGTGAGAAG GGGACTATCACAATTAGTCAGAAGGATTACACGGAGGACGTGGTGCAGCG CTATGGTATGAAAAGCTTCAACCCCGCATACACCCCTGGAGTAGGGCCGG AGCTGTCTCCAAACCAACCGGAGGAGAAGCTACTGAACGAGGAGGAGAAG CGGCGCTACCAGGCAATCACTGGAGCCGTGATGTACCTTGCCCAGGTCAC CCGCTACGACATTCTCTACGCAGTCAATCAGCTGGCGAGGGCCATGTCCA AGCCCGTGAAAGTTCACATAGGGGCAGCCAAGCACCTGCTTCGCTACTTG GCCGGATCCGCAGACTTCTCCATTACCTATAAGCAAGGCGGGTTTAGGCT TGCTGCCTTCTCAGATACCAACTGGGGTAACAACCCAGACAATGGCAGAT CTACGTCATCGTACATCGTGATGCTGGCCAACGCCCCGATCAGCTTCAAA GTGAGACTGCAAGGGCTGACCGCACAGTCCACGAGGGAGGCAGAGCTCGT GGCGGCAGCTCTGACAATTAAGGAGGCGGTGTTCTGCTCCAACATGATTC TGAAGCTTGGCTTCGATGAGAGCTTCGGCAGCGTGCCGCTGTACATCGAC AACACGTCGGCACTGCACGCCGCCGGCAGCCGCACCTACAGCCCTCGTGC AAAGCACATCGCGCTGAGGTATTTTTTCGTGCAAAAGCTGGTAGTGGGGG GCAAGATCAGCATCCACTACGTCCAAAACGATGATCAGCTGGCGGACTTG GGCACCAAGCACCTTACCAAGCACCGTCATCGCAACCTCATCAAGCTCAT CAACGAGTTCAAGGCTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig71904:1391..2659-

>mRNA_H-elongata_contig71904.14869.1 ID=mRNA_H-elongata_contig71904.14869.1|Name=mRNA_H-elongata_contig71904.14869.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2226bp|location=Sequence derived from alignment at H-elongata_contig71904:1391..2659- (Himanthalia elongata Himel1 dioecious)
ATGCTCGCAATCGCGGTGGAGCTGGACTGCGAGGTGCACATGCTGGATGT
GCAGACGGCAATCCTCAACGCCGACGTCGAAGAGGACGTGTTCGTCAAGA
TGGCGCCCGACTACGAGACCAACGACAAGCCAGGAGTTCCTCTTGTCATG
AAGCTCAAGAAGAGCTTGTGTGGTACCCGACAGAGCCCAAAGAACTGGTT
TGGCACGATGGACATGCTCGCAATCGCGGTGGAGCTGGACTGCGAGGTGC
ACATGCTGGATGTGCAGACGGCAATCCTCAACGCCGACGTCGAAGAGGAC
GTGTTCGTCAAGATGGCGCCCGACTACGAGACCAACGACAAGCCAGGAGT
TCCTCTTGTCATGAAGCTCAAGAAGAGCTTGTGTGGTACCCGACAGAGCC
CAAAGAACTGGTTTGGCACGATGGACCTGGTGGACCGGTTCGAGATGTCC
AACATGAGCAACGTTTCGAGAATCCTCGACATGAACGTCACCTGCGACCG
TGAGAAGGGGACTATCACAATTAGTCAGAAGGATTACACGGAGGACGTGG
TGCAGCGCTATGGTATGAAAAGCTTCAACCCCGCATACACCCCTGGAGTA
GGGCCGGAGCTGTCTCCAAACCAACCGGAGGAGAAGCTACTGAACGAGGA
GGAGAAGCGGCGCTACCAGGCAATCACTGGAGCCGTGATGTACCTTGCCC
AGGTCACCCGCTACGACATTCTCTACGCAGTCAATCAGCTGGCGAGGGCC
ATGTCCAAGCCCGTGAAAGTTCACATAGGGGCAGCCAAGCACCTGCTTCG
CTACTTGGCCGGATCCGCAGACTTCTCCATTACCTATAAGCAAGGCGGGT
TTAGGCTTGCTGCCTTCTCAGATACCAACTGGGGTAACAACCCAGACAAT
GGCAGATCTACGTCATCGTACATCGTGATGCTGGCCAACGCCCCGATCAG
CTTCAAAGTGAGACTGCAAGGGCTGACCGCACAGTCCACGAGGGAGGCAG
AGCTCGTGGCGGCAGCTCTGACAATTAAGGAGGCGGTGTTCTGCTCCAAC
ATGATTCTGAAGCTTGGCTTCGATGAGAGCTTCGGCAGCGTGCCGCTGTA
CATCGACAACACGTCGGCACTGCACGCCGCCGGCAGCCGCACCTACAGCC
CTCGTGCAAAGCACATCGCGCTGAGGTATTTTTTCGTGCAAAAGCTGGTA
GTGGGGGGCAAGATCAGCATCCACTACGTCCAAAACGATGATCAGCTGGC
GGACTTGGGCACCAAGCACCTTACCAAGCACCGTCATCGCAACCTCATCA
AGCTCATCAACGAGTTCAAGGCTTAACTGGTGGACCGGTTCGAGATGTCC
AACATGAGCAACGTTTCGAGAATCCTCGACATGAACGTCACCTGCGACCG
TGAGAAGGGGACTATCACAATTAGTCAGAAGGATTACACGGAGGACGTGG
TGCAGCGCTATGGTATGAAAAGCTTCAACCCCGCATACACCCCTGGAGTA
GGGCCGGAGCTGTCTCCAAACCAACCGGAGGAGAAGCTACTGAACGAGGA
GGAGAAGCGGCGCTACCAGGCAATCACTGGAGCCGTGATGTACCTTGCCC
AGGTCACCCGCTACGACATTCTCTACGCAGTCAATCAGCTGGCGAGGGCC
ATGTCCAAGCCCGTGAAAGTTCACATAGGGGCAGCCAAGCACCTGCTTCG
CTACTTGGCCGGATCCGCAGACTTCTCCATTACCTATAAGCAAGGCGGGT
TTAGGCTTGCTGCCTTCTCAGATACCAACTGGGGTAACAACCCAGACAAT
GGCAGATCTACGTCATCGTACATCGTGATGCTGGCCAACGCCCCGATCAG
CTTCAAAGTGAGACTGCAAGGGCTGACCGCACAGTCCACGAGGGAGGCAG
AGCTCGTGGCGGCAGCTCTGACAATTAAGGAGGCGGTGTTCTGCTCCAAC
ATGATTCTGAAGCTTGGCTTCGATGAGAGCTTCGGCAGCGTGCCGCTGTA
CATCGACAACACGTCGGCACTGCACGCCGCCGGCAGCCGCACCTACAGCC
CTCGTGCAAAGCACATCGCGCTGAGGTATTTTTTCGTGCAAAAGCTGGTA
GTGGGGGGCAAGATCAGCATCCACTACGTCCAAAACGATGATCAGCTGGC
GGACTTGGGCACCAAGCACCTTACCAAGCACCGTCATCGCAACCTCATCA
AGCTCATCAACGAGTTCAAGGCTTAA
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