mRNA_H-elongata_contig71848.14862.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71848.14862.1
Unique NamemRNA_H-elongata_contig71848.14862.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig71848.14862.1 vs. uniprot
Match: D8LJQ2_ECTSI (Sulfotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ2_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 4.940e-47
Identity = 82/101 (81.19%), Postives = 88/101 (87.13%), Query Frame = 1
Query:    1 SLLGRGLYALQLQPWLEAFGPEQVKVLFLEEVVQSEDSFQEAMEGVFRHVGLPQCPVEDKEPKNKRDYPPIDPTMRRRLRAFYDPYDDALRQLLGRDSLPW 303
            SLLGRGLYALQLQPWLEAFG +Q+KVLFLEEVV+SEDS QEAM+GVF HVGLP  PVEDK PKN RDYPP+D  +RRRLR FY PYD ALRQLL RDSLPW
Sbjct:  447 SLLGRGLYALQLQPWLEAFGRDQIKVLFLEEVVKSEDSLQEAMDGVFEHVGLPPSPVEDKAPKNHRDYPPMDEGVRRRLRDFYAPYDAALRQLLRRDSLPW 547          
BLAST of mRNA_H-elongata_contig71848.14862.1 vs. uniprot
Match: A0A6H5KXX9_9PHAE (Asp_Arg_Hydrox domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXX9_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 2.480e-25
Identity = 52/67 (77.61%), Postives = 55/67 (82.09%), Query Frame = 1
Query:  103 SEDSFQEAMEGVFRHVGLPQCPVEDKEPKNKRDYPPIDPTMRRRLRAFYDPYDDALRQLLGRDSLPW 303
            SEDS QEAMEGVF HVGLP  PV+DK PKN RDYPP+D  +RRRLR FY PYD ALRQLL RDSLPW
Sbjct:  364 SEDSLQEAMEGVFEHVGLPPSPVKDKAPKNHRDYPPMDEGVRRRLRDFYAPYDAALRQLLRRDSLPW 430          
BLAST of mRNA_H-elongata_contig71848.14862.1 vs. uniprot
Match: A0A812UDT8_SYMMI (Kil1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UDT8_SYMMI)

HSP 1 Score: 94.0 bits (232), Expect = 1.800e-21
Identity = 46/101 (45.54%), Postives = 67/101 (66.34%), Query Frame = 1
Query:    1 SLLGRGLYALQLQPWLEAFGPEQVKVLFLEEVVQSEDSFQEAMEGVFRHVGLPQCPVEDKEPKNKRDYPPIDPTMRRRLRAFYDPYDDALRQLLGRDSLPW 303
            S++ RGLYALQL PW+E F  + +K+L L ++  + D  QE + GVF  +GLP   + D E KN R YP ++P +++RL  FY PY++ L +L+GRD L W
Sbjct:  136 SIVARGLYALQLLPWMEHFA-DHIKILSLSDIKGAPDQVQETLNGVFSFIGLPTSELTDFEAKNTRTYPDVEPEVKQRLADFYRPYNERLYELIGRD-LSW 234          
BLAST of mRNA_H-elongata_contig71848.14862.1 vs. uniprot
Match: W7U713_9STRA (Sulfotransferase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U713_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.020e-18
Identity = 48/101 (47.52%), Postives = 64/101 (63.37%), Query Frame = 1
Query:    1 SLLGRGLYALQLQPWLEAFGPEQVKVLFLEEVVQSEDSFQEAMEGVFRHVGLPQCPVEDKEPKNKRDYPPIDPTMRRRLRAFYDPYDDALRQLLGRDSLPW 303
            SLLGRGLYALQLQPWLEAFG +Q+ V+F+E++  S ++ Q  +  VF  +GLP   + D   KN R Y P+D   + RL AFY P++  L Q+L      W
Sbjct:  492 SLLGRGLYALQLQPWLEAFGRDQLMVMFMEDMA-SHNAVQAQLGKVFDFLGLPPHSIIDTHAKNTRAYTPMDERTKARLSAFYAPFNQQLFQILNVHERRW 591          
BLAST of mRNA_H-elongata_contig71848.14862.1 vs. uniprot
Match: A0A067BN53_SAPPC (Sulfotransfer_1 domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BN53_SAPPC)

