mRNA_H-elongata_contig71849.14863.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71849.14863.1
Unique NamemRNA_H-elongata_contig71849.14863.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig71849.14863.1 vs. uniprot
Match: A0A6H5L5L5_9PHAE (HMA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L5L5_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 7.490e-14
Identity = 37/45 (82.22%), Postives = 42/45 (93.33%), Query Frame = 1
Query:    4 GVSSVEADVQAKKVMVTSNGSTSKQAMLDALLKWSSASGKSVELA 138
            GVS+VEADV AK V V+S+GST+KQAMLDALLKWS+ASGKSVELA
Sbjct:   29 GVSAVEADVSAKTVTVSSDGSTTKQAMLDALLKWSAASGKSVELA 73          
BLAST of mRNA_H-elongata_contig71849.14863.1 vs. uniprot
Match: A0A835YZJ0_9STRA (Copper chaperone n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZJ0_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.160e-8
Identity = 31/45 (68.89%), Postives = 36/45 (80.00%), Query Frame = 1
Query:    4 GVSSVEADVQAKKVMVTSNGSTSKQAMLDALLKWSSASGKSVELA 138
            GVS+V  DV AK V V+S+G+TS QAMLDAL  WS+ASGK VELA
Sbjct:   30 GVSAVNTDVAAKTVTVSSDGTTSPQAMLDALKVWSAASGKPVELA 74          
BLAST of mRNA_H-elongata_contig71849.14863.1 vs. uniprot
Match: A0A067CRL5_SAPPC (HMA domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CRL5_SAPPC)

HSP 1 Score: 49.3 bits (116), Expect = 1.490e-6
Identity = 29/45 (64.44%), Postives = 36/45 (80.00%), Query Frame = 1
Query:    1 AGVSSVEADVQAKKVMVTSNGSTSKQAMLDALLKWSSASGKSVEL 135
            AGV SV  +++A++V+VT  GS   QAML ALLKWS+ASGKSVEL
Sbjct:   29 AGVKSVACNIEAQQVLVT--GSADAQAMLAALLKWSAASGKSVEL 71          
BLAST of mRNA_H-elongata_contig71849.14863.1 vs. uniprot
Match: A0A1V9YG83_9STRA (HMA domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YG83_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 2.920e-6
Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = 1
Query:    4 GVSSVEADVQAKKVMVTSNGSTSKQAMLDALLKWSSASGKSVELA 138
            GV SV  D+ AK V+VT  G+   Q ML ALLKWS+ASGKSVELA
Sbjct:   30 GVKSVACDIDAKTVVVT--GTADPQVMLAALLKWSAASGKSVELA 72          
BLAST of mRNA_H-elongata_contig71849.14863.1 vs. uniprot
Match: A0A6A3XNT5_9STRA (HMA domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3XNT5_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 1.970e-5
Identity = 26/45 (57.78%), Postives = 35/45 (77.78%), Query Frame = 1
Query:    4 GVSSVEADVQAKKVMVTSNGSTSKQAMLDALLKWSSASGKSVELA 138
            GV+SV+ DV+ ++++V   G   + AML+ALLKWS ASGKSVELA
Sbjct:   71 GVTSVKCDVEKQQILV--EGDADENAMLEALLKWSKASGKSVELA 113          
BLAST of mRNA_H-elongata_contig71849.14863.1 vs. uniprot
Match: A0A2D4BLI7_PYTIN (HMA domain-containing protein n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BLI7_PYTIN)

HSP 1 Score: 46.2 bits (108), Expect = 2.340e-5
Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 1
Query:    4 GVSSVEADVQAKKVMVTSNGSTSKQAMLDALLKWSSASGKSVELA 138
            GV  V+ D++ ++V+VT  G    Q MLDALLKWS ASGKSV LA
Sbjct:   29 GVQEVKCDIEKQQVLVT--GDADDQVMLDALLKWSQASGKSVALA 71          
BLAST of mRNA_H-elongata_contig71849.14863.1 vs. uniprot
Match: K3W7R1_GLOUD (HMA domain-containing protein n=7 Tax=Oomycota TaxID=4762 RepID=K3W7R1_GLOUD)

HSP 1 Score: 45.8 bits (107), Expect = 3.310e-5
Identity = 25/45 (55.56%), Postives = 34/45 (75.56%), Query Frame = 1
Query:    4 GVSSVEADVQAKKVMVTSNGSTSKQAMLDALLKWSSASGKSVELA 138
            GV+ V+ DV+ ++++VT  G   +  ML+ALLKWS ASGKSVELA
Sbjct:   29 GVTDVKCDVEKQQILVT--GEADETVMLEALLKWSKASGKSVELA 71          
BLAST of mRNA_H-elongata_contig71849.14863.1 vs. uniprot
Match: A0A448ZPP4_9STRA (HMA domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZPP4_9STRA)

HSP 1 Score: 45.1 bits (105), Expect = 6.970e-5
Identity = 25/45 (55.56%), Postives = 31/45 (68.89%), Query Frame = 1
Query:    4 GVSSVEADVQAKKVMVTSNGSTSKQAMLDALLKWSSASGKSVELA 138
            GV+ +  DV+AK  +VT + S     ML+ LLKWSSASGKSV LA
Sbjct:   28 GVTDIVTDVEAKSAVVTHDESVPPSLMLEKLLKWSSASGKSVALA 72          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71849.14863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5L5L5_9PHAE7.490e-1482.22HMA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YZJ0_9STRA1.160e-868.89Copper chaperone n=1 Tax=Tribonema minus TaxID=303... [more]
A0A067CRL5_SAPPC1.490e-664.44HMA domain-containing protein n=2 Tax=Saprolegnia ... [more]
A0A1V9YG83_9STRA2.920e-664.44HMA domain-containing protein n=1 Tax=Achlya hypog... [more]
A0A6A3XNT5_9STRA1.970e-557.78HMA domain-containing protein n=3 Tax=Phytophthora... [more]
A0A2D4BLI7_PYTIN2.340e-557.78HMA domain-containing protein n=2 Tax=Pythium TaxI... [more]
K3W7R1_GLOUD3.310e-555.56HMA domain-containing protein n=7 Tax=Oomycota Tax... [more]
A0A448ZPP4_9STRA6.970e-555.56HMA domain-containing protein n=1 Tax=Pseudo-nitzs... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71849contigH-elongata_contig71849:1497..1640 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptioncopper chaperone
Ec32 orthologEc-15_003910.1
Exons1
Model size144
Cds size144
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931119.9206986-CDS-H-elongata_contig71849:1496..16401622931119.9206986-CDS-H-elongata_contig71849:1496..1640Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71849 1497..1640 -
1691679706.417687-CDS-H-elongata_contig71849:1496..16401691679706.417687-CDS-H-elongata_contig71849:1496..1640Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71849 1497..1640 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71849.14863.1prot_H-elongata_contig71849.14863.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71849 1497..1640 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71849.14863.1

>prot_H-elongata_contig71849.14863.1 ID=prot_H-elongata_contig71849.14863.1|Name=mRNA_H-elongata_contig71849.14863.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
AGVSSVEADVQAKKVMVTSNGSTSKQAMLDALLKWSSASGKSVELAD*
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mRNA from alignment at H-elongata_contig71849:1497..1640-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71849.14863.1 ID=mRNA_H-elongata_contig71849.14863.1|Name=mRNA_H-elongata_contig71849.14863.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=144bp|location=Sequence derived from alignment at H-elongata_contig71849:1497..1640- (Himanthalia elongata Himel1 dioecious)
GCAGGAGTCTCGTCGGTGGAGGCGGACGTTCAAGCCAAGAAGGTGATGGT CACCAGCAATGGGAGCACTTCGAAGCAGGCCATGCTCGACGCGCTCCTCA AGTGGTCTTCCGCCAGTGGAAAAAGCGTAGAGCTCGCAGATTAA
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Coding sequence (CDS) from alignment at H-elongata_contig71849:1497..1640-

>mRNA_H-elongata_contig71849.14863.1 ID=mRNA_H-elongata_contig71849.14863.1|Name=mRNA_H-elongata_contig71849.14863.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig71849:1497..1640- (Himanthalia elongata Himel1 dioecious)
GCAGGAGTCTCGTCGGTGGAGGCGGACGTTCAAGCCAAGAAGGTGATGGT
CACCAGCAATGGGAGCACTTCGAAGCAGGCCATGCTCGACGCGCTCCTCA
AGTGGTCTTCCGCCAGTGGAAAAAGCGTAGAGCTCGCAGATTAAGCAGGA
GTCTCGTCGGTGGAGGCGGACGTTCAAGCCAAGAAGGTGATGGTCACCAG
CAATGGGAGCACTTCGAAGCAGGCCATGCTCGACGCGCTCCTCAAGTGGT
CTTCCGCCAGTGGAAAAAGCGTAGAGCTCGCAGATTAA
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