mRNA_H-elongata_contig71852.14864.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71852.14864.1
Unique NamemRNA_H-elongata_contig71852.14864.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig71852.14864.1 vs. uniprot
Match: D7FX01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX01_ECTSI)

HSP 1 Score: 350 bits (899), Expect = 5.690e-116
Identity = 178/231 (77.06%), Postives = 203/231 (87.88%), Query Frame = 1
Query:    1 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGALLPYEGNYSSWLVQKQKRLDMEHSKQAQVAKRLEAELEWIRNGRASVSKARAKNYEKALTERREGGAKLRQLAEGKIVIPPGPRLGRTVLTVNGLSKSYGERVLFSGLSLTVEAGSVVGVVGPNGSGKSTLFDLIAGLQEPDEGSVEWGASTKVGLVSQGRGDLDPKKTAYEEISQGQDTIQASEQKFGLR 693
            SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRG+LLP++GNYS+WLVQKQ RLD EHSKQAQVAKRLE+ELEWIR GRASVSKARA  YEKA+ ER+EG AKL+QL+EGKIVIPPGPRLGR+ LTV  LSK YG+R LFSG++ TV+ GSVVGVVGPNGSGK+TLF+LIAG++E D G+VEWG   KVGLVSQGR  LDP K+A EEIS+G DTIQ  +++  +R
Sbjct:  190 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGSLLPFKGNYSAWLVQKQNRLDREHSKQAQVAKRLESELEWIRTGRASVSKARANKYEKAVAERKEGAAKLQQLSEGKIVIPPGPRLGRSGLTVKDLSKKYGDRTLFSGVNFTVDPGSVVGVVGPNGSGKTTLFNLIAGVEEADGGTVEWGRLAKVGLVSQGRSGLDPDKSAIEEISEGGDTIQIGDRQVNVR 420          
BLAST of mRNA_H-elongata_contig71852.14864.1 vs. uniprot
Match: A0A6H5JQX9_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQX9_9PHAE)

HSP 1 Score: 354 bits (909), Expect = 2.080e-115
Identity = 180/231 (77.92%), Postives = 204/231 (88.31%), Query Frame = 1
Query:    1 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGALLPYEGNYSSWLVQKQKRLDMEHSKQAQVAKRLEAELEWIRNGRASVSKARAKNYEKALTERREGGAKLRQLAEGKIVIPPGPRLGRTVLTVNGLSKSYGERVLFSGLSLTVEAGSVVGVVGPNGSGKSTLFDLIAGLQEPDEGSVEWGASTKVGLVSQGRGDLDPKKTAYEEISQGQDTIQASEQKFGLR 693
            SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRG+LLP+ GNYS+WLVQKQ RLD EHSKQAQVAKRLE+ELEWIR GRASVSKARAKNYEKA+ ER+EG AKL+QL+EGKIVIPPGPRLGR+ LTV  LSK YG+R LFSG++ +V+ GSVVGVVGPNGSGK+TLF+LIAG++E D G+VEWG   KVGLVSQGR  LDP K+A EEIS+G DTIQ  ++K  +R
Sbjct:  363 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGSLLPFRGNYSAWLVQKQNRLDREHSKQAQVAKRLESELEWIRTGRASVSKARAKNYEKAVAERKEGSAKLQQLSEGKIVIPPGPRLGRSGLTVKDLSKKYGDRTLFSGVNFSVDPGSVVGVVGPNGSGKTTLFNLIAGVEEADGGTVEWGRLAKVGLVSQGRSGLDPDKSAIEEISEGGDTIQIGDRKVNVR 593          
BLAST of mRNA_H-elongata_contig71852.14864.1 vs. uniprot
Match: A0A835ZAC8_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAC8_9STRA)

HSP 1 Score: 246 bits (628), Expect = 6.590e-75
Identity = 128/221 (57.92%), Postives = 158/221 (71.49%), Query Frame = 1
Query:    7 RWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGALLPYEGNYSSWLVQKQKRLDMEHSKQAQVAKRLEAELEWI--RNGRASVSKARAKNYEKALTERREGGAKLRQLAEGKIVIPPGPRLGRTVLTVNGLSKSYGERVLFSGLSLTVEAGSVVGVVGPNGSGKSTLFDLIAGLQEPDEGSVEWGASTKVGLVSQGRGDLDPKKTAYEEISQGQDTI 663
            RWLE YL+AF+G VIS+THDRYFLDNVA WILE+DRGA +PYEGNYS+WL  KQ+RL++E   +A  AKRL  EL WI  R    + SKAR  +Y            +L +L  G+IVIP GPRLG +VL V  L K Y  RVLFSGLS ++E G+ VG+VG NG+GK+TLF++IAG + PD G+V WG +  VGLVSQ R  LDP KTAY EI+QG+DT+
Sbjct:  236 RWLETYLQAFRGMVISVTHDRYFLDNVASWILEIDRGATIPYEGNYSAWLAAKQRRLNVERRGEAAEAKRLARELNWIQTRGQAGNTSKARMASYTARADRVSSARNRLSKLEGGQIVIPAGPRLGNSVLEVRDLKKEYDGRVLFSGLSFSLEPGATVGIVGANGTGKTTLFNIIAGTETPDAGTVTWGETVSVGLVSQTRQGLDPNKTAYAEIAQGEDTV 456          
BLAST of mRNA_H-elongata_contig71852.14864.1 vs. uniprot
Match: A0A3S3QSR1_9DELT (Energy-dependent translational throttle protein EttA n=1 Tax=Candidatus Electrothrix aarhusiensis TaxID=1859131 RepID=A0A3S3QSR1_9DELT)

HSP 1 Score: 236 bits (602), Expect = 2.770e-71
Identity = 121/234 (51.71%), Postives = 168/234 (71.79%), Query Frame = 1
Query:    1 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGALLPYEGNYSSWLVQKQKRLDMEHSKQAQVAKRLEAELEWIR---NGRASVSKARAKNYEKALTERREGGAKLRQLAEGKIVIPPGPRLGRTVLTVNGLSKSYGERVLFSGLSLTVEAGSVVGVVGPNGSGKSTLFDLIAGLQEPDEGSVEWGASTKVGLVSQGRGDLDPKKTAYEEISQGQDTIQASEQKFGLR 693
            SV WLE +L+ ++GTVI++THDRYFLDNVAGW+LE+DRG  +P++GNYSSWL QKQKRL +E  K+++  + L  ELEWIR    GR + +KAR   YE+ L +  +G  +L++L   +I IPPGPRLG+ V+   G+ KSYG+R+L   L+ ++  G +VG+VGPNG+GK+TLF +I G +EPDEGS+  G + K+  V QGR +LDP KT +E IS+GQ+TI    Q+   R
Sbjct:  202 SVAWLEHHLQQYEGTVIAVTHDRYFLDNVAGWVLELDRGRGIPWKGNYSSWLEQKQKRLALEEKKESERQRTLSRELEWIRMSPKGRHAKAKARINQYEQLLNQ--DGNERLKKL---EIYIPPGPRLGKVVIEGEGIRKSYGDRILVEDLTFSLPPGGIVGIVGPNGAGKTTLFRMITGQEEPDEGSIRIGETVKLCYVDQGRDNLDPNKTIFETISEGQETIWLGTQEVNAR 430          
BLAST of mRNA_H-elongata_contig71852.14864.1 vs. uniprot
Match: W7TRE6_9STRA (Abc transporter atp-binding protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRE6_9STRA)

HSP 1 Score: 235 bits (600), Expect = 1.080e-70
Identity = 121/222 (54.50%), Postives = 160/222 (72.07%), Query Frame = 1
Query:    1 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGALLPYEGNYSSWLVQKQKRLDMEHSKQAQVAKRLEAELEWIRNGRASVSKARAKNYEKALTERREGGAKLRQLAEGKIVIPPGPRLGRTVLTVNGLSKSYGERVLFSGLSLTVEAGSVVGVVGPNGSGKSTLFDLIAGLQEPDEGSVEWGASTKVGLVSQGRG-DLDPKKTAYEEISQGQDTI 663
            SV WLE +L+ ++GTVI++THDRYFLDN+A W+LEVDRG+LLP++GNY+ WL  K  RLD+E  K+A  A+ L+AELEWIR      SKAR K  E    E++    K+ QL  GKIVIPPGPRLG  V+TV  LSK    +VLF  +S  +EAG++VGV+G NG GKSTLF+++ G  EPD GSV+ G++  +GLVSQ R  +LD +K+ YEE++Q +D I
Sbjct:  238 SVAWLERFLQEYRGTVIAVTHDRYFLDNIARWVLEVDRGSLLPFQGNYTQWLEHKAARLDLERGKEAAQARALQAELEWIRLRSKQASKARVKAVEVRRIEQQGLADKIHQLETGKIVIPPGPRLGDRVMTVENLSKRVSSKVLFDNVSFDLEAGAIVGVIGANGCGKSTLFNVLCGRAEPDAGSVQIGSTVSLGLVSQVRDQELDDRKSVYEEVAQSEDVI 459          
BLAST of mRNA_H-elongata_contig71852.14864.1 vs. uniprot
Match: A1ZL02_9BACT (Energy-dependent translational throttle protein EttA n=3 Tax=Cytophagales TaxID=768507 RepID=A1ZL02_9BACT)

HSP 1 Score: 233 bits (594), Expect = 3.810e-70
Identity = 127/235 (54.04%), Postives = 159/235 (67.66%), Query Frame = 1
Query:    1 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGALLPYEGNYSSWLVQKQKRLDMEHSKQAQVAKRLEAELEWIR---NGRASVSKARAKNYEKALTE-RREGGAKLRQLAEGKIVIPPGPRLGRTVLTVNGLSKSYGERVLFSGLSLTVEAGSVVGVVGPNGSGKSTLFDLIAGLQEPDEGSVEWGASTKVGLVSQGRGDLDPKKTAYEEISQGQDTIQASEQKFGLR 693
            SV WLE +L+ +KGTVI++THDRYFLDNVAGWILE+DRG  +P++GNYSSWL QKQKRL  E   +++  K LE ELEWIR     R S SKAR   YEK L E  RE  AKL      +I IPPGPRLG  V+ VNG+SK+YG+++LF GLS  +    +VG++GPNG+GK+TLF LI G + PDEGS E G +  +  V Q   DL P+ T YE IS G + IQ   ++   R
Sbjct:  201 SVHWLEQHLQQYKGTVIAVTHDRYFLDNVAGWILELDRGEGIPWKGNYSSWLDQKQKRLSEEEKTESKRMKTLERELEWIRMTPKARQSKSKARLSAYEKLLGEDAREKEAKL------EIFIPPGPRLGNKVIEVNGVSKAYGDKLLFEGLSFNLPPAGIVGIIGPNGAGKTTLFKLITGKETPDEGSFEVGETVDIAYVDQEHNDLKPEHTVYEAISGGNEIIQLGSKEMNAR 429          
BLAST of mRNA_H-elongata_contig71852.14864.1 vs. uniprot
Match: A0A399ZI34_9CHLR (Energy-dependent translational throttle protein EttA (Fragment) n=2 Tax=Anaerolineae TaxID=292625 RepID=A0A399ZI34_9CHLR)

HSP 1 Score: 226 bits (576), Expect = 1.960e-69
Identity = 121/234 (51.71%), Postives = 159/234 (67.95%), Query Frame = 1
Query:    1 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGALLPYEGNYSSWLVQKQKRLDMEHSKQAQVAKRLEAELEWIR---NGRASVSKARAKNYEKALTERREGGAKLRQLAEGKIVIPPGPRLGRTVLTVNGLSKSYGERVLFSGLSLTVEAGSVVGVVGPNGSGKSTLFDLIAGLQEPDEGSVEWGASTKVGLVSQGRGDLDPKKTAYEEISQGQDTIQASEQKFGLR 693
            SV WLE +LR +KGTVI++THDRYFLDNVAGWILE+DRG  +PY+GNYSSWL QKQ+R+ +E   +++  K LE ELEWIR     R S  +AR   YEK L +  E      +  E  I IPPGPRLG  V   + ++KS+ +R++  G S TV  GS+VG+VGPNG+GK+TL  +I G + PD GS++ G + K+  V Q R  LDP+KT YEEISQG DT++  ++K   R
Sbjct:   19 SVAWLEHHLRDYKGTVIAVTHDRYFLDNVAGWILELDRGFGIPYKGNYSSWLEQKQERIRLEEKAESKRQKTLERELEWIRMSPKARQSKGQARVSAYEKLLNQEAEA-----RREELDIYIPPGPRLGDVVFEFDKVTKSFDDRLILDGFSATVPPGSIVGIVGPNGAGKTTLLKMIIGKETPDSGSIKIGETVKLAYVDQSR-TLDPEKTVYEEISQGADTLELGKRKINAR 246          
BLAST of mRNA_H-elongata_contig71852.14864.1 vs. uniprot
Match: A0A7Y5DDE2_9BACT (Energy-dependent translational throttle protein EttA (Fragment) n=1 Tax=Nitrospira sp. TaxID=70125 RepID=A0A7Y5DDE2_9BACT)

HSP 1 Score: 227 bits (579), Expect = 4.120e-69
Identity = 116/234 (49.57%), Postives = 166/234 (70.94%), Query Frame = 1
Query:    1 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGALLPYEGNYSSWLVQKQKRLDMEHSKQAQVAKRLEAELEWIR---NGRASVSKARAKNYEKALTERREGGAKLRQLAEGKIVIPPGPRLGRTVLTVNGLSKSYGERVLFSGLSLTVEAGSVVGVVGPNGSGKSTLFDLIAGLQEPDEGSVEWGASTKVGLVSQGRGDLDPKKTAYEEISQGQDTIQASEQKFGLR 693
            SV+WLE +L+ +KGTVI++THDRYFLDNVAGWILE+DRG  +P++GNY+SWL QKQ RL+ E   +++  K LE ELEWIR    GR S  KAR   YE+ + +++E      Q A+ +I IPPGPRLG  V+   G+SK+YG++VL+  ++ ++  G +VGV+GPNG+GK+T+F +I G ++PD G+++ G + K+G V Q R  LDP K+ Y+ IS+GQDTI   + +   R
Sbjct:  203 SVQWLEQHLQQYKGTVIAVTHDRYFLDNVAGWILELDRGHGIPFQGNYTSWLEQKQVRLEKEEKTESKRRKSLEHELEWIRMSPKGRQSKGKARLNRYEELVNQKQE-----EQAADLEIYIPPGPRLGDVVVEAQGVSKAYGDKVLYENVNFSLPKGGIVGVIGPNGAGKTTMFRMIIGKEKPDTGAIKIGETVKLGYVDQDRS-LDPNKSVYDIISEGQDTIMLGKAEVNAR 430          
BLAST of mRNA_H-elongata_contig71852.14864.1 vs. uniprot
Match: E4TSB5_MARTH (Energy-dependent translational throttle protein EttA n=7 Tax=Bacteroidetes TaxID=976 RepID=E4TSB5_MARTH)

HSP 1 Score: 229 bits (585), Expect = 9.160e-69
Identity = 118/234 (50.43%), Postives = 164/234 (70.09%), Query Frame = 1
Query:    1 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGALLPYEGNYSSWLVQKQKRLDMEHSKQAQVAKRLEAELEWIR---NGRASVSKARAKNYEKALTERREGGAKLRQLAEGKIVIPPGPRLGRTVLTVNGLSKSYGERVLFSGLSLTVEAGSVVGVVGPNGSGKSTLFDLIAGLQEPDEGSVEWGASTKVGLVSQGRGDLDPKKTAYEEISQGQDTIQASEQKFGLR 693
            SV WLE +L+ +KGTVI++THDRYFLDNVAGWILE+DRG  +P++GNYSSWL QKQKRL  E   +++  K L+ ELEW+R     R + SKAR  +YEK L E  EG  K ++L   ++ IPPGPRLG  V+  NG++K+YG+++L+  L+ ++  G +VG++GPNG+GK+TLF LI G +EPD G+ E G + K+  V Q   +LDP K+ +E IS+G + IQ  + K   R
Sbjct:  204 SVHWLEHHLQQYKGTVIAVTHDRYFLDNVAGWILELDRGEGIPWKGNYSSWLDQKQKRLAQEEKSESKRQKTLQRELEWVRMAPKARQAKSKARLSSYEKMLDE--EGKEKEQKL---ELFIPPGPRLGTKVIEANGVAKAYGDKLLYEDLNFSLPQGGIVGIIGPNGAGKTTLFKLITGQEEPDAGNFEVGETVKISYVDQAHDNLDPNKSVWENISEGNEWIQLGKNKINSR 432          
BLAST of mRNA_H-elongata_contig71852.14864.1 vs. uniprot
Match: A0A3M8EMD4_DESBX (Energy-dependent translational throttle protein EttA n=1 Tax=Desulfuromonadales bacterium TaxID=2099678 RepID=A0A3M8EMD4_DESBX)

HSP 1 Score: 229 bits (585), Expect = 9.160e-69
Identity = 120/234 (51.28%), Postives = 167/234 (71.37%), Query Frame = 1
Query:    1 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGALLPYEGNYSSWLVQKQKRLDMEHSKQAQVAKRLEAELEWIR---NGRASVSKARAKNYEKALTERREGGAKLRQLAEGKIVIPPGPRLGRTVLTVNGLSKSYGERVLFSGLSLTVEAGSVVGVVGPNGSGKSTLFDLIAGLQEPDEGSVEWGASTKVGLVSQGRGDLDPKKTAYEEISQGQDTIQASEQKFGLR 693
            +V WLE +L+ + GTVI++THDRYFLDNVAGWILE+DRG  +P++GNYSSWL QK+KRL  E  ++++  K L+ ELEWI     GR + SKAR  +YE+ L++  E  A+ R+L   +I +PPGPRLG  V+    ++K YG+R+L+ GLSL +  G +VGV+GPNG+GK+TLF LI G ++PD GS   G + K+G V Q R  LDP K+ +EE+S+GQ+TIQ  +Q+   R
Sbjct:  202 TVAWLEHHLQGYAGTVIAVTHDRYFLDNVAGWILELDRGEGIPWKGNYSSWLEQKEKRLATEEKQESERRKTLQRELEWIGMSPKGRHAKSKARISSYEQLLSQ--ESEARGREL---EIYLPPGPRLGDIVIEAENVAKGYGDRLLYEGLSLRLPPGGIVGVIGPNGAGKTTLFRLITGQEQPDSGSFRIGDTVKLGYVDQSRDTLDPGKSIWEEVSEGQETIQLGKQQVNSR 430          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71852.14864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX01_ECTSI5.690e-11677.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQX9_9PHAE2.080e-11577.92ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A835ZAC8_9STRA6.590e-7557.92P-loop containing nucleoside triphosphate hydrolas... [more]
A0A3S3QSR1_9DELT2.770e-7151.71Energy-dependent translational throttle protein Et... [more]
W7TRE6_9STRA1.080e-7054.50Abc transporter atp-binding protein n=2 Tax=Nannoc... [more]
A1ZL02_9BACT3.810e-7054.04Energy-dependent translational throttle protein Et... [more]
A0A399ZI34_9CHLR1.960e-6951.71Energy-dependent translational throttle protein Et... [more]
A0A7Y5DDE2_9BACT4.120e-6949.57Energy-dependent translational throttle protein Et... [more]
E4TSB5_MARTH9.160e-6950.43Energy-dependent translational throttle protein Et... [more]
A0A3M8EMD4_DESBX9.160e-6951.28Energy-dependent translational throttle protein Et... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71852contigH-elongata_contig71852:408..3115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score355.1
Seed ortholog evalue2.4e-95
Seed eggNOG ortholog2880.D7FX01
EggNOG free text desc.ATPase activity
EggNOG OGsCOG0488@1,KOG0927@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size693
Cds size693
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71852.14864.1prot_H-elongata_contig71852.14864.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71852 408..3115 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931119.9780438-CDS-H-elongata_contig71852:407..5211622931119.9780438-CDS-H-elongata_contig71852:407..521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71852 408..521 -
1691679706.428144-CDS-H-elongata_contig71852:407..5211691679706.428144-CDS-H-elongata_contig71852:407..521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71852 408..521 -
1622931119.9981802-CDS-H-elongata_contig71852:828..9271622931119.9981802-CDS-H-elongata_contig71852:828..927Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71852 829..927 -
1691679706.4389932-CDS-H-elongata_contig71852:828..9271691679706.4389932-CDS-H-elongata_contig71852:828..927Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71852 829..927 -
1622931120.0159662-CDS-H-elongata_contig71852:1290..14261622931120.0159662-CDS-H-elongata_contig71852:1290..1426Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71852 1291..1426 -
1691679706.447755-CDS-H-elongata_contig71852:1290..14261691679706.447755-CDS-H-elongata_contig71852:1290..1426Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71852 1291..1426 -
1622931120.034059-CDS-H-elongata_contig71852:1764..19101622931120.034059-CDS-H-elongata_contig71852:1764..1910Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71852 1765..1910 -
1691679706.4563951-CDS-H-elongata_contig71852:1764..19101691679706.4563951-CDS-H-elongata_contig71852:1764..1910Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71852 1765..1910 -
1622931120.0530107-CDS-H-elongata_contig71852:2598..27281622931120.0530107-CDS-H-elongata_contig71852:2598..2728Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71852 2599..2728 -
1691679706.4648478-CDS-H-elongata_contig71852:2598..27281691679706.4648478-CDS-H-elongata_contig71852:2598..2728Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71852 2599..2728 -
1622931120.0672848-CDS-H-elongata_contig71852:3047..31151622931120.0672848-CDS-H-elongata_contig71852:3047..3115Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71852 3048..3115 -
1691679706.4738135-CDS-H-elongata_contig71852:3047..31151691679706.4738135-CDS-H-elongata_contig71852:3047..3115Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71852 3048..3115 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71852.14864.1

>prot_H-elongata_contig71852.14864.1 ID=prot_H-elongata_contig71852.14864.1|Name=mRNA_H-elongata_contig71852.14864.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=231bp
SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGALLPYEGNYSS
WLVQKQKRLDMEHSKQAQVAKRLEAELEWIRNGRASVSKARAKNYEKALT
ERREGGAKLRQLAEGKIVIPPGPRLGRTVLTVNGLSKSYGERVLFSGLSL
TVEAGSVVGVVGPNGSGKSTLFDLIAGLQEPDEGSVEWGASTKVGLVSQG
RGDLDPKKTAYEEISQGQDTIQASEQKFGLR
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mRNA from alignment at H-elongata_contig71852:408..3115-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71852.14864.1 ID=mRNA_H-elongata_contig71852.14864.1|Name=mRNA_H-elongata_contig71852.14864.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2708bp|location=Sequence derived from alignment at H-elongata_contig71852:408..3115- (Himanthalia elongata Himel1 dioecious)
TCGGTTCGATGGCTAGAAGACTACTTACGAGCTTTTAAGGGCACGGTGAT TAGCATTACTCACGACAGGTAATTTAATTTTCAAGAGGAATGTTCTCGCC CGCGGTCGCGCAACGGGCGGGAGAGGTTGTTGGGGAGAAAGACGGGGCCG TGTGGCGTTTGACAAGTTTGATCGATTCTTCCAAGTAGCAGTACCGCGCT CATGATTTGCGTGCGTCGTATTTTGGTTGTGCACTACTTCCAGCCTAGAC CTGACTCGCACGAACACGGCCGAACCTCGCGCTATTATTGATCGAATAAG GTGGAAAGGGGGCGTATCGCTTTGAAATTTTCTCCCTTCTCGCGTGGCTC TCCCTCCTTTGTGACGCTCTCTTTGCTGGTCTCGAAGGTACTTTTTGGAT AACGTGGCGGGCTGGATCTTGGAGGTTGACCGAGGAGCTCTTCTGCCCTA CGAAGGAAACTACTCGTCCTGGCTCGTGCAGAAACAGAAGAGGCTTGACA TGGAGCACTCGAAGCAGGTAAGTTCCGCGAAGAGGCGGACAAGTATTTAT TCTTACGTACCCCCCCCTCCGCCGCCGCACTTTTCCAAGGAGTGAAGCGA AGTGCCACATTCACTGCTTGGCAAGTATGACCGCCAATCATCAAGGGGTT GGTTGCTCGTGTTCACGGCGTCCATGTCGCCTTCTCTCCCACCCAACCCC GACCGCGCCTCCGCCCGTCCCAGTATGGCGGACAACTATAGTGATGGTCG TATCATACACAGTTACCTCGCAAGCAGCTCCGTGGTACCGTGGTGGAAAC GCACAACATCGAACTCCGTGCACGTGCAGTCTTTTATTATCTAGAGTATG CTCAAAGCAGGAAATAGTTCAGCATGAATCGTGCGTGTCGTAAACCGAAC GATGTCCTGTGTGTGTGTGTGTATTTATTAAATTGCACATAATCGCGCAA TCCGGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTATTAAA TTACGCATAACTGCGCATTCCGACCCTGTCATGCTAGTCATTCTAATCGG CTACACGCGTTGACCTATGTGTGTTTGTGTGTGTGTTTTATTTATTAAAT TGTACACAACCGCGCAATCCGGCCCTGCCATGCTAGTCATTCTAGGCTAC TCTCGCATTGATCCTTACAATGGGGATAATGTGTATGTGTGGGTGTACCC GGCAGGCCCAAGTGGCGAAACGCTTGGAAGCGGAGCTGGAGTGGATCCGG AATGGCCGGGCCAGCGTGAGCAAGGCTCGAGCCAAGAACTACGAAAAGGC GCTGACCGAGCGCAGAGAAGGGGGGGCAAAGCTCCGGCAACTAGCTGAAG GGTGGGTAGGTCGACACCGCGCTCGCGCGTGGGTATTGGCGTTGGCTTTG ACCGGGTGGTGTCCCAGCAAAAGCCAAGCTTCACATCGAACAGTTGGCGT AACCGGTCCGGCTGTCTCTACCCTTACATCTCTCTCTCTTTCGCCCTCTC AGTTTGTGTCCATTATCTCTACATTATATCTCTATTTTTACATATATCTA CATTATATATCTCGGACCTCTCCCTCCCTCTCTGTCATAGTCTCTCTTTC TCTAATTCGCTATTAATAGTGTTAATTGTATCTGGTACCCTTGGGATCGT ACATCACTCGGTGGCCGCTTCCGACGGCACGGGGTGCAGGAAGATCGTCA TACCGCCCGGGCCGCGACTAGGCCGGACGGTGCTGACGGTGAACGGCTTG TCAAAGAGCTACGGGGAGCGTGTGCTCTTCAGCGGCCTCAGCCTCACGGT CGAGGCCGGGTCTGTGGTTGGCGTGGTAAGAATCGCGCGACAACAAGAGG ACCCCTTGTTTCCAATTGTTTTGTTTTTAAAGTATATCCCGGGGTCAAGA ATTGGTAGTTTATATGGAAACCCCATGGAGGCTGTATATTTTCTGGATTT TGAATCAAAGCAGGTGATTGGAAGACACTAAACGATGAATAAGAACGTGA GCATTTGGCAAGTAATGTTATTAAAGTTCTAGCAAGCGGCTAGATGTGCA AGAGTGCCCGTAATCCCTGCCATCGCCGAGGCAGCGCGTTTTGAATGCTA AGGTTCGGAGGGTTGCTCGTCGTAACCGTCGTTTTGTTTACTCTTTTAAT TTCGTTTCTTTTTTAATGTGCCGCTCGCGTTCGTCAAGGTGGGGCCGAAC GGATCTGGCAAGTCGACGCTGTTCGACCTCATCGCAGGCCTGCAGGAGCC TGACGAGGGCAGTGTGGAGTGGGGGGCCTCGACGAAGGTGCGAGCTCCTG TGTGCATGCTGGAAACAGGGGGGGGGGGGTCGGTGGTCGTCGCCGAGGAT CGGAGTTCGCAAGAGCCTCTCGGAGCGATGTACACTAAATAACGAAAAAC CTTCCCCCTTCCCGACAGCCCCCGGCGTCGCTGCCACCGCGAGACAAGAG TCATCCGGAGGGCGCGCGTGTACGCGCGTTTGGGCCGCTACAGACAGAAA CCCTTCCTTTTGACCCTCTCGCTCGCCGCTCCCGGTCGATACGATATCTC GTGCCCCGATCCGCGTCTCTCCCCCGCTGTCTCGTCCGCCCAAGGTCGGA TTGGTAAGCCAGGGGAGAGGCGATCTGGACCCGAAGAAGACCGCGTACGA GGAGATATCGCAGGGGCAAGACACCATCCAGGCGAGCGAGCAAAAATTTG GTCTACGT
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Coding sequence (CDS) from alignment at H-elongata_contig71852:408..3115-

>mRNA_H-elongata_contig71852.14864.1 ID=mRNA_H-elongata_contig71852.14864.1|Name=mRNA_H-elongata_contig71852.14864.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1386bp|location=Sequence derived from alignment at H-elongata_contig71852:408..3115- (Himanthalia elongata Himel1 dioecious)
TCGGTTCGATGGCTAGAAGACTACTTACGAGCTTTTAAGGGCACGGTGAT
TAGCATTACTCACGACAGTCGGTTCGATGGCTAGAAGACTACTTACGAGC
TTTTAAGGGCACGGTGATTAGCATTACTCACGACAGGTACTTTTTGGATA
ACGTGGCGGGCTGGATCTTGGAGGTTGACCGAGGAGCTCTTCTGCCCTAC
GAAGGAAACTACTCGTCCTGGCTCGTGCAGAAACAGAAGAGGCTTGACAT
GGAGCACTCGAAGCAGGTACTTTTTGGATAACGTGGCGGGCTGGATCTTG
GAGGTTGACCGAGGAGCTCTTCTGCCCTACGAAGGAAACTACTCGTCCTG
GCTCGTGCAGAAACAGAAGAGGCTTGACATGGAGCACTCGAAGCAGGCCC
AAGTGGCGAAACGCTTGGAAGCGGAGCTGGAGTGGATCCGGAATGGCCGG
GCCAGCGTGAGCAAGGCTCGAGCCAAGAACTACGAAAAGGCGCTGACCGA
GCGCAGAGAAGGGGGGGCAAAGCTCCGGCAACTAGCTGAAGGGCCCAAGT
GGCGAAACGCTTGGAAGCGGAGCTGGAGTGGATCCGGAATGGCCGGGCCA
GCGTGAGCAAGGCTCGAGCCAAGAACTACGAAAAGGCGCTGACCGAGCGC
AGAGAAGGGGGGGCAAAGCTCCGGCAACTAGCTGAAGGGAAGATCGTCAT
ACCGCCCGGGCCGCGACTAGGCCGGACGGTGCTGACGGTGAACGGCTTGT
CAAAGAGCTACGGGGAGCGTGTGCTCTTCAGCGGCCTCAGCCTCACGGTC
GAGGCCGGGTCTGTGGTTGGCGTGGAAGATCGTCATACCGCCCGGGCCGC
GACTAGGCCGGACGGTGCTGACGGTGAACGGCTTGTCAAAGAGCTACGGG
GAGCGTGTGCTCTTCAGCGGCCTCAGCCTCACGGTCGAGGCCGGGTCTGT
GGTTGGCGTGGTGGGGCCGAACGGATCTGGCAAGTCGACGCTGTTCGACC
TCATCGCAGGCCTGCAGGAGCCTGACGAGGGCAGTGTGGAGTGGGGGGCC
TCGACGAAGGTGGGGCCGAACGGATCTGGCAAGTCGACGCTGTTCGACCT
CATCGCAGGCCTGCAGGAGCCTGACGAGGGCAGTGTGGAGTGGGGGGCCT
CGACGAAGGTCGGATTGGTAAGCCAGGGGAGAGGCGATCTGGACCCGAAG
AAGACCGCGTACGAGGAGATATCGCAGGGGCAAGACACCATCCAGGCGAG
CGAGCAAAAATTTGGTCTACGTGTCGGATTGGTAAGCCAGGGGAGAGGCG
ATCTGGACCCGAAGAAGACCGCGTACGAGGAGATATCGCAGGGGCAAGAC
ACCATCCAGGCGAGCGAGCAAAAATTTGGTCTACGT
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