mRNA_H-elongata_contig71892.14867.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig71892.14867.1 vs. uniprot
Match: D7FVN6_ECTSI (Guanyl nucleotide exchange factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVN6_ECTSI) HSP 1 Score: 263 bits (672), Expect = 4.360e-82 Identity = 118/165 (71.52%), Postives = 138/165 (83.64%), Query Frame = 1
Query: 1 VTAVREIIEGDGPSQTKRKQGGRVFQAGSTNVLGSFCPEFTPVRGLDEVTVRQVSAGYGHSCCCTTEGELYTWGNNRDGCLGLPRTTKFVDIPQLVSCLYASPTNLALGRPTRQSSVFDNLGSEIAVDGDRSGDGCRKCSCTQHDPQGWWEVDLESVVHVQNIKV 495
+TAVRE EG+G + K +GGRV+QAGSTNVLG+FCP F P GLDEV V+QVSAGYGHSCCCT +GELYTWG+NRDGCLGLPR+TKF + PQLV+CLY SP NLA+GRP+RQSSV+D L + +AVDGDRSGD RKCSCTQ DPQGWWEVDL +VHV +K+
Sbjct: 284 LTAVREAHEGEGEGRAKALRGGRVYQAGSTNVLGTFCPAFKPTMGLDEVMVKQVSAGYGHSCCCTMDGELYTWGSNRDGCLGLPRSTKFANFPQLVTCLYVSPKNLAMGRPSRQSSVYDGLSAGMAVDGDRSGDHYRKCSCTQQDPQGWWEVDLGQLVHVHQVKI 448
BLAST of mRNA_H-elongata_contig71892.14867.1 vs. uniprot
Match: A0A6H5JHV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHV0_9PHAE) HSP 1 Score: 165 bits (418), Expect = 7.110e-48 Identity = 72/98 (73.47%), Postives = 85/98 (86.73%), Query Frame = 1
Query: 199 EGELYTWGNNRDGCLGLPRTTKFVDIPQLVSCLYASPTNLALGRPTRQSSVFDNLGSEIAVDGDRSGDGCRKCSCTQHDPQGWWEVDLESVVHVQNIK 492
+GELYTWG+NRDGCLGLPR+TKF + PQLV+CLY SPTNLA+GRP+RQSSV+D L + +AVDG+RSGD RKCSCTQ DPQGWWEVDL +VHV +K
Sbjct: 2 DGELYTWGSNRDGCLGLPRSTKFANFPQLVTCLYVSPTNLAIGRPSRQSSVYDGLSAAMAVDGERSGDHYRKCSCTQQDPQGWWEVDLGQLVHVHQVK 99
BLAST of mRNA_H-elongata_contig71892.14867.1 vs. uniprot
Match: A0A8J2SRF7_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SRF7_9STRA) HSP 1 Score: 155 bits (391), Expect = 1.640e-40 Identity = 78/166 (46.99%), Postives = 100/166 (60.24%), Query Frame = 1
Query: 1 VTAVREIIEGDGPSQTKRKQGGRVFQAGSTNVLGSFCPEFTPVRG-LDEVTVRQVSAGYGHSCCCTTEGELYTWGNNRDGCLGLPRTTKFVDIPQLVSCLYASPTNLALGRPTRQSSVFDNLGSEIAVDGDRSGDGCRKCSCTQHDPQGWWEVDLESVVHVQNIKV 495
VT + E+ G G ++ K KQGG+VF AGS +VLG F P F V G L V Q SAG+ HS T+EGELY WG N DGC +F+ P L +C+Y+ P NLALGRP RQSS + + +AVDG+ G C+ TQ DPQ WWEVDL ++ +K+
Sbjct: 849 VTLIEEVWTGTGTNRMKEKQGGQVFAAGSASVLGLFHPAFDRVMGELASVQAVQASAGFAHSGVVTSEGELYCWGMNDDGCCAAHPKVRFLAEPTLAACIYSRPGNLALGRPARQSSCYGGQDAHVAVDGNCDGSSPELCTSTQQDPQAWWEVDLGDFANLHIVKL 1014
BLAST of mRNA_H-elongata_contig71892.14867.1 vs. uniprot
Match: A0A7S2WVE5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVE5_9STRA) HSP 1 Score: 138 bits (348), Expect = 4.900e-39 Identity = 65/134 (48.51%), Postives = 84/134 (62.69%), Query Frame = 1
Query: 79 AGSTNVLGSFCPEFTPVRGLDEVTVRQVSAGYGHSCCCTTEGELYTWGNNRDGCLGLPRTTKFVDIPQLVSCLYASPTNLALGRPTRQSSVFDNLGSEIAVDGDRSGDGCRKCSCTQHDPQGWWEVDLESVVHV 480
AG T+VLG CP FTPV GL+ + QVS G+ HS + EGEL+ WG N+ GC G P F P VSC+YA+P+NLALG QSSV+D + +A+DGD G +C TQ +PQ WWE+DL + V +
Sbjct: 1 AGPTSVLGISCPGFTPVPGLEHAAIVQVSGGFSHSAAVSIEGELFCWGLNQTGCCGAPPVQYFCPEPYNVSCIYATPSNLALGGSATQSSVYDGKDAALAIDGDVDGSSPDRCCSTQCEPQPWWELDLGNFVTI 134
BLAST of mRNA_H-elongata_contig71892.14867.1 vs. uniprot
Match: A0A6G0XXD3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XXD3_9STRA) HSP 1 Score: 118 bits (296), Expect = 9.590e-28 Identity = 60/145 (41.38%), Postives = 85/145 (58.62%), Query Frame = 1
Query: 61 GGRVFQAGSTNVLGSFCPEFTPVRGLDEVTVRQVSAGYGHSCCCTTEGELYTWGNNRDGCLGLPRTTKFVDIPQLVSCLYASPTNLALGRPTRQSSVFDNLGSEIAVDGDRSGDGCRKCSCTQHDPQGWWEVDLESVVHVQNIKV 495
GG V+ GS L + P ++ V+ L + V++V G+GH+ T GELYTWG N D C G P + + P+L+ + +P NLAL +P RQSSVF+ ++ AVDG++SG C+ TQ D WWEVDL ++ IKV
Sbjct: 1006 GGDVYMCGSAGPLLHYTPTWSIVQKLRGLPVKEVCCGFGHTAAVTYFGELYTWGQNIDECTGHPADRRVIQEPELLRAFHVAPYNLALRKPARQSSVFNEQDADRAVDGNKSGQ-LHTCNHTQFDDHPWWEVDLGQPSVIERIKV 1149
BLAST of mRNA_H-elongata_contig71892.14867.1 vs. uniprot
Match: A0A2P4XEF6_9STRA (Regulator of chromosome condensation (RCC1) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XEF6_9STRA) HSP 1 Score: 116 bits (291), Expect = 4.250e-27 Identity = 56/150 (37.33%), Postives = 83/150 (55.33%), Query Frame = 1
Query: 46 TKRKQGGRVFQAGSTNVLGSFCPEFTPVRGLDEVTVRQVSAGYGHSCCCTTEGELYTWGNNRDGCLGLPRTTKFVDIPQLVSCLYASPTNLALGRPTRQSSVFDNLGSEIAVDGDRSGDGCRKCSCTQHDPQGWWEVDLESVVHVQNIKV 495
+K+ GG V+ G L + + V LD V +RQV+ G H+ ++ GELYTWG N GC G F+D P+L+ CL+ P NLALGRP RQ ++++ G +AV+G++ G C T + WWEVDL ++ I++
Sbjct: 376 SKKLLGGHVYVCGGATALSRYMLSWERVPELDSVAIRQVACGNSHTAAVSSYGELYTWGRNFHGCTGHDANRIFIDKPELLKCLHVEPYNLALGRPCRQITIYNEQGPHLAVNGEKGGT-LATCIHTHLEDSPWWEVDLGQPAVIEKIRL 524
BLAST of mRNA_H-elongata_contig71892.14867.1 vs. uniprot
Match: K0S522_THAOC (EF-hand domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S522_THAOC) HSP 1 Score: 112 bits (280), Expect = 1.330e-25 Identity = 61/151 (40.40%), Postives = 91/151 (60.26%), Query Frame = 1
Query: 61 GGRVFQAGSTNVLGSFCPEFTPVRGLDE--VTVRQVSAGYGHSCCCTTEGELYTWGNNRDGCLGLPRTTKFVDIPQLVSCLYASPTNLALGRPTRQSSVFDN---LGSEIAVDGDRSGDGCRKCSC-TQHDPQGWWEVDLESVVHVQNIKV 495
GGRV+ AG ++LG CP F + ++ TV +SAG H T GE+Y WG+NR+GC G PR +FV+ P ++ LY +P+NLALG+P+R SS + + L + AVDGD G K +Q + W++VDL+S H+ +I++
Sbjct: 700 GGRVYVAGPKHILGQTCPTFRQLDVFEKSSTTVECISAGNHHQAVVTNAGEVYCWGDNRNGCCGQPREMRFVETPTKIA-LYEAPSNLALGKPSRLSSRYKDASGLSANNAVDGDIDGHSEDKLLAHSQWEANPWFDVDLQSFAHISHIRL 849
BLAST of mRNA_H-elongata_contig71892.14867.1 vs. uniprot
Match: A0A0P1AEI3_PLAHL (FOG: RCC1 domain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AEI3_PLAHL) HSP 1 Score: 108 bits (270), Expect = 3.000e-24 Identity = 51/145 (35.17%), Postives = 81/145 (55.86%), Query Frame = 1
Query: 61 GGRVFQAGSTNVLGSFCPEFTPVRGLDEVTVRQVSAGYGHSCCCTTEGELYTWGNNRDGCLGLPRTTKFVDIPQLVSCLYASPTNLALGRPTRQSSVFDNLGSEIAVDGDRSGDGCRKCSCTQHDPQGWWEVDLESVVHVQNIKV 495
GG+V+ G L + + + ++V QV+ G H+ ++ GELYTWG N GC G F++ P+L+ CL+ +P NLALG+P+RQ S+++ G +AV+G G C TQ + WWEVDL + ++ I++
Sbjct: 1025 GGQVYVCGGATALNRYVLSWEQIPDFTCISVCQVACGGSHTAAVSSYGELYTWGRNSHGCTGHNANRLFIEKPELLKCLHVAPYNLALGKPSRQISIYNEQGPNLAVNGKTEG-ALAVCIHTQMEDNPWWEVDLGQLAVIEKIRL 1168
BLAST of mRNA_H-elongata_contig71892.14867.1 vs. uniprot
Match: A0A024UHJ3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UHJ3_9STRA) HSP 1 Score: 102 bits (254), Expect = 4.210e-22 Identity = 60/170 (35.29%), Postives = 85/170 (50.00%), Query Frame = 1
Query: 4 TAVREIIEGDGPSQTKRKQGGRVFQAGSTNVLGSFCPEFTPVRGLDEVTVRQVSAGYGHSCCCTTEGELYTWGNNRDGCLGLPRTTKFVDIPQLVSCLYASPTNLALGRPTR------QSSVFDNLGSEIAVDGDRSGDGCRKCSCTQHDPQGWWEVDLESVVHVQNIKV 495
TA IE D + +GG ++ GS + LG FCP F + L V + VS G H+ +T+GE+YTWGNN GC G ++V P + C+Y P N+A R T+ QSSV + +A+DG+ G CS T + +W+VDL V I+V
Sbjct: 890 TAALTAIEAD---MARGSKGGHLYVCGSAHALGKFCPVFVALPQLKGVPISNVSCGNAHTAAVSTDGEIYTWGNNTGGCTGHTLVHRYVKAPTKLHCMYQMPENMA--RHTKYTVAAVQSSVNSGYSAAMALDGNTDGQFESSCSQTFCEICPFWQVDLGVHCRVDTIRV 1054
BLAST of mRNA_H-elongata_contig71892.14867.1 vs. uniprot
Match: UPI0005CB1C8C (ultraviolet-B receptor UVR8 isoform X1 n=2 Tax=Fragaria vesca subsp. vesca TaxID=101020 RepID=UPI0005CB1C8C) HSP 1 Score: 64.7 bits (156), Expect = 4.330e-9 Identity = 48/121 (39.67%), Postives = 58/121 (47.93%), Query Frame = 1
Query: 61 GGRVFQAGSTNV--LG-----SFCPEFTPVRGLDEVTVRQVSAGYGHSCCCTTEGELYTWGNNRDGCLGL-PRTTKFVDIPQLVSCLYASPTNLALGRPTRQSSVFDNLGSEIAVDGDRSG 399
GGRVF G + LG + E V G+D+ V Q+S GY HSC T +GELY WG N +G LGL R K V IP V CL +A +V D G E G+ SG
Sbjct: 81 GGRVFATGLNDFGQLGVSSDVPYSTEPAEVSGIDKQVV-QISTGYYHSCAVTEDGELYMWGKNSNGQLGLGKRGAKAVSIPTKVECLAGMTIRMAALGSEHSVAVTD--GGECLSWGEGSG 198 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71892.14867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig71892.14867.1 >prot_H-elongata_contig71892.14867.1 ID=prot_H-elongata_contig71892.14867.1|Name=mRNA_H-elongata_contig71892.14867.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=171bp VTAVREIIEGDGPSQTKRKQGGRVFQAGSTNVLGSFCPEFTPVRGLDEVTback to top mRNA from alignment at H-elongata_contig71892:1708..3062+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig71892.14867.1 ID=mRNA_H-elongata_contig71892.14867.1|Name=mRNA_H-elongata_contig71892.14867.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1355bp|location=Sequence derived from alignment at H-elongata_contig71892:1708..3062+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig71892:1708..3062+ >mRNA_H-elongata_contig71892.14867.1 ID=mRNA_H-elongata_contig71892.14867.1|Name=mRNA_H-elongata_contig71892.14867.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1026bp|location=Sequence derived from alignment at H-elongata_contig71892:1708..3062+ (Himanthalia elongata Himel1 dioecious)back to top |