mRNA_H-elongata_contig71856.14865.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig71856.14865.1 vs. uniprot
Match: A0A6H5JZK6_9PHAE (TPT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZK6_9PHAE) HSP 1 Score: 411 bits (1056), Expect = 1.870e-139 Identity = 225/346 (65.03%), Postives = 258/346 (74.57%), Query Frame = 1
Query: 16 LLLLVYLLAPPCFSSDFMTVKRRGKHAKRHERFLMVPSTSRSHTRISDEDGSCLSRGAGSLASASPAAAVFSHLLRGGGTTATSTTNSVSQRKIDADRGMMETARVLGYFALWYALNVWYNIVNKRVLNAIHLPVSIAVLQLGIGSLWVAAQWTLGVRTRPGKLTRSGLSRLTPVAFFHGGGQLATVLSLGAGAVSFTHVVKAMEPFFSALVAAVWFRQVFRWQVYASLVPVVAGVALACAKEINFSWLSFLAAMISNLLFACRSNFSKALMIRPPTQGVSSVSSANLYGLVTLTAFVMFAPVAAIAGWGKWRTTWELALRQGHQGKALALSVLLSGISHYLNNEV 1053
LLL+V LL P S RRG+ A +HE L++PST+RS S SR + + LLRGG +T +S++ +A + + ARVLGYF LWYALNVWYNIVNK+VLNA+ LP SIAVLQLGIGSLWV QW + RT PGKL +G +RLTPVAFFHGGGQLATVLSLGAGAVSFTHVVKAMEPFFSALVAAVWFR +FRWQVYASL+PVVAGV+LACAKEINFSW+SFLAAM SNLLFACR+NFSKALM RPP + +S SSANLYGLVT+ +FV+FAP AA+ GW KW WE A+ GHQ KAL LSVLLSG+SHYLNNEV
Sbjct: 7 LLLVVSLLISPGLSHTVALDARRGRQAGQHE--LLLPSTARSKLAPS-------SRRINNXXXXXXXXXXXAGLLRGGDGAEPATQSSLTA---EAGSSLKDRARVLGYFGLWYALNVWYNIVNKKVLNALPLPSSIAVLQLGIGSLWVGTQWLVRARTPPGKLAATGAARLTPVAFFHGGGQLATVLSLGAGAVSFTHVVKAMEPFFSALVAAVWFRHIFRWQVYASLLPVVAGVSLACAKEINFSWVSFLAAMASNLLFACRANFSKALMTRPPFEDGASTSSANLYGLVTIVSFVVFAPFAALTGWSKWGPAWESAMENGHQAKALVLSVLLSGVSHYLNNEV 340
BLAST of mRNA_H-elongata_contig71856.14865.1 vs. uniprot
Match: A0A4D9D5R1_9STRA (TPT domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5R1_9STRA) HSP 1 Score: 269 bits (687), Expect = 6.720e-84 Identity = 139/244 (56.97%), Postives = 180/244 (73.77%), Query Frame = 1
Query: 322 TARVLGYFALWYALNVWYNIVNKRVLNAIHLPVSIAVLQLGIGSLWVAAQWTLGVRTRPGKLTRSGLSRLTPVAFFHGGGQLATVLSLGAGAVSFTHVVKAMEPFFSALVAAVWFRQVFRWQVYASLVPVVAGVALACAKEINFSWLSFLAAMISNLLFACRSNFSKALMIRPPTQGVSSVSSANLYGLVTLTAFVMFAPVAAIAGWGKWRTTWELALRQGHQGKALALSVLLSGISHYLNNEV 1053
T L YFALW+ALNV+YNIVNKRVLN + LP ++A QLGIG+++V+ W L VR P +++ +GL L +AF+HG GQL TVLSLGA AVSFTH+VKA+EPFFSALVAAV F+QVF+ QVY SL+PVV+GVA+ACA +++F WL+FL AM SNL FA R+NFSK + R +G SS+S AN+YGLVT+ AF + P+ + WR +W +A + +G L +LLSG+ HYLNNEV
Sbjct: 101 TVLTLSYFALWFALNVYYNIVNKRVLNTLPLPFTVATAQLGIGAVYVSLSWLLRVRASP-RISTTGLKDLLSIAFYHGSGQLFTVLSLGAAAVSFTHIVKALEPFFSALVAAVCFKQVFKPQVYLSLLPVVSGVAVACANDVSFGWLAFLTAMASNLAFALRANFSKGALFRYRKEGKSSMSPANVYGLVTILAFFLLLPLTCLWEGVDWRPSWRVATEK-IEGTTLVHQLLLSGLFHYLNNEV 342
