mRNA_H-elongata_contig71841.14860.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71841.14860.1
Unique NamemRNA_H-elongata_contig71841.14860.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig71841.14860.1 vs. uniprot
Match: D8LG66_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG66_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 1.250e-41
Identity = 75/151 (49.67%), Postives = 102/151 (67.55%), Query Frame = 1 
Query:    1 GTRTSALVVTGEVPLPERDAVATCQLVLQSLKINDDPMLNYGAAVVIKHASSRNPMRMMTPKELGAFLQNDPEMVMLIANSVCRPAERAKISPDGTRVLQRVELVGSRTMQDDGWVKYGGSMERVVDVHLVKE-DSCWMIDAFSFEPVVDR 450
            G +   LV   E+P P  D  + CQLV +SL+ NDDPML+YGAAV +K ASS++ +R MTP E GAFL+NDP+ V+L+ N+ C PAERAK+S DG +VLQ+VE+VG          +Y   + R+V+V L KE D CW +DA +F P V++
Sbjct:  119 GRKGRVLVRRKEIPSPAMDPASVCQLVFESLQNNDDPMLDYGAAVAVKFASSKSAVRNMTPAEYGAFLRNDPDQVLLVDNASCAPAERAKVSADGKQVLQKVEVVG----------RYPDVVRRIVEVQLTKEEDDCWRVDAMTFGPNVEQ 259
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BLAST of mRNA_H-elongata_contig71841.14860.1 vs. uniprot
Match: A0A7S1K9A5_9ALVE (Hypothetical protein n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1K9A5_9ALVE)

HSP 1 Score: 65.1 bits (157), Expect = 1.810e-10
Identity = 43/130 (33.08%), Postives = 61/130 (46.92%), Query Frame = 1 
Query:   31 GEVPLPERDAVATCQLVLQSLKINDDPMLNYGAAVVIKHASSRNPMRMMTPKELGAFLQNDPEMVMLIANSVCRPAERAKISPDGTRVLQRVELVGSRTMQDDGWVKYGGSMERVVDVHLVKEDSCWMID 420
            G++P P  DA    + VL +L+ NDDP L++GAAV IKHAS  N +    P + G++L+N  E  +L+           +   +    +QRV L G        W        + VD  L     CWMID
Sbjct:    8 GDLPQPGEDARVVIEKVLDALQTNDDPQLDHGAAVTIKHASRDNIISNFNPAQYGSYLRNS-EYRVLLNRDTFEFVGPPQYDSNKEHCVQRVVLEGHHP-NFQSWSDRE-FFRKEVDFRLSLHRGCWMID 134
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BLAST of mRNA_H-elongata_contig71841.14860.1 vs. uniprot
Match: A0A0G4GLI9_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GLI9_VITBC)

HSP 1 Score: 65.1 bits (157), Expect = 7.420e-10
Identity = 43/130 (33.08%), Postives = 61/130 (46.92%), Query Frame = 1 
Query:   31 GEVPLPERDAVATCQLVLQSLKINDDPMLNYGAAVVIKHASSRNPMRMMTPKELGAFLQNDPEMVMLIANSVCRPAERAKISPDGTRVLQRVELVGSRTMQDDGWVKYGGSMERVVDVHLVKEDSCWMID 420
            G++P P  DA    + VL +L+ NDDP L++GAAV IKHAS  N +    P + G++L+N  E  +L+           +   +    +QRV L G        W        + VD  L     CWMID
Sbjct:   91 GDLPQPGEDARVVIEKVLDALQTNDDPQLDHGAAVTIKHASRDNIISNFNPAQYGSYLRNS-EYRVLLNRDTFEFVGPPQYDSNKEHCVQRVVLEGHHP-NFQSWSDRE-FFRKEVDFRLSLHRGCWMID 217
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BLAST of mRNA_H-elongata_contig71841.14860.1 vs. uniprot
Match: A0A0G4G2B9_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G2B9_9ALVE)

HSP 1 Score: 52.4 bits (124), Expect = 3.720e-5
Identity = 34/113 (30.09%), Postives = 57/113 (50.44%), Query Frame = 1 
Query:   79 VLQSLKINDDPMLNYGAAVVIKHASSRNPMRMMTPKELGAFLQNDPEMVMLIANSVCRPAERAKISPDGTRVLQRVELVGSRTMQDDGWVKYGGSMERVVDVHLVKEDSCWMI 417
            V++ L++NDDP L++GAAVVI+H++  + +R +TP + G FL+       L+  +     E   ++ D T + Q V + G      D + +        V   + KED  W I
Sbjct:  131 VMEGLQVNDDPQLDHGAAVVIRHSAKGSILRNLTPSQYGRFLRRT-RYKCLLNFAEFDILEEPVLNEDKTELQQVVAIEGYLPNFQDYFARK--HFRENVKFDMKKEDGHWRI 240
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71841.14860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LG66_ECTSI1.250e-4149.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1K9A5_9ALVE1.810e-1033.08Hypothetical protein n=1 Tax=Vitrella brassicaform... [more]
A0A0G4GLI9_VITBC7.420e-1033.08Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A0G4G2B9_9ALVE3.720e-530.09Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71841contigH-elongata_contig71841:37..1403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score148.3
Seed ortholog evalue3e-33
Seed eggNOG ortholog2880.D8LG66
EggNOG OGs2E7RE@1,2SEA9@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_001780.1
Exons3
Model size465
Cds size465
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71841.14860.1prot_H-elongata_contig71841.14860.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71841 37..1403 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931119.646625-CDS-H-elongata_contig71841:36..1321622931119.646625-CDS-H-elongata_contig71841:36..132Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71841 37..132 +
1691679706.2980108-CDS-H-elongata_contig71841:36..1321691679706.2980108-CDS-H-elongata_contig71841:36..132Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71841 37..132 +
1622931119.6659832-CDS-H-elongata_contig71841:651..8251622931119.6659832-CDS-H-elongata_contig71841:651..825Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71841 652..825 +
1691679706.308918-CDS-H-elongata_contig71841:651..8251691679706.308918-CDS-H-elongata_contig71841:651..825Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71841 652..825 +
1622931119.6845417-CDS-H-elongata_contig71841:1208..14031622931119.6845417-CDS-H-elongata_contig71841:1208..1403Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71841 1209..1403 +
1691679706.3186064-CDS-H-elongata_contig71841:1208..14031691679706.3186064-CDS-H-elongata_contig71841:1208..1403Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71841 1209..1403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71841.14860.1

>prot_H-elongata_contig71841.14860.1 ID=prot_H-elongata_contig71841.14860.1|Name=mRNA_H-elongata_contig71841.14860.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=155bp
GTRTSALVVTGEVPLPERDAVATCQLVLQSLKINDDPMLNYGAAVVIKHA
SSRNPMRMMTPKELGAFLQNDPEMVMLIANSVCRPAERAKISPDGTRVLQ
RVELVGSRTMQDDGWVKYGGSMERVVDVHLVKEDSCWMIDAFSFEPVVDR
ALAG*
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mRNA from alignment at H-elongata_contig71841:37..1403+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71841.14860.1 ID=mRNA_H-elongata_contig71841.14860.1|Name=mRNA_H-elongata_contig71841.14860.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1367bp|location=Sequence derived from alignment at H-elongata_contig71841:37..1403+ (Himanthalia elongata Himel1 dioecious)
GGTACCCGCACGTCTGCCTTGGTCGTCACAGGAGAAGTACCGCTCCCCGA
GAGGGACGCAGTGGCGACATGCCAGCTCGTCCTGCAGTCCTTGAAGGTAC
GACAGGTTGCAGAGGTCGGGTGACTGAAAGAAACATAGTTAATATGCCCA
CCTACTGCGCCTGTGGGATGTAGCGCCCTTGTTACTTGTCCTGTTTTCAG
GAGGGAGAGGGGGGGGGAATCGAACATTAACTGACTGCGAAAAAAATTAA
CAACGTAGACGGAGTGGTTGGTGATGGGAGATAATTCGGCCGACATTTTT
CATGATTTTTCTTTCAAGCGCATGTCGTCGTCGTCAGCAAGCAGCAGCTA
TTCATCCGACCTCGTCTGATGTTTCGAGCGAGTGACCCGTGