mRNA_H-elongata_contig71847.14861.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71847.14861.1
Unique NamemRNA_H-elongata_contig71847.14861.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig71847.14861.1 vs. uniprot
Match: D8LKX0_ECTSI (GpcrRhopsn4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKX0_ECTSI)

HSP 1 Score: 346 bits (888), Expect = 2.740e-116
Identity = 173/204 (84.80%), Postives = 190/204 (93.14%), Query Frame = 1
Query:    1 SAAVNGRGMRMLDVIGEVLHWGGQLLVSYVLVGLAYGWTLSSKAVQKYVPDDKNIVYLLAGCLGFIHLMFVIFGRLSDNHYSKSHALDSPPAYFLVLVRLALLAVFLLGAVKTFEAEQNAVRRSFIGRLIVLGTLWFAAMPALVLVAMICAEYVQEPVVSVGGMLAQSLGLSVLAWLFLTRNEYYKMSSLAHTGMLPTNT-RID 609
            S A NG G  +LDV GEVLHWGGQLLVSYVLVGLAYGWTLSS+AVQKYVPDDK+IVYLLAGCLGF+HLMFVI GR+SD+H++KSH+LDS PAYFLVLVRLALL VFLLGA+KTFEAEQN+VRR FIGRL+VLG+LWFAAMP LVLVAMICAEYVQEPVV+VG +LAQSLGLSVL+WLFLTRNEYYKMSSLAHTGMLPTN  R+D
Sbjct:  228 SFAANGTGYVLLDVGGEVLHWGGQLLVSYVLVGLAYGWTLSSRAVQKYVPDDKSIVYLLAGCLGFLHLMFVILGRMSDDHHAKSHSLDSAPAYFLVLVRLALLGVFLLGALKTFEAEQNSVRRGFIGRLVVLGSLWFAAMPVLVLVAMICAEYVQEPVVAVGSLLAQSLGLSVLSWLFLTRNEYYKMSSLAHTGMLPTNNFRMD 431          
BLAST of mRNA_H-elongata_contig71847.14861.1 vs. uniprot
Match: A0A7S4CD68_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CD68_9EUGL)

HSP 1 Score: 112 bits (280), Expect = 1.410e-25
Identity = 69/216 (31.94%), Postives = 114/216 (52.78%), Query Frame = 1
Query:    7 AVNGRGMRM------LDVIGEVLHWGGQLLVSYVLVGLAYGWTLSSK------AVQKYV----------PDDKNIVYLLAGCLGFIHLMFVIFGRLSDNHYSKSHALDSPPAYFLVLVRLALLAVFLLGAVKTFEAEQNAVRRSFIGRLIVLGTLWFAAMPALVLVAMICAEYVQEPVVSVGGMLAQSLGLSVLAWLFLTRNEYYKMSSLAHTGML 588
            +++GRG+R       LD   ++L    +L++S+VL+ +A+GWTL++       A Q  +          P D     + A  L F+ ++  I GR  ++ +++ H  +  P Y L+ +R+ L   F LG + T    ++A    F+GRL +LGT WF A P LV+       Y +  VV+ G +  QS  L +  ++FL+R+EYYK+SSL+  G L
Sbjct:  228 SLDGRGLRFRHTWLALDFAADLLQGISELIISFVLICMAFGWTLTAPVSLIAGARQSGIMGGLAEIFGRPADLGAFLVFASIL-FVQVILQILGRQYEDDFTQFHDYEHAPGYTLMAMRVFLCLAFWLGTMTTIRGSRDANVAGFLGRLTLLGTTWFLAFPVLVVCTAFLPPYNRHSVVTSGAITMQSFALCLFLYMFLSRSEYYKISSLSKMGTL 442          
BLAST of mRNA_H-elongata_contig71847.14861.1 vs. uniprot
Match: S5CS41_EUGGR (G-protein-coupled-receptor n=1 Tax=Euglena gracilis TaxID=3039 RepID=S5CS41_EUGGR)

HSP 1 Score: 107 bits (267), Expect = 9.910e-24
Identity = 68/210 (32.38%), Postives = 109/210 (51.90%), Query Frame = 1
Query:   13 NGRGMRM------LDVIGEVLHWGGQLLVSYVLVGLAYGWTLSSKA---VQKYVPDDKNIVYLLAGCLGFIHLMFVIF---------GRLSDNHYSKSHALDSPPAYFLVLVRLALLAVFLLGAVKTFEAEQNAVRRSFIGRLIVLGTLWFAAMPALVLVAMICAEYVQEPVVSVGGMLAQSLGLSVLAWLFLTRNEYYKMSSLAHTGML 588
            +G+G+R       LD + ++L    +LL+S+VL+ +A+GWTLSS          P     ++      G   + F IF         GR  ++ +++ H  +  P Y L+ +R+     F +G + T  + +NA   SF+GRL  +GT WF A P LV+     A Y +  VV+ G ++ QS  L++   LFL+ +EYYK+SSL+  G L
Sbjct:  242 DGQGLRFRHTWLALDFLADMLQGLSELLISFVLICMAFGWTLSSPMSLITGARSPGGLAAIFSQPADAGAALVFFSIFLLQTVLQYLGRQYEDDFTQFHDYEHNPGYGLLALRVLSCVAFWIGTMGTIRSSRNADVASFLGRLTFIGTAWFLAFPILVISTSFMAPYNRHAVVAGGSIVLQSAALALFLKLFLSHSEYYKISSLSKMGTL 451          
BLAST of mRNA_H-elongata_contig71847.14861.1 vs. uniprot
Match: A0A813FXL4_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FXL4_POLGL)

HSP 1 Score: 97.1 bits (240), Expect = 8.740e-20
Identity = 63/198 (31.82%), Postives = 111/198 (56.06%), Query Frame = 1
Query:   13 NGRGMRMLDVIGEVLHWGGQLLVSYVLVGLAYGWTLSSKAVQKYVPDDKNIVYLLAGCLGFIHLMFVIFGRLSDNHYSKSHALDSPPAYFLVLVRLALLAVFLLGAVKTFEAEQNAVRRSFIGRLIVLGTLWFAAMPALVLVAMICAEYVQEPVVSVGGMLAQSLGLSVLAWLFLTRNEYYKMSSLAHTGMLPTNTRI 606
            +G G++ L+V+ E+L    Q+  + +L+ +  G+TL    +      + +++  +   +G IH+M V FG++ D+   K H  + P  + L+ +RL L   F L AV+    +  +  R+F+ +  + G+++F A P + L A + A Y+Q  V+SVG ML Q      LA LFLTR EY+K+S+L+ +  LP  T++
Sbjct:  910 DGDGIKPLEVLSEILFMLSQVTQTSLLILIGLGYTLLQSRI-----GELDLMIPMCFMVGVIHIMLVGFGKIKDDAAYKFHENEGPVGWILLTMRLLLYGWF-LWAVQASARDGGSKVRNFLDQFRIAGSIYFLAYPTIFLAAKMFAPYLQHGVMSVGLMLMQGGSNLWLASLFLTRGEYFKVSTLSSSD-LPGGTKL 1100          
BLAST of mRNA_H-elongata_contig71847.14861.1 vs. uniprot
Match: A0A7R9SVE3_9CHLO (Hypothetical protein n=1 Tax=Polyblepharides amylifera TaxID=1486889 RepID=A0A7R9SVE3_9CHLO)

HSP 1 Score: 92.4 bits (228), Expect = 1.770e-18
Identity = 63/227 (27.75%), Postives = 113/227 (49.78%), Query Frame = 1
Query:   13 NGRGMRM------LDVIGEVLHWGGQLLVSYVLVGLAYGWTLSSKAVQKYVP----------DDKNIVYLLA--GCLGFIHLMFVIFGRLSDNHYSKSHALDSPPAYFLVLVRLALLAVFLLGAVKTFEAEQNA----------------VRRSFIGRLIVLGTLWFAAMPALVLVAMICAE-YVQEPVVSVGGMLAQSLGLSVLAWLFLTRNEYYKMSSLAHTGML 588
            +G+G+R        D   +V     +LL+ ++L+ LA+GWTL  K  +  VP             + +  +A  G +    ++  + GR  ++ +++ H  + PP Y L+ +R+ L A+FL+G + T +                        SF+ +L+V+G++WF A P LV+ A    E Y + PVV+ G ++ QS+ L  ++ LFL  + Y K+S+LA+ G +
Sbjct:  174 DGKGLRWRHTTLATDFAAQVTLGLSELLIEFLLITLAFGWTLMPKG-EASVPLLGRFGLAMSSGSSWIIRMAFFGAIAMSQVVLAMLGRRYEDDFNQFHDFEHPPGYCLMALRVTLCALFLIGGLNTLKRSSGGNVASAGSGSTTPGAAVAVSSFMWKLLVMGSVWFLAFPVLVVCASPFFEPYNRHPVVTGGSIILQSVALGSISTLFLQNSSYLKLSTLANMGTI 399          
BLAST of mRNA_H-elongata_contig71847.14861.1 vs. uniprot
Match: A0A0V0QHZ3_PSEPJ (GpcrRhopsn4 domain-containing protein n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QHZ3_PSEPJ)

HSP 1 Score: 89.7 bits (221), Expect = 1.530e-17
Identity = 55/197 (27.92%), Postives = 107/197 (54.31%), Query Frame = 1
Query:    1 SAAVNGRGMRMLDVIGEVLHWGGQLLVSYVLVGLAYGWTLSSKAVQKYVPDDKNIVYLLAGCLGFIHLMFVIFGRLSDNHYSKSHALDSPPAYFLVLVRLALLAVFLLGAVKTFEAEQNAVRRSFIGRLIVLGTLWFAAMPALVLVAMICAEYVQEPVVSVGGMLAQSLGLSVLAWLFLTRNEYYKMSSLAHTGMLP 591
            S + NG+G+ +LD+  E+       L+S  L+ +++GWT++   +     D  +++  LA  +G I LM +  G+L+DN  SK H  D    Y ++++++ L   F  G +   + + +   +SFI +L   G+L+F A+P L++++   A Y +  ++++G +L Q+    VL +L  ++   Y   S+   G+LP
Sbjct:  210 SYSYNGQGLFVLDLFSEMTEVLSTFLLSVFLLLVSWGWTINYMEL-----DSFDVIVPLAILMGIIDLMIMGLGKLTDNSDSKYHLYDGWVGYVILVIQIGLFIYFQFG-LNNIKQKASIKLKSFIQQLSFFGSLYFLAIPILLVISWFFAFYDRNIIITLGTLLIQAAAFIVLIYLNTSQKSAYYKVSMKSQGILP 400          
BLAST of mRNA_H-elongata_contig71847.14861.1 vs. uniprot
Match: A0A7S1RV62_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1RV62_ALECA)

HSP 1 Score: 86.3 bits (212), Expect = 3.070e-16
Identity = 59/188 (31.38%), Postives = 104/188 (55.32%), Query Frame = 1
Query:   13 NGRGMRMLDVIGEVLHWGGQLLVSYVLVGLAYGWTLSSKAVQKYVPDDKNIVYLLAGCLGFIHLMFVIFGRLSDNHYSKSHALDSPPAYFLVLVRLALLAVFLLGAVKTFEAEQNAVRRSFI-GRLIVLGTLWFAAMPALVLVAMICAEYVQEPVVSVGGMLAQSLGLSVLAWLFLTRNEYYKMSSLA 573
            NG G++ +DV  E+     Q++ + +L+ +A G+TL    +      + +++  +   +  IH+M V FG+L D+     H  +    + L+++RL LL V+ L AV++  +E     RSF+ G+   +G+L+F + PA+ LV    A Y+Q  V++VG    Q+     L   FLTR EY+K+S+L+
Sbjct:  253 NGAGLKAMDVFSEIFFILSQVIQTSLLILIALGYTLLQSCI-----GELDLMIPVCFMVAVIHVMLVGFGKLKDDSAYAFHENEGILGWILLVLRL-LLYVWFLWAVQSSASEGGTRLRSFLLGQFRAVGSLYFLSYPAIFLVTKCFAPYLQHGVMTVGLEAMQAASSVWLCMNFLTRGEYFKVSTLS 434          
BLAST of mRNA_H-elongata_contig71847.14861.1 vs. uniprot
Match: A0A6P4XIG1_BRABE (integral membrane protein GPR180-like n=3 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4XIG1_BRABE)

HSP 1 Score: 80.5 bits (197), Expect = 3.240e-14
Identity = 52/188 (27.66%), Postives = 101/188 (53.72%), Query Frame = 1
Query:   13 NGRGMRMLDVIGEVLHWGGQLLVSYVLVGLAYGWTLS-SKAVQKYVPDDKNIVYLLAGCLGFIHLMFVIFGRLSDNHYSKSHALDSPPAYFLVLVRLALLAVFLLGAVKTFEAEQNAVRRSFIGRLIVLGTLWFAAMPALVLVAMICAEYVQEPVVSVGGMLAQSLGLSVLAWLFLTRNEYYKMSSLA 573
            +G G      + E+L     L++ Y+L+ +A GWTL+ SKA +     +  IV ++   LG +  +  ++ +   + +   HA  S     LV++RL L  VF     +T   E++++RR F         LWF + P +V++A +   +++  +V+ G ++ +SL + +L  LFL+R+ Y+++S+L+
Sbjct:  223 DGEGSPFFLNLSEMLEVLSALVMLYMLLNVAMGWTLAGSKATKLSNLKNNPIVTIVVLGLGAVQAVLALWEQFQSSEHQTYHAHRSAVGLSLVVLRLVLALVFGGAIYQTMSKERSSLRRDFYLSFFKSCLLWFLSYPVIVVIAYLFPGHLRNKIVTSGVVICESLAVVLLYKLFLSRSLYWEVSALS 410          
BLAST of mRNA_H-elongata_contig71847.14861.1 vs. uniprot
Match: C3ZWY0_BRAFL (GpcrRhopsn4 domain-containing protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3ZWY0_BRAFL)

HSP 1 Score: 80.1 bits (196), Expect = 4.410e-14
Identity = 52/188 (27.66%), Postives = 101/188 (53.72%), Query Frame = 1
Query:   13 NGRGMRMLDVIGEVLHWGGQLLVSYVLVGLAYGWTLS-SKAVQKYVPDDKNIVYLLAGCLGFIHLMFVIFGRLSDNHYSKSHALDSPPAYFLVLVRLALLAVFLLGAVKTFEAEQNAVRRSFIGRLIVLGTLWFAAMPALVLVAMICAEYVQEPVVSVGGMLAQSLGLSVLAWLFLTRNEYYKMSSLA 573
            +G G      + E+L     L++ Y+L+ +A GWTL+ SKA +     +  IV ++   LG + ++  ++ +   + +   HA  S     LV++RL L  VF     +T   E++++RR F         LWF   P +V++A +   +++  +V+ G ++ +SL + +L  LFL+R+ Y+++S+L+
Sbjct:  222 DGEGSPFFLNLSEMLEVLSALVMLYMLLNVAMGWTLAGSKATKLSNLKNNPIVTIVVLGLGAVQVILALWEQFQSSEHQTYHAHRSAVGLSLVVLRLMLALVFGGAIYQTMAKERSSLRRDFYLSFFKSCLLWFLCYPVIVVIAYLFPGHLRNKIVTSGVVICESLAVVLLYKLFLSRSLYWEVSALS 409          
BLAST of mRNA_H-elongata_contig71847.14861.1 vs. uniprot
Match: A0A7S1A1W1_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1A1W1_NOCSC)

HSP 1 Score: 77.8 bits (190), Expect = 2.790e-13
Identity = 55/199 (27.64%), Postives = 106/199 (53.27%), Query Frame = 1
Query:   10 VNGRGMRMLDVIGEVLHWGGQLLVSYVLVGLAYGWTLSSKAVQKYVPDDKNIVYLLAGCLGFIHLMFVIFGRLSDNHYSKSHALDSPPAYFLVLVRLALLAVFLLGAVKTFEAEQNAVRRSFIGRLIVLGTLWFAAMPALVLVAMICAEYVQEPVVSVGGMLAQSLGLSVLAWLFLTRNEYYKMSSLAHTGMLPTNTRI 606
            ++G+G R  +V+ E+L+   Q++ + +L+ ++ G+TLS   +      + +++  +   +G +HLM V FG+L D    + H  +    +  +++RL LL ++   AV     E     R F+ +  + G+++F   P + L A   + + Q  +++VG ++        LA LFLTR EY+K+SSL+ +  LP   +I
Sbjct:  225 MDGQGARPFEVMAEMLYVISQVIQTSILLLISLGYTLSQSKI-----GELDLMIPVCFMIGVLHLMLVGFGKLKDEGSYRYHENEGIMGWLQLVLRL-LLYIWFSWAVGETSKEGGMKLRDFLVKFRIAGSVYFLITPTMFLFARQFSPHTQFFLMAVGTLVTNLASDVWLATLFLTRGEYFKVSSLSSSD-LPGGVKI 416          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71847.14861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D8LKX0_ECTSI2.740e-11684.80GpcrRhopsn4 domain-containing protein n=2 Tax=Ecto... [more]
A0A7S4CD68_9EUGL1.410e-2531.94Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
S5CS41_EUGGR9.910e-2432.38G-protein-coupled-receptor n=1 Tax=Euglena gracili... [more]
A0A813FXL4_POLGL8.740e-2031.82Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
A0A7R9SVE3_9CHLO1.770e-1827.75Hypothetical protein n=1 Tax=Polyblepharides amyli... [more]
A0A0V0QHZ3_PSEPJ1.530e-1727.92GpcrRhopsn4 domain-containing protein n=1 Tax=Pseu... [more]
A0A7S1RV62_ALECA3.070e-1631.38Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A6P4XIG1_BRABE3.240e-1427.66integral membrane protein GPR180-like n=3 Tax=Bran... [more]
C3ZWY0_BRAFL4.410e-1427.66GpcrRhopsn4 domain-containing protein n=1 Tax=Bran... [more]
A0A7S1A1W1_NOCSC2.790e-1327.64Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71847contigH-elongata_contig71847:1352..3016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score337.0
Seed ortholog evalue5.7e-90
Seed eggNOG ortholog2880.D8LKX0
Preferred nameGPR180
EggNOG free text desc.response to pheromone
EggNOG OGsKOG4290@1,KOG4290@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons4
Model size612
Cds size588
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71847.14861.1prot_H-elongata_contig71847.14861.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71847 1352..2992 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931119.7253191-CDS-H-elongata_contig71847:1351..14921622931119.7253191-CDS-H-elongata_contig71847:1351..1492Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71847 1352..1492 -
1691679706.3294775-CDS-H-elongata_contig71847:1351..14921691679706.3294775-CDS-H-elongata_contig71847:1351..1492Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71847 1352..1492 -
1622931119.742452-CDS-H-elongata_contig71847:1928..21751622931119.742452-CDS-H-elongata_contig71847:1928..2175Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71847 1929..2175 -
1691679706.3438377-CDS-H-elongata_contig71847:1928..21751691679706.3438377-CDS-H-elongata_contig71847:1928..2175Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71847 1929..2175 -
1622931119.7635186-CDS-H-elongata_contig71847:2461..25261622931119.7635186-CDS-H-elongata_contig71847:2461..2526Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71847 2462..2526 -
1691679706.3521552-CDS-H-elongata_contig71847:2461..25261691679706.3521552-CDS-H-elongata_contig71847:2461..2526Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71847 2462..2526 -
1622931119.7795367-CDS-H-elongata_contig71847:2857..29921622931119.7795367-CDS-H-elongata_contig71847:2857..2992Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71847 2858..2992 -
1691679706.360335-CDS-H-elongata_contig71847:2857..29921691679706.360335-CDS-H-elongata_contig71847:2857..2992Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71847 2858..2992 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931119.7936149-UTR-H-elongata_contig71847:2992..30161622931119.7936149-UTR-H-elongata_contig71847:2992..3016Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71847 2993..3016 -
1691679706.3694026-UTR-H-elongata_contig71847:2992..30161691679706.3694026-UTR-H-elongata_contig71847:2992..3016Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71847 2993..3016 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71847.14861.1

>prot_H-elongata_contig71847.14861.1 ID=prot_H-elongata_contig71847.14861.1|Name=mRNA_H-elongata_contig71847.14861.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=196bp
MRMLDVIGEVLHWGGQLLVSYVLVGLAYGWTLSSKAVQKYVPDDKNIVYL
LAGCLGFIHLMFVIFGRLSDNHYSKSHALDSPPAYFLVLVRLALLAVFLL
GAVKTFEAEQNAVRRSFIGRLIVLGTLWFAAMPALVLVAMICAEYVQEPV
VSVGGMLAQSLGLSVLAWLFLTRNEYYKMSSLAHTGMLPTNTRID*
back to top

mRNA from alignment at H-elongata_contig71847:1352..3016-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71847.14861.1 ID=mRNA_H-elongata_contig71847.14861.1|Name=mRNA_H-elongata_contig71847.14861.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1665bp|location=Sequence derived from alignment at H-elongata_contig71847:1352..3016- (Himanthalia elongata Himel1 dioecious)
TCGGCCGCAGTCAACGGAAGGGGCATGCGCATGCTAGATGTAATAGGAGA GGTGCTCCACTGGGGTGGGCAGCTGCTGGTGTCTTACGTCCTTGTGGGTC TGGCGTACGGCTGGACCCTCTCGTCGAAGGCCGTGCAGAAGTATGTGCCT GACGATAAGGTAAAGTGAACGACGAAAAAGCCACATAAAATGCAACTGTT TACTCGAATAGGGGAAGAGATATGCGAGCATTACTTTATCAAGATGGAAA ACAATCACCGTTGAAAGCTAACCTTGGAGCTGGTCCACCACGACAGGTTG AAGGTCGAATATTTCTTTTCAACAAGGCGGGTGGGTGGGCAGAAAGCAAA AAAGCTCTATTGAATGCGAAGTATCCAGGGTCGCCGTAAAGTGTTGCAGG CCTGAAATCAACGGTACGCTTGGCAGTATCGTGCTCATCGTTGATGTTGG CTGATCGATAGGCTTGCCCTCGCGTGCCTTTCTCTCACAGAATATTGTCT ACCTCTTAGCCGGGTGCTTGGGGTTCATCCACCTCATGTTCGTCATCTTC GGAAGGTATACAAAAACGCTTCTCGCCGGCTCATAATTGCTTCTTTGGTG CTTACTCTGCGCGAAGGCAGTGGTCTGTTTTTGTGTGCCCTTTTTATTAA AAAACACACCGCTTCGTAGAAGGTGAGATCTGTTCGCTGTTCGCTGTTCG CTGTTCGCTGCATATGAGAGCTGTAAAGCGTTCGTATCGCGGGAAAAGAA AGGAGTCGAAATCCCCTCCCCATGTGGATTTTTTTAGAGCGGATTCGTGT GTCTTAGAATCGCTCCCATGTCAACCGCTATCGCGTGACAGGTTGAGCGA CAACCACTACTCGAAGTCGCACGCCCTAGATTCGCCCCCGGCGTACTTTT TGGTCCTTGTTCGACTAGCCCTGCTTGCCGTTTTTCTCCTGGGGGCCGTG AAGACCTTCGAGGCGGAGCAAAATGCCGTCAGGCGGAGCTTCATCGGGCG ACTGATCGTGCTCGGCACCCTGTGGTTCGCGGCGATGCCGGCCCTAGTCC TGGTGGCCATGATCTGTGCCGAGTACGTGCAGGAACCGGTGAGGAAGGAC GGGACGGGAGAAACATCAAGCGATGAGCGTGTTTGGCGATAACACGTACC ATGTACTCCATCGCCTCCTCTATGATGATCCATGTACCCCATCTGAACCA CTACGACAGGGGATGTGACGATTAGATCAGCGGGAGTTTGAACCACTATC GTTGAATTGCTGGAAATGAGATGAAAAATCGTCCACGATTATCTCCCGTG TATTGAAAGCGTGACTGCATTGTACGTGGGAGAAAATTCTTGGATTTTTC CGTTCGGAGACCATCGAGACTCAAGGCTTGTCCGAGAAGCTCGTGGGCTC TTTGAATCGCGTGTGGTTTGCTTGGGAAAGCCGAAACATGATTCGGTGAT GACGATCGTTAAGAGTGCAATGTAAAGCCGGCTTTTCCTCTGTTCTGCGC ATGCATGATTCTGTAACTACGCAGGTGGTTTCCGTCGGGGGAATGCTCGC CCAATCTCTGGGCCTGTCCGTCCTAGCGTGGCTCTTTCTTACACGAAACG AGTACTACAAGATGAGCAGCCTGGCACATACGGGGATGCTTCCGACCAAC ACCAGAATCGACTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig71847:1352..3016-

>mRNA_H-elongata_contig71847.14861.1 ID=mRNA_H-elongata_contig71847.14861.1|Name=mRNA_H-elongata_contig71847.14861.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1176bp|location=Sequence derived from alignment at H-elongata_contig71847:1352..3016- (Himanthalia elongata Himel1 dioecious)
ATGCGCATGCTAGATGTAATAGGAGAGGTGCTCCACTGGGGTGGGCAGCT
GCTGGTGTCTTACGTCCTTGTGGGTCTGGCGTACGGCTGGACCCTCTCGT
CGAAGGCCGTGCAGAAGTATGTGCCTGACGATAAGATGCGCATGCTAGAT
GTAATAGGAGAGGTGCTCCACTGGGGTGGGCAGCTGCTGGTGTCTTACGT
CCTTGTGGGTCTGGCGTACGGCTGGACCCTCTCGTCGAAGGCCGTGCAGA
AGTATGTGCCTGACGATAAGAATATTGTCTACCTCTTAGCCGGGTGCTTG
GGGTTCATCCACCTCATGTTCGTCATCTTCGGAAGAATATTGTCTACCTC
TTAGCCGGGTGCTTGGGGTTCATCCACCTCATGTTCGTCATCTTCGGAAG
GTTGAGCGACAACCACTACTCGAAGTCGCACGCCCTAGATTCGCCCCCGG
CGTACTTTTTGGTCCTTGTTCGACTAGCCCTGCTTGCCGTTTTTCTCCTG
GGGGCCGTGAAGACCTTCGAGGCGGAGCAAAATGCCGTCAGGCGGAGCTT
CATCGGGCGACTGATCGTGCTCGGCACCCTGTGGTTCGCGGCGATGCCGG
CCCTAGTCCTGGTGGCCATGATCTGTGCCGAGTACGTGCAGGAACCGGTT
GAGCGACAACCACTACTCGAAGTCGCACGCCCTAGATTCGCCCCCGGCGT
ACTTTTTGGTCCTTGTTCGACTAGCCCTGCTTGCCGTTTTTCTCCTGGGG
GCCGTGAAGACCTTCGAGGCGGAGCAAAATGCCGTCAGGCGGAGCTTCAT
CGGGCGACTGATCGTGCTCGGCACCCTGTGGTTCGCGGCGATGCCGGCCC
TAGTCCTGGTGGCCATGATCTGTGCCGAGTACGTGCAGGAACCGGTGGTT
TCCGTCGGGGGAATGCTCGCCCAATCTCTGGGCCTGTCCGTCCTAGCGTG
GCTCTTTCTTACACGAAACGAGTACTACAAGATGAGCAGCCTGGCACATA
CGGGGATGCTTCCGACCAACACCAGAATCGACTGAGTGGTTTCCGTCGGG
GGAATGCTCGCCCAATCTCTGGGCCTGTCCGTCCTAGCGTGGCTCTTTCT
TACACGAAACGAGTACTACAAGATGAGCAGCCTGGCACATACGGGGATGC
TTCCGACCAACACCAGAATCGACTGA
back to top