BLAST of mRNA_H-elongata_contig71856.14865.1 vs. uniprot
Match: A0A836CFX7_9STRA (Plastidic triose-phosphate/phosphate translocator n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFX7_9STRA) HSP 1 Score: 256 bits (653), Expect = 6.170e-79 Identity = 144/250 (57.60%), Postives = 175/250 (70.00%), Query Frame = 1
Query: 319 ETARVLGYFALWYALNVWYNIVNKRVLNAIHLPVSIAVLQLGIGSLWVAAQWTLGVRTRPGKLTRSGLSRLTPVAFFHGGGQLATVLSLGAGAVSFTHVVKAMEPFFSALVAAVWFRQVFRWQVYASLVPVVAGVALACAKEINFSWLSFLAAMISNLLFACRSNFSKALMIRPPTQGVSSVSSANLYGLVTLTAFVMFAPVAAIAGWGKWRTTW-----ELALRQGHQGKALALSVLLSGISHYLNNEV 1053
+ A+V YFALWYALN+ YNI NKR LNA+ LP ++ QLG G++WV AQW L +R P L R L R+ PVA FHGGGQ+ATVLSLGAGAVSFTH+VKA EP FSALVAAV F QVF+ QVYA+L+PVV GVA+ACAKE+NFSW+SF+AAM SNL FA R+N+SK LM + + +V ANLY L+T+ AFV+ P+A A W +LA LA V LSG++HYLNNEV
Sbjct: 88 QKAKVAFYFALWYALNIAYNIANKRALNALPLPWTVGTAQLGAGAVWVGAQWLLRIRAAP-VLERGALRRVLPVAAFHGGGQVATVLSLGAGAVSFTHIVKAAEPLFSALVAAVAFGQVFKPQVYAALLPVVGGVAVACAKELNFSWVSFVAAMSSNLFFALRANYSKVLMQKRLGR---NVEPANLYALITMVAFVLCLPLALAAEGALVGPAWGQGVKDLAGVVARPRAQLAWLVALSGLTHYLNNEV 333
BLAST of mRNA_H-elongata_contig71856.14865.1 vs. uniprot
Match: A0A7S4DBS7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBS7_HETAK) HSP 1 Score: 253 bits (645), Expect = 3.490e-78 Identity = 136/247 (55.06%), Postives = 173/247 (70.04%), Query Frame = 1
Query: 313 MMETARVLGYFALWYALNVWYNIVNKRVLNAIHLPVSIAVLQLGIGSLWVAAQWTLGVRTRPGKLTRSGLSRLTPVAFFHGGGQLATVLSLGAGAVSFTHVVKAMEPFFSALVAAVWFRQVFRWQVYASLVPVVAGVALACAKEINFSWLSFLAAMISNLLFACRSNFSKALMIRPPTQGVSSVSSANLYGLVTLTAFVMFAPVAAIAGWGKWRTTWELALRQGHQGKALALSVLLSGISHYLNNEV 1053
++ T +VLGYF LWY LN+ YNIVNK+VLN +P ++A +QLGIG L+ A W +R P +L+ + + PVAF+H GQL TV+SL AGAVSF H+VKA+EPFFSALVAAV+ +Q F+ QVYA+LVPVVAGVALAC E++FSW SF AAM SN FACR+NFSK LM ++S+ANLY +VTL AF++ AP+A A W A+ G K LA ++LLSG+ HYLNNEV
Sbjct: 50 VLHTLKVLGYFGLWYVLNIAYNIVNKKVLNKFQVPWTVAAVQLGIGGLYALASWATPLRAAP-QLSVKSMKAIAPVAFYHSSGQLLTVVSLFAGAVSFAHIVKALEPFFSALVAAVFLKQYFKPQVYATLVPVVAGVALACYSEVDFSWASFAAAMGSNAAFACRANFSKHLM---GADLGKNMSAANLYAVVTLGAFLLLAPLALAAEGAALPREWARAVAAGITEKKLATNILLSGLFHYLNNEV 292
BLAST of mRNA_H-elongata_contig71856.14865.1 vs. uniprot
Match: A0A7S4NB18_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NB18_9STRA) HSP 1 Score: 217 bits (553), Expect = 6.270e-64 Identity = 121/261 (46.36%), Postives = 168/261 (64.37%), Query Frame = 1
Query: 277 SVSQRKIDADRGMMETARVLGYFALWYALNVWYNIVNKRVLNAIHLPVSIAVLQLGIGSLWVAAQWTLGVRTRPGKLTRSGLSRLTPVAFFHGGGQLATVLSLGAGAVSFTHVVKAMEPFFSALVAAVWFRQVFRWQVYASLVPVVAGVALACAKEINFSWLSFLAAMISNLLFACRSNFSKALMIRPPTQGVSSVSSANLYGLVTLTAFVMFAPVAAIAGWGKWRTTWELALRQGHQGKA--LALSVLLSGISHYLNNEV 1053
S+ R D + G++ ++ GYF LWYALNV YNI+NK+VLN + P+++ +Q GIG+L+ A W L +R P +LT G + V F+H GQL +++SLGAG VSFTH+VKA+EPFFSALV+A+ F + QVYA+L+PVV GV+ AC KE +FSWL+F AM SN+ FA R+ SK+ M + ++SV NL+GLVT AF + P + + W A+ +G LA S++LSG+ HYLNNEV
Sbjct: 70 SLVPRGGDGEIGLLHRLKIGGYFGLWYALNVIYNIINKKVLNVVPAPLTVGSIQFGIGALYAAILWALSIRPAP-RLTSKGRDSVWSVGFYHSAGQLLSMISLGAGPVSFTHIVKALEPFFSALVSALVFGTWMKPQVYATLIPVVGGVSYACLKERSFSWLAFWTAMGSNVAFALRAVMSKSAMTSYIGENINSV---NLFGLVTWAAFFISIPTFLLGEGISFLELWSKAIGEGSDTTMPQLARSLVLSGLFHYLNNEV 326
BLAST of mRNA_H-elongata_contig71856.14865.1 vs. uniprot
Match: A0A7S1FZ62_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FZ62_9STRA) HSP 1 Score: 216 bits (550), Expect = 1.310e-63 Identity = 116/253 (45.85%), Postives = 166/253 (65.61%), Query Frame = 1
Query: 298 DADRGMMETARVLGYFALWYALNVWYNIVNKRVLNAIHLPVSIAVLQLGIGSLWVAAQWTLGVRTRPGKLTRSGLSRLTPVAFFHGGGQLATVLSLGAGAVSFTHVVKAMEPFFSALVAAVWFRQVFRWQVYASLVPVVAGVALACAKEINFSWLSFLAAMISNLLFACRSNFSKALMIRPPTQGVSSVSSANLYGLVTLTAFVMFAPVAAIAGWGKWRTTWELALRQ-GHQGKALALSVLLSGISHYLNNEV 1053
DA + +V YFALWY LN+ YNI NK++LNA+ LP+++ LQLG+GS +VA W G+R P LT +G L V F+H GQL +++SLGAGAVSFTH+VKA+EPFFSA V+A++ + R QVYA+L+PVV GVA AC +++F+WL F +AM SNL+FA R+ SKA M P + + N++G+VT+ +F++ PVA ++ W + + + A+ G + +SG+ HYLNNEV
Sbjct: 72 DATPTIPPALKVTVYFALWYILNILYNIQNKKILNALPLPLAVGTLQLGVGSTFVAMLWATGLRKAP-ILTPNGKGALKKVGFYHSAGQLLSMVSLGAGAVSFTHIVKALEPFFSAAVSALYLGKWMRPQVYAALIPVVGGVATACFSDLSFTWLGFYSAMGSNLMFALRAVMSKAAMTSPIGE---ETTPTNVFGVVTIYSFLLALPVAFLSDWSSFGSLFRDAITSTGKSNLQFVKDICVSGLVHYLNNEV 320
BLAST of mRNA_H-elongata_contig71856.14865.1 vs. uniprot
Match: A0A1E7F950_9STRA (TPT-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F950_9STRA) HSP 1 Score: 213 bits (543), Expect = 2.570e-63 Identity = 114/246 (46.34%), Postives = 159/246 (64.63%), Query Frame = 1
Query: 316 METARVLGYFALWYALNVWYNIVNKRVLNAIHLPVSIAVLQLGIGSLWVAAQWTLGVRTRPGKLTRSGLSRLTPVAFFHGGGQLATVLSLGAGAVSFTHVVKAMEPFFSALVAAVWFRQVFRWQVYASLVPVVAGVALACAKEINFSWLSFLAAMISNLLFACRSNFSKALMIRPPTQGVSSVSSANLYGLVTLTAFVMFAPVAAIAGWGKWRTTWELALRQGHQGKALALSVLLSGISHYLNNEV 1053
M+ + GYFA WYALNV YNI+NK+VLN + P+ + +Q GIG+L+ A W R P KLT G + V +H GQL+T++SL AG VSF+H+VKA+EPFFSA+V+ +F + QVYA+L+PVV GV AC KE+NFSWL+F AAM SNL FA R+ SK+ + G +++++ N++GLVT+TAF++ PVA I + W A+ Q ++ +SG+ HYLNNEV
Sbjct: 1 MQRLEIGGYFAAWYALNVVYNIINKKVLNVLPAPLIVGSIQFGIGALYCALVWIFKFRPFP-KLTAGGTKAVASVGAYHMLGQLSTMISLQAGPVSFSHIVKAVEPFFSAIVSGFYFNSWMKPQVYATLIPVVGGVGYACLKELNFSWLAFGAAMASNLFFALRAVLSKSALQSGKATG-TNLTAPNMFGLVTVTAFLLSIPVALIREGSGFSALWLAAMEQVESKSQFVRAIFISGLFHYLNNEV 244
BLAST of mRNA_H-elongata_contig71856.14865.1 vs. uniprot
Match: B7G197_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G197_PHATC) HSP 1 Score: 209 bits (533), Expect = 1.120e-60 Identity = 118/251 (47.01%), Postives = 162/251 (64.54%), Query Frame = 1
Query: 301 ADRGMMETARVLGYFALWYALNVWYNIVNKRVLNAIHLPVSIAVLQLGIGSLWVAAQWTLGVRTRPGKLTRSGLSRLTPVAFFHGGGQLATVLSLGAGAVSFTHVVKAMEPFFSALVAAVWFRQVFRWQVYASLVPVVAGVALACAKEINFSWLSFLAAMISNLLFACRSNFSKALMIRPPTQGVSSVSSANLYGLVTLTAFVMFAPVAAIAGWGKWRTTWELALRQGHQGKALALSVLLSGISHYLNNEV 1053
A ++ T +V YFALWYALN+ YNI+NK++LN + PV++ +Q G+G +V W L +R P LT G + + V F+H GQLA+++SLGAG VSFTH+VKA+EPFFSA+V+A+ F + QVYA+L+PVV GV AC KE +FSWL+F AM SNL FA R+ SK M G +++SS N++ +VTL AFV P+A + + T W AL Q L ++ +SG+ HYLNNEV
Sbjct: 99 APHPLLHTLKVGFYFALWYALNIVYNILNKKLLNVLPSPVTVGSIQFGVGCFYVLLVWALKLRPAP-TLTSQGKAAVQKVGFWHCTGQLASMVSLGAGPVSFTHIVKALEPFFSAVVSALAFGTWMKPQVYATLLPVVGGVGYACLKERSFSWLAFYMAMGSNLAFALRAVLSKVAMSSGANVG-TNISSTNVFAMVTLAAFVWSIPMALVTEGRSFGTLWNKALSQ-QSAADLCKALFVSGMFHYLNNEV 346
BLAST of mRNA_H-elongata_contig71856.14865.1 vs. uniprot
Match: A0A8J6C741_DIALT (TPT domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C741_DIALT) HSP 1 Score: 207 bits (526), Expect = 2.940e-60 Identity = 111/252 (44.05%), Postives = 163/252 (64.68%), Query Frame = 1
Query: 298 DADRGMMETARVLGYFALWYALNVWYNIVNKRVLNAIHLPVSIAVLQLGIGSLWVAAQWTLGVRTRPGKLTRSGLSRLTPVAFFHGGGQLATVLSLGAGAVSFTHVVKAMEPFFSALVAAVWFRQVFRWQVYASLVPVVAGVALACAKEINFSWLSFLAAMISNLLFACRSNFSKALMIRPPTQGVSSVSSANLYGLVTLTAFVMFAPVAAIAGWGKWRTTWELALRQGHQGKALALSVLLSGISHYLNNEV 1053
+ G++ T +V F +WYA N+ YNI NK++LNA+ P ++AV+QLG+G L++ W +R P KL+ + L P+A HG G L TV+SLGAGAVSFTH+VKA EPFFS +++A++ + F VY +L+PVV GV +A E++FSW++FL AM SN F+ R+ FSK M +P QG ++ +ANLYG++T+ +F+M P A + K + W A+ GH L + L+SG+ +YL NEV
Sbjct: 61 EGSSGLLNTLKVGFLFGVWYAFNIVYNISNKKILNALPFPWTMAVVQLGVGLLYLLPLWMSPLRKAP-KLSSENIKALMPIALMHGIGHLCTVISLGAGAVSFTHIVKAAEPFFSTVMSAIFTKSYFPVPVYLALLPVVGGVGIASLTELSFSWVAFLNAMGSNTAFSLRAIFSKKAMEKP--QG-ENMGAANLYGVLTIMSFLMLLPFALVLEGAKLKGGWAAAIAAGHTANYLLKTSLVSGLFYYLYNEV 308
BLAST of mRNA_H-elongata_contig71856.14865.1 vs. uniprot
Match: A0A7S1XYR7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYR7_9STRA) HSP 1 Score: 207 bits (526), Expect = 3.270e-60 Identity = 115/250 (46.00%), Postives = 162/250 (64.80%), Query Frame = 1
Query: 310 GMMETARVLGYFALWYALNVWYNIVNKRVLNAIHLPVSIAVLQLGIGSLWVAAQWTL--GVRTRPGKLTRSGLSRLTPVAFFHGGGQLATVLSLGAGAVSFTHVVKAMEPFFSALVAAVWFRQVFRWQVYASLVPVVAGVALACAKEINFSWLSFLAAMISNLLFACRSNFSKALMIRPPTQGVSSVSSANLYGLVTLTAFVMFAPVAAIAGWGKWRTTWELALRQGHQGKALALSVLLSGISHYLNNEV 1053
GM+ T ++ YF LWYA NV YN+ NK+VLNA+ LP +I+ QLGIG L+V W L G R P LT + L P+A H G L TV+SL AG+VSFTH+VKA EPFFS +++AV+ + F+ VY +L+P+V GVA+A KE++F+W+SFL AM SN F+ R+ FSK M P + ++S+ NLY ++T+ +F+ AP+A + K W+ AL G + L +L+SG+S+YL NEV
Sbjct: 67 GMLHTLKIGVYFFLWYAFNVVYNLTNKQVLNALPLPWTISAAQLGIGLLYVFPVWLLKLGGRKAP-VLTMENVKTLMPIATCHTTGHLCTVISLSAGSVSFTHIVKAAEPFFSTVMSAVFLKSFFKLPVYLTLIPIVVGVAMASLKELSFTWVSFLNAMASNTAFSMRAIFSKKQMNAPMGE---NMSAPNLYAVLTIMSFLGLAPLAGVIEGRKIGPAWDSALSAGLESSELTKKILMSGLSYYLYNEV 312 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71856.14865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig71856.14865.1 >prot_H-elongata_contig71856.14865.1 ID=prot_H-elongata_contig71856.14865.1|Name=mRNA_H-elongata_contig71856.14865.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=351bp MRRFFLLLLVYLLAPPCFSSDFMTVKRRGKHAKRHERFLMVPSTSRSHTRback to top mRNA from alignment at H-elongata_contig71856:625..3055+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig71856.14865.1 ID=mRNA_H-elongata_contig71856.14865.1|Name=mRNA_H-elongata_contig71856.14865.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2431bp|location=Sequence derived from alignment at H-elongata_contig71856:625..3055+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig71856:625..3055+ >mRNA_H-elongata_contig71856.14865.1 ID=mRNA_H-elongata_contig71856.14865.1|Name=mRNA_H-elongata_contig71856.14865.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2106bp|location=Sequence derived from alignment at H-elongata_contig71856:625..3055+ (Himanthalia elongata Himel1 dioecious)back to top |