mRNA_H-elongata_contig71849.14863.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig71849.14863.1 vs. uniprot
Match: A0A6H5L5L5_9PHAE (HMA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L5L5_9PHAE) HSP 1 Score: 67.8 bits (164), Expect = 7.490e-14 Identity = 37/45 (82.22%), Postives = 42/45 (93.33%), Query Frame = 1
Query: 4 GVSSVEADVQAKKVMVTSNGSTSKQAMLDALLKWSSASGKSVELA 138
GVS+VEADV AK V V+S+GST+KQAMLDALLKWS+ASGKSVELA
Sbjct: 29 GVSAVEADVSAKTVTVSSDGSTTKQAMLDALLKWSAASGKSVELA 73
BLAST of mRNA_H-elongata_contig71849.14863.1 vs. uniprot
Match: A0A835YZJ0_9STRA (Copper chaperone n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZJ0_9STRA) HSP 1 Score: 54.7 bits (130), Expect = 1.160e-8 Identity = 31/45 (68.89%), Postives = 36/45 (80.00%), Query Frame = 1
Query: 4 GVSSVEADVQAKKVMVTSNGSTSKQAMLDALLKWSSASGKSVELA 138
GVS+V DV AK V V+S+G+TS QAMLDAL WS+ASGK VELA
Sbjct: 30 GVSAVNTDVAAKTVTVSSDGTTSPQAMLDALKVWSAASGKPVELA 74
BLAST of mRNA_H-elongata_contig71849.14863.1 vs. uniprot
Match: A0A067CRL5_SAPPC (HMA domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CRL5_SAPPC) HSP 1 Score: 49.3 bits (116), Expect = 1.490e-6 Identity = 29/45 (64.44%), Postives = 36/45 (80.00%), Query Frame = 1
Query: 1 AGVSSVEADVQAKKVMVTSNGSTSKQAMLDALLKWSSASGKSVEL 135
AGV SV +++A++V+VT GS QAML ALLKWS+ASGKSVEL
Sbjct: 29 AGVKSVACNIEAQQVLVT--GSADAQAMLAALLKWSAASGKSVEL 71
BLAST of mRNA_H-elongata_contig71849.14863.1 vs. uniprot
Match: A0A1V9YG83_9STRA (HMA domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YG83_9STRA) HSP 1 Score: 48.5 bits (114), Expect = 2.920e-6 Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = 1
Query: 4 GVSSVEADVQAKKVMVTSNGSTSKQAMLDALLKWSSASGKSVELA 138
GV SV D+ AK V+VT G+ Q ML ALLKWS+ASGKSVELA
Sbjct: 30 GVKSVACDIDAKTVVVT--GTADPQVMLAALLKWSAASGKSVELA 72
BLAST of mRNA_H-elongata_contig71849.14863.1 vs. uniprot
Match: A0A6A3XNT5_9STRA (HMA domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3XNT5_9STRA) HSP 1 Score: 47.4 bits (111), Expect = 1.970e-5 Identity = 26/45 (57.78%), Postives = 35/45 (77.78%), Query Frame = 1
Query: 4 GVSSVEADVQAKKVMVTSNGSTSKQAMLDALLKWSSASGKSVELA 138
GV+SV+ DV+ ++++V G + AML+ALLKWS ASGKSVELA
Sbjct: 71 GVTSVKCDVEKQQILV--EGDADENAMLEALLKWSKASGKSVELA 113
BLAST of mRNA_H-elongata_contig71849.14863.1 vs. uniprot
Match: A0A2D4BLI7_PYTIN (HMA domain-containing protein n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BLI7_PYTIN) HSP 1 Score: 46.2 bits (108), Expect = 2.340e-5 Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 1
Query: 4 GVSSVEADVQAKKVMVTSNGSTSKQAMLDALLKWSSASGKSVELA 138
GV V+ D++ ++V+VT G Q MLDALLKWS ASGKSV LA
Sbjct: 29 GVQEVKCDIEKQQVLVT--GDADDQVMLDALLKWSQASGKSVALA 71
BLAST of mRNA_H-elongata_contig71849.14863.1 vs. uniprot
Match: K3W7R1_GLOUD (HMA domain-containing protein n=7 Tax=Oomycota TaxID=4762 RepID=K3W7R1_GLOUD) HSP 1 Score: 45.8 bits (107), Expect = 3.310e-5 Identity = 25/45 (55.56%), Postives = 34/45 (75.56%), Query Frame = 1
Query: 4 GVSSVEADVQAKKVMVTSNGSTSKQAMLDALLKWSSASGKSVELA 138
GV+ V+ DV+ ++++VT G + ML+ALLKWS ASGKSVELA
Sbjct: 29 GVTDVKCDVEKQQILVT--GEADETVMLEALLKWSKASGKSVELA 71
BLAST of mRNA_H-elongata_contig71849.14863.1 vs. uniprot
Match: A0A448ZPP4_9STRA (HMA domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZPP4_9STRA) HSP 1 Score: 45.1 bits (105), Expect = 6.970e-5 Identity = 25/45 (55.56%), Postives = 31/45 (68.89%), Query Frame = 1
Query: 4 GVSSVEADVQAKKVMVTSNGSTSKQAMLDALLKWSSASGKSVELA 138
GV+ + DV+AK +VT + S ML+ LLKWSSASGKSV LA
Sbjct: 28 GVTDIVTDVEAKSAVVTHDESVPPSLMLEKLLKWSSASGKSVALA 72 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71849.14863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig71849.14863.1 >prot_H-elongata_contig71849.14863.1 ID=prot_H-elongata_contig71849.14863.1|Name=mRNA_H-elongata_contig71849.14863.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp AGVSSVEADVQAKKVMVTSNGSTSKQAMLDALLKWSSASGKSVELAD*back to top mRNA from alignment at H-elongata_contig71849:1497..1640- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig71849.14863.1 ID=mRNA_H-elongata_contig71849.14863.1|Name=mRNA_H-elongata_contig71849.14863.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=144bp|location=Sequence derived from alignment at H-elongata_contig71849:1497..1640- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig71849:1497..1640- >mRNA_H-elongata_contig71849.14863.1 ID=mRNA_H-elongata_contig71849.14863.1|Name=mRNA_H-elongata_contig71849.14863.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig71849:1497..1640- (Himanthalia elongata Himel1 dioecious)back to top |