mRNA_H-elongata_contig71852.14864.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig71852.14864.1 vs. uniprot
Match: D7FX01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX01_ECTSI) HSP 1 Score: 350 bits (899), Expect = 5.690e-116 Identity = 178/231 (77.06%), Postives = 203/231 (87.88%), Query Frame = 1
Query: 1 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGALLPYEGNYSSWLVQKQKRLDMEHSKQAQVAKRLEAELEWIRNGRASVSKARAKNYEKALTERREGGAKLRQLAEGKIVIPPGPRLGRTVLTVNGLSKSYGERVLFSGLSLTVEAGSVVGVVGPNGSGKSTLFDLIAGLQEPDEGSVEWGASTKVGLVSQGRGDLDPKKTAYEEISQGQDTIQASEQKFGLR 693
SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRG+LLP++GNYS+WLVQKQ RLD EHSKQAQVAKRLE+ELEWIR GRASVSKARA YEKA+ ER+EG AKL+QL+EGKIVIPPGPRLGR+ LTV LSK YG+R LFSG++ TV+ GSVVGVVGPNGSGK+TLF+LIAG++E D G+VEWG KVGLVSQGR LDP K+A EEIS+G DTIQ +++ +R
Sbjct: 190 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGSLLPFKGNYSAWLVQKQNRLDREHSKQAQVAKRLESELEWIRTGRASVSKARANKYEKAVAERKEGAAKLQQLSEGKIVIPPGPRLGRSGLTVKDLSKKYGDRTLFSGVNFTVDPGSVVGVVGPNGSGKTTLFNLIAGVEEADGGTVEWGRLAKVGLVSQGRSGLDPDKSAIEEISEGGDTIQIGDRQVNVR 420
BLAST of mRNA_H-elongata_contig71852.14864.1 vs. uniprot
Match: A0A6H5JQX9_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQX9_9PHAE) HSP 1 Score: 354 bits (909), Expect = 2.080e-115 Identity = 180/231 (77.92%), Postives = 204/231 (88.31%), Query Frame = 1
Query: 1 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGALLPYEGNYSSWLVQKQKRLDMEHSKQAQVAKRLEAELEWIRNGRASVSKARAKNYEKALTERREGGAKLRQLAEGKIVIPPGPRLGRTVLTVNGLSKSYGERVLFSGLSLTVEAGSVVGVVGPNGSGKSTLFDLIAGLQEPDEGSVEWGASTKVGLVSQGRGDLDPKKTAYEEISQGQDTIQASEQKFGLR 693
SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRG+LLP+ GNYS+WLVQKQ RLD EHSKQAQVAKRLE+ELEWIR GRASVSKARAKNYEKA+ ER+EG AKL+QL+EGKIVIPPGPRLGR+ LTV LSK YG+R LFSG++ +V+ GSVVGVVGPNGSGK+TLF+LIAG++E D G+VEWG KVGLVSQGR LDP K+A EEIS+G DTIQ ++K +R
Sbjct: 363 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGSLLPFRGNYSAWLVQKQNRLDREHSKQAQVAKRLESELEWIRTGRASVSKARAKNYEKAVAERKEGSAKLQQLSEGKIVIPPGPRLGRSGLTVKDLSKKYGDRTLFSGVNFSVDPGSVVGVVGPNGSGKTTLFNLIAGVEEADGGTVEWGRLAKVGLVSQGRSGLDPDKSAIEEISEGGDTIQIGDRKVNVR 593
BLAST of mRNA_H-elongata_contig71852.14864.1 vs. uniprot
Match: A0A835ZAC8_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAC8_9STRA) HSP 1 Score: 246 bits (628), Expect = 6.590e-75 Identity = 128/221 (57.92%), Postives = 158/221 (71.49%), Query Frame = 1
Query: 7 RWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGALLPYEGNYSSWLVQKQKRLDMEHSKQAQVAKRLEAELEWI--RNGRASVSKARAKNYEKALTERREGGAKLRQLAEGKIVIPPGPRLGRTVLTVNGLSKSYGERVLFSGLSLTVEAGSVVGVVGPNGSGKSTLFDLIAGLQEPDEGSVEWGASTKVGLVSQGRGDLDPKKTAYEEISQGQDTI 663
RWLE YL+AF+G VIS+THDRYFLDNVA WILE+DRGA +PYEGNYS+WL KQ+RL++E +A AKRL EL WI R + SKAR +Y +L +L G+IVIP GPRLG +VL V L K Y RVLFSGLS ++E G+ VG+VG NG+GK+TLF++IAG + PD G+V WG + VGLVSQ R LDP KTAY EI+QG+DT+
Sbjct: 236 RWLETYLQAFRGMVISVTHDRYFLDNVASWILEIDRGATIPYEGNYSAWLAAKQRRLNVERRGEAAEAKRLARELNWIQTRGQAGNTSKARMASYTARADRVSSARNRLSKLEGGQIVIPAGPRLGNSVLEVRDLKKEYDGRVLFSGLSFSLEPGATVGIVGANGTGKTTLFNIIAGTETPDAGTVTWGETVSVGLVSQTRQGLDPNKTAYAEIAQGEDTV 456
BLAST of mRNA_H-elongata_contig71852.14864.1 vs. uniprot
Match: A0A3S3QSR1_9DELT (Energy-dependent translational throttle protein EttA n=1 Tax=Candidatus Electrothrix aarhusiensis TaxID=1859131 RepID=A0A3S3QSR1_9DELT) HSP 1 Score: 236 bits (602), Expect = 2.770e-71 Identity = 121/234 (51.71%), Postives = 168/234 (71.79%), Query Frame = 1
Query: 1 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGALLPYEGNYSSWLVQKQKRLDMEHSKQAQVAKRLEAELEWIR---NGRASVSKARAKNYEKALTERREGGAKLRQLAEGKIVIPPGPRLGRTVLTVNGLSKSYGERVLFSGLSLTVEAGSVVGVVGPNGSGKSTLFDLIAGLQEPDEGSVEWGASTKVGLVSQGRGDLDPKKTAYEEISQGQDTIQASEQKFGLR 693
SV WLE +L+ ++GTVI++THDRYFLDNVAGW+LE+DRG +P++GNYSSWL QKQKRL +E K+++ + L ELEWIR GR + +KAR YE+ L + +G +L++L +I IPPGPRLG+ V+ G+ KSYG+R+L L+ ++ G +VG+VGPNG+GK+TLF +I G +EPDEGS+ G + K+ V QGR +LDP KT +E IS+GQ+TI Q+ R
Sbjct: 202 SVAWLEHHLQQYEGTVIAVTHDRYFLDNVAGWVLELDRGRGIPWKGNYSSWLEQKQKRLALEEKKESERQRTLSRELEWIRMSPKGRHAKAKARINQYEQLLNQ--DGNERLKKL---EIYIPPGPRLGKVVIEGEGIRKSYGDRILVEDLTFSLPPGGIVGIVGPNGAGKTTLFRMITGQEEPDEGSIRIGETVKLCYVDQGRDNLDPNKTIFETISEGQETIWLGTQEVNAR 430
BLAST of mRNA_H-elongata_contig71852.14864.1 vs. uniprot
Match: W7TRE6_9STRA (Abc transporter atp-binding protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRE6_9STRA) HSP 1 Score: 235 bits (600), Expect = 1.080e-70 Identity = 121/222 (54.50%), Postives = 160/222 (72.07%), Query Frame = 1
Query: 1 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGALLPYEGNYSSWLVQKQKRLDMEHSKQAQVAKRLEAELEWIRNGRASVSKARAKNYEKALTERREGGAKLRQLAEGKIVIPPGPRLGRTVLTVNGLSKSYGERVLFSGLSLTVEAGSVVGVVGPNGSGKSTLFDLIAGLQEPDEGSVEWGASTKVGLVSQGRG-DLDPKKTAYEEISQGQDTI 663
SV WLE +L+ ++GTVI++THDRYFLDN+A W+LEVDRG+LLP++GNY+ WL K RLD+E K+A A+ L+AELEWIR SKAR K E E++ K+ QL GKIVIPPGPRLG V+TV LSK +VLF +S +EAG++VGV+G NG GKSTLF+++ G EPD GSV+ G++ +GLVSQ R +LD +K+ YEE++Q +D I
Sbjct: 238 SVAWLERFLQEYRGTVIAVTHDRYFLDNIARWVLEVDRGSLLPFQGNYTQWLEHKAARLDLERGKEAAQARALQAELEWIRLRSKQASKARVKAVEVRRIEQQGLADKIHQLETGKIVIPPGPRLGDRVMTVENLSKRVSSKVLFDNVSFDLEAGAIVGVIGANGCGKSTLFNVLCGRAEPDAGSVQIGSTVSLGLVSQVRDQELDDRKSVYEEVAQSEDVI 459
BLAST of mRNA_H-elongata_contig71852.14864.1 vs. uniprot
Match: A1ZL02_9BACT (Energy-dependent translational throttle protein EttA n=3 Tax=Cytophagales TaxID=768507 RepID=A1ZL02_9BACT) HSP 1 Score: 233 bits (594), Expect = 3.810e-70 Identity = 127/235 (54.04%), Postives = 159/235 (67.66%), Query Frame = 1
Query: 1 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGALLPYEGNYSSWLVQKQKRLDMEHSKQAQVAKRLEAELEWIR---NGRASVSKARAKNYEKALTE-RREGGAKLRQLAEGKIVIPPGPRLGRTVLTVNGLSKSYGERVLFSGLSLTVEAGSVVGVVGPNGSGKSTLFDLIAGLQEPDEGSVEWGASTKVGLVSQGRGDLDPKKTAYEEISQGQDTIQASEQKFGLR 693
SV WLE +L+ +KGTVI++THDRYFLDNVAGWILE+DRG +P++GNYSSWL QKQKRL E +++ K LE ELEWIR R S SKAR YEK L E RE AKL +I IPPGPRLG V+ VNG+SK+YG+++LF GLS + +VG++GPNG+GK+TLF LI G + PDEGS E G + + V Q DL P+ T YE IS G + IQ ++ R
Sbjct: 201 SVHWLEQHLQQYKGTVIAVTHDRYFLDNVAGWILELDRGEGIPWKGNYSSWLDQKQKRLSEEEKTESKRMKTLERELEWIRMTPKARQSKSKARLSAYEKLLGEDAREKEAKL------EIFIPPGPRLGNKVIEVNGVSKAYGDKLLFEGLSFNLPPAGIVGIIGPNGAGKTTLFKLITGKETPDEGSFEVGETVDIAYVDQEHNDLKPEHTVYEAISGGNEIIQLGSKEMNAR 429
BLAST of mRNA_H-elongata_contig71852.14864.1 vs. uniprot
Match: A0A399ZI34_9CHLR (Energy-dependent translational throttle protein EttA (Fragment) n=2 Tax=Anaerolineae TaxID=292625 RepID=A0A399ZI34_9CHLR) HSP 1 Score: 226 bits (576), Expect = 1.960e-69 Identity = 121/234 (51.71%), Postives = 159/234 (67.95%), Query Frame = 1
Query: 1 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGALLPYEGNYSSWLVQKQKRLDMEHSKQAQVAKRLEAELEWIR---NGRASVSKARAKNYEKALTERREGGAKLRQLAEGKIVIPPGPRLGRTVLTVNGLSKSYGERVLFSGLSLTVEAGSVVGVVGPNGSGKSTLFDLIAGLQEPDEGSVEWGASTKVGLVSQGRGDLDPKKTAYEEISQGQDTIQASEQKFGLR 693
SV WLE +LR +KGTVI++THDRYFLDNVAGWILE+DRG +PY+GNYSSWL QKQ+R+ +E +++ K LE ELEWIR R S +AR YEK L + E + E I IPPGPRLG V + ++KS+ +R++ G S TV GS+VG+VGPNG+GK+TL +I G + PD GS++ G + K+ V Q R LDP+KT YEEISQG DT++ ++K R
Sbjct: 19 SVAWLEHHLRDYKGTVIAVTHDRYFLDNVAGWILELDRGFGIPYKGNYSSWLEQKQERIRLEEKAESKRQKTLERELEWIRMSPKARQSKGQARVSAYEKLLNQEAEA-----RREELDIYIPPGPRLGDVVFEFDKVTKSFDDRLILDGFSATVPPGSIVGIVGPNGAGKTTLLKMIIGKETPDSGSIKIGETVKLAYVDQSR-TLDPEKTVYEEISQGADTLELGKRKINAR 246
BLAST of mRNA_H-elongata_contig71852.14864.1 vs. uniprot
Match: A0A7Y5DDE2_9BACT (Energy-dependent translational throttle protein EttA (Fragment) n=1 Tax=Nitrospira sp. TaxID=70125 RepID=A0A7Y5DDE2_9BACT) HSP 1 Score: 227 bits (579), Expect = 4.120e-69 Identity = 116/234 (49.57%), Postives = 166/234 (70.94%), Query Frame = 1
Query: 1 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGALLPYEGNYSSWLVQKQKRLDMEHSKQAQVAKRLEAELEWIR---NGRASVSKARAKNYEKALTERREGGAKLRQLAEGKIVIPPGPRLGRTVLTVNGLSKSYGERVLFSGLSLTVEAGSVVGVVGPNGSGKSTLFDLIAGLQEPDEGSVEWGASTKVGLVSQGRGDLDPKKTAYEEISQGQDTIQASEQKFGLR 693
SV+WLE +L+ +KGTVI++THDRYFLDNVAGWILE+DRG +P++GNY+SWL QKQ RL+ E +++ K LE ELEWIR GR S KAR YE+ + +++E Q A+ +I IPPGPRLG V+ G+SK+YG++VL+ ++ ++ G +VGV+GPNG+GK+T+F +I G ++PD G+++ G + K+G V Q R LDP K+ Y+ IS+GQDTI + + R
Sbjct: 203 SVQWLEQHLQQYKGTVIAVTHDRYFLDNVAGWILELDRGHGIPFQGNYTSWLEQKQVRLEKEEKTESKRRKSLEHELEWIRMSPKGRQSKGKARLNRYEELVNQKQE-----EQAADLEIYIPPGPRLGDVVVEAQGVSKAYGDKVLYENVNFSLPKGGIVGVIGPNGAGKTTMFRMIIGKEKPDTGAIKIGETVKLGYVDQDRS-LDPNKSVYDIISEGQDTIMLGKAEVNAR 430
BLAST of mRNA_H-elongata_contig71852.14864.1 vs. uniprot
Match: E4TSB5_MARTH (Energy-dependent translational throttle protein EttA n=7 Tax=Bacteroidetes TaxID=976 RepID=E4TSB5_MARTH) HSP 1 Score: 229 bits (585), Expect = 9.160e-69 Identity = 118/234 (50.43%), Postives = 164/234 (70.09%), Query Frame = 1
Query: 1 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGALLPYEGNYSSWLVQKQKRLDMEHSKQAQVAKRLEAELEWIR---NGRASVSKARAKNYEKALTERREGGAKLRQLAEGKIVIPPGPRLGRTVLTVNGLSKSYGERVLFSGLSLTVEAGSVVGVVGPNGSGKSTLFDLIAGLQEPDEGSVEWGASTKVGLVSQGRGDLDPKKTAYEEISQGQDTIQASEQKFGLR 693
SV WLE +L+ +KGTVI++THDRYFLDNVAGWILE+DRG +P++GNYSSWL QKQKRL E +++ K L+ ELEW+R R + SKAR +YEK L E EG K ++L ++ IPPGPRLG V+ NG++K+YG+++L+ L+ ++ G +VG++GPNG+GK+TLF LI G +EPD G+ E G + K+ V Q +LDP K+ +E IS+G + IQ + K R
Sbjct: 204 SVHWLEHHLQQYKGTVIAVTHDRYFLDNVAGWILELDRGEGIPWKGNYSSWLDQKQKRLAQEEKSESKRQKTLQRELEWVRMAPKARQAKSKARLSSYEKMLDE--EGKEKEQKL---ELFIPPGPRLGTKVIEANGVAKAYGDKLLYEDLNFSLPQGGIVGIIGPNGAGKTTLFKLITGQEEPDAGNFEVGETVKISYVDQAHDNLDPNKSVWENISEGNEWIQLGKNKINSR 432
BLAST of mRNA_H-elongata_contig71852.14864.1 vs. uniprot
Match: A0A3M8EMD4_DESBX (Energy-dependent translational throttle protein EttA n=1 Tax=Desulfuromonadales bacterium TaxID=2099678 RepID=A0A3M8EMD4_DESBX) HSP 1 Score: 229 bits (585), Expect = 9.160e-69 Identity = 120/234 (51.28%), Postives = 167/234 (71.37%), Query Frame = 1
Query: 1 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGALLPYEGNYSSWLVQKQKRLDMEHSKQAQVAKRLEAELEWIR---NGRASVSKARAKNYEKALTERREGGAKLRQLAEGKIVIPPGPRLGRTVLTVNGLSKSYGERVLFSGLSLTVEAGSVVGVVGPNGSGKSTLFDLIAGLQEPDEGSVEWGASTKVGLVSQGRGDLDPKKTAYEEISQGQDTIQASEQKFGLR 693
+V WLE +L+ + GTVI++THDRYFLDNVAGWILE+DRG +P++GNYSSWL QK+KRL E ++++ K L+ ELEWI GR + SKAR +YE+ L++ E A+ R+L +I +PPGPRLG V+ ++K YG+R+L+ GLSL + G +VGV+GPNG+GK+TLF LI G ++PD GS G + K+G V Q R LDP K+ +EE+S+GQ+TIQ +Q+ R
Sbjct: 202 TVAWLEHHLQGYAGTVIAVTHDRYFLDNVAGWILELDRGEGIPWKGNYSSWLEQKEKRLATEEKQESERRKTLQRELEWIGMSPKGRHAKSKARISSYEQLLSQ--ESEARGREL---EIYLPPGPRLGDIVIEAENVAKGYGDRLLYEGLSLRLPPGGIVGVIGPNGAGKTTLFRLITGQEQPDSGSFRIGDTVKLGYVDQSRDTLDPGKSIWEEVSEGQETIQLGKQQVNSR 430 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71852.14864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig71852.14864.1 >prot_H-elongata_contig71852.14864.1 ID=prot_H-elongata_contig71852.14864.1|Name=mRNA_H-elongata_contig71852.14864.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=231bp SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGALLPYEGNYSSback to top mRNA from alignment at H-elongata_contig71852:408..3115- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig71852.14864.1 ID=mRNA_H-elongata_contig71852.14864.1|Name=mRNA_H-elongata_contig71852.14864.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2708bp|location=Sequence derived from alignment at H-elongata_contig71852:408..3115- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig71852:408..3115- >mRNA_H-elongata_contig71852.14864.1 ID=mRNA_H-elongata_contig71852.14864.1|Name=mRNA_H-elongata_contig71852.14864.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1386bp|location=Sequence derived from alignment at H-elongata_contig71852:408..3115- (Himanthalia elongata Himel1 dioecious)back to top |