HSP 1 Score: 82.4 bits (202), Expect = 4.420e-17
Identity = 42/101 (41.58%), Postives = 61/101 (60.40%), Query Frame = 1
Query:    1 SLLGRGLYALQLQPWLEAFGPEQVKVLFLEEVVQSEDSFQEAMEGVFRHVGLPQCPVEDKEPKNKRDYPPIDPTMRRRLRAFYDPYDDALRQLLGRDSLPW 303
            S +GRGLYALQL+ W EAF  +Q+ ++ ++++  S       M+ VF  + LP   +ED   KN R Y  + P  R RL+AFY P+++AL  +LGR S  W
Sbjct:  129 SFIGRGLYALQLKGWFEAFPKDQLHIVNMDDMKTS-TGLHAVMQDVFAFLELPPYTIEDSSAKNTRAYGALHPDTRARLQAFYAPFNEALADMLGRRSFAW 228          
BLAST of mRNA_H-elongata_contig71848.14862.1 vs. uniprot
Match: A0A067CLP6_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CLP6_SAPPC)

HSP 1 Score: 83.2 bits (204), Expect = 1.960e-16
Identity = 43/101 (42.57%), Postives = 61/101 (60.40%), Query Frame = 1
Query:    1 SLLGRGLYALQLQPWLEAFGPEQVKVLFLEEVVQSEDSFQEAMEGVFRHVGLPQCPVEDKEPKNKRDYPPIDPTMRRRLRAFYDPYDDALRQLLGRDSLPW 303
            S +GRGLYALQL+ W EAF  +Q+ ++ ++++  S       M+ VF  + LP   +ED   KN R Y  + P  R RL+AFY P+++AL  LLGR S  W
Sbjct:  421 SFIGRGLYALQLKGWFEAFPKDQLHIVNMDDMKTS-TGLHAVMQDVFAFLELPPYTIEDSSAKNTRAYGALHPDTRARLQAFYAPFNEALADLLGRRSFAW 520          
BLAST of mRNA_H-elongata_contig71848.14862.1 vs. uniprot
Match: A0A0P1AZF7_PLAHL ((Heparan sulfate)-glucosamine 3-sulfotransferase 1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AZF7_PLAHL)

HSP 1 Score: 82.0 bits (201), Expect = 5.040e-16
Identity = 45/97 (46.39%), Postives = 61/97 (62.89%), Query Frame = 1
Query:    1 SLLGRGLYALQLQPWLEAFGPEQVKVLFLEEVVQSEDSFQEAMEGVFRHVGLPQCPVEDKEPKNKRDYPPIDPTMRRRLRAFYDPYDDALRQLLGRD 291
            S L RGLYALQL  W+EA+G + V +L L++  +S ++    M+ VF  +GLP   ++D   KN R Y  ID  +R RL AFY PY++ L  LLGRD
Sbjct:  430 SFLARGLYALQLASWIEAYGIDNVLLLTLDDF-KSVENLYATMDKVFNFLGLPYHRIKDTSAKNTRRYSSIDEAVRVRLAAFYKPYNEKLYALLGRD 525          
BLAST of mRNA_H-elongata_contig71848.14862.1 vs. uniprot
Match: A0A7S2WGV5_9STRA (Hypothetical protein n=2 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WGV5_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 5.220e-16
Identity = 41/95 (43.16%), Postives = 60/95 (63.16%), Query Frame = 1
Query:    1 SLLGRGLYALQLQPWLEAFGPEQVKVLFLEEVVQSEDSFQEAMEGVFRHVGLPQCPVEDKEPKNKRDYPPIDPTMRRRLRAFYDPYDDALRQLLG 285
            S +GRGLYALQL+ W + F  EQ   L L+++ +     Q  M  VFR +G  +  + D EPKN R Y P+DP ++++L AFY+P++  L +LLG
Sbjct:  566 SYVGRGLYALQLKQWFKVFPREQFLFLKLDDLAKD---VQSEMNKVFRFIGCDEYQIHDTEPKNSRKYEPMDPEIKKKLEAFYEPHNKELVELLG 657          
BLAST of mRNA_H-elongata_contig71848.14862.1 vs. uniprot
Match: A0A3F2RKU7_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RKU7_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 6.880e-16
Identity = 46/101 (45.54%), Postives = 62/101 (61.39%), Query Frame = 1
Query:    1 SLLGRGLYALQLQPWLEAFGPEQVKVLFLEEVVQSEDSFQEAMEGVFRHVGLPQCPVEDKEPKNKRDYPPIDPTMRRRLRAFYDPYDDALRQLLGRDSLPW 303
            S + RGLYALQL  WLEA+G E V +L L+E+  SE      M+ VF+ + LP   ++D   KN R Y PID  +  +L AFY PY++ L  +LGR+ L W
Sbjct:  430 SFVVRGLYALQLIGWLEAYGKENVLLLTLDEIKTSE-GLHSTMDKVFKFLDLPYHRIKDTSAKNTRKYDPIDEAVHAKLSAFYAPYNEKLYTILGRN-LAW 528          
BLAST of mRNA_H-elongata_contig71848.14862.1 vs. uniprot
Match: H3GFQ8_PHYRM (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=H3GFQ8_PHYRM)

HSP 1 Score: 80.9 bits (198), Expect = 1.280e-15
Identity = 43/97 (44.33%), Postives = 59/97 (60.82%), Query Frame = 1
Query:    1 SLLGRGLYALQLQPWLEAFGPEQVKVLFLEEVVQSEDSFQEAMEGVFRHVGLPQCPVEDKEPKNKRDYPPIDPTMRRRLRAFYDPYDDALRQLLGRD 291
            S + RGLYALQL  W++A+G E V +L L+E   +E      M+ VF  + LP   ++D   KN R Y PID  +R +L AFY PY++ L  +LGRD
Sbjct:  430 SFVARGLYALQLAGWIQAYGKENVLLLTLDEFKTTE-KLHATMDKVFNFLDLPYHRIKDTSAKNTRKYDPIDDAVRAKLAAFYAPYNEKLYAILGRD 525          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71848.14862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJQ2_ECTSI4.940e-4781.19Sulfotransferase n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A6H5KXX9_9PHAE2.480e-2577.61Asp_Arg_Hydrox domain-containing protein n=1 Tax=E... [more]
A0A812UDT8_SYMMI1.800e-2145.54Kil1 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
W7U713_9STRA1.020e-1847.52Sulfotransferase n=1 Tax=Nannochloropsis gaditana ... [more]
A0A067BN53_SAPPC4.420e-1741.58Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]
A0A067CLP6_SAPPC1.960e-1642.57Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A0P1AZF7_PLAHL5.040e-1646.39(Heparan sulfate)-glucosamine 3-sulfotransferase 1... [more]
A0A7S2WGV5_9STRA5.220e-1643.16Hypothetical protein n=2 Tax=labyrinthulid quahog ... [more]
A0A3F2RKU7_9STRA6.880e-1645.54Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
H3GFQ8_PHYRM1.280e-1544.33Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71848contigH-elongata_contig71848:140..756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.9
Seed ortholog evalue2.5e-39
Seed eggNOG ortholog2880.D8LJQ2
EggNOG free text desc.N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity
EggNOG OGs2CN6N@1,2QU6N@2759
Ec32 ortholog descriptionSulfotransferase
Ec32 orthologEc-17_002890.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size315
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931119.8448586-CDS-H-elongata_contig71848:139..2411622931119.8448586-CDS-H-elongata_contig71848:139..241Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71848 140..241 +
1691679706.3878856-CDS-H-elongata_contig71848:139..2411691679706.3878856-CDS-H-elongata_contig71848:139..241Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71848 140..241 +
1622931119.8670805-CDS-H-elongata_contig71848:543..7561622931119.8670805-CDS-H-elongata_contig71848:543..756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71848 544..756 +
1691679706.4084568-CDS-H-elongata_contig71848:543..7561691679706.4084568-CDS-H-elongata_contig71848:543..756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71848 544..756 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71848.14862.1prot_H-elongata_contig71848.14862.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71848 140..756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71848.14862.1

>prot_H-elongata_contig71848.14862.1 ID=prot_H-elongata_contig71848.14862.1|Name=mRNA_H-elongata_contig71848.14862.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
SLLGRGLYALQLQPWLEAFGPEQVKVLFLEEVVQSEDSFQEAMEGVFRHV
GLPQCPVEDKEPKNKRDYPPIDPTMRRRLRAFYDPYDDALRQLLGRDSLP
WSGA*
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mRNA from alignment at H-elongata_contig71848:140..756+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71848.14862.1 ID=mRNA_H-elongata_contig71848.14862.1|Name=mRNA_H-elongata_contig71848.14862.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=617bp|location=Sequence derived from alignment at H-elongata_contig71848:140..756+ (Himanthalia elongata Himel1 dioecious)
AGCTTGCTGGGACGAGGACTGTACGCTCTGCAGCTCCAACCGTGGCTTGA GGCGTTCGGTCCGGAGCAGGTGAAGGTGTTATTCTTGGAGGAAGTAGTCC AGGTACGACGCCAAGCGTTTCGGTAGAGTTTGCTTTTAAGAGCCCGGAGC GATTTTTTACCGTGGCAGATAAGCCACCGCCCGAGACGATTTCCGAGACG ATTCCCAAGATCCTATTGAGAGCTTCTCGTTTCATTCAATCAATATCGCT TTGGGGGGTGGGGGGGGGGCGGGCGCTGTTGGGGCTCCGTTCACAGGAAG GGTCCCCAACGGATGTCGATGATTGGTACCTACCTTCGCCTCGCCCTCTT TGTGTGTATATATATATACTATGTACAAACTCCTCGATTCCCCCCGTACG CCAGTCTGAAGATTCCTTTCAAGAGGCAATGGAGGGCGTGTTCAGGCACG TTGGATTACCGCAGTGCCCCGTCGAGGACAAGGAGCCGAAGAACAAGAGG GACTACCCGCCGATCGACCCGACTATGCGGCGCCGGTTACGGGCCTTCTA CGACCCGTACGACGATGCTTTGCGGCAACTCCTGGGCAGAGACTCTTTGC CGTGGTCGGGGGCTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig71848:140..756+

>mRNA_H-elongata_contig71848.14862.1 ID=mRNA_H-elongata_contig71848.14862.1|Name=mRNA_H-elongata_contig71848.14862.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig71848:140..756+ (Himanthalia elongata Himel1 dioecious)
AGCTTGCTGGGACGAGGACTGTACGCTCTGCAGCTCCAACCGTGGCTTGA
GGCGTTCGGTCCGGAGCAGGTGAAGGTGTTATTCTTGGAGGAAGTAGTCC
AGAGCTTGCTGGGACGAGGACTGTACGCTCTGCAGCTCCAACCGTGGCTT
GAGGCGTTCGGTCCGGAGCAGGTGAAGGTGTTATTCTTGGAGGAAGTAGT
CCAGTCTGAAGATTCCTTTCAAGAGGCAATGGAGGGCGTGTTCAGGCACG
TTGGATTACCGCAGTGCCCCGTCGAGGACAAGGAGCCGAAGAACAAGAGG
GACTACCCGCCGATCGACCCGACTATGCGGCGCCGGTTACGGGCCTTCTA
CGACCCGTACGACGATGCTTTGCGGCAACTCCTGGGCAGAGACTCTTTGC
CGTGGTCGGGGGCTTGATCTGAAGATTCCTTTCAAGAGGCAATGGAGGGC
GTGTTCAGGCACGTTGGATTACCGCAGTGCCCCGTCGAGGACAAGGAGCC
GAAGAACAAGAGGGACTACCCGCCGATCGACCCGACTATGCGGCGCCGGT
TACGGGCCTTCTACGACCCGTACGACGATGCTTTGCGGCAACTCCTGGGC
AGAGACTCTTTGCCGTGGTCGGGGGCTTGA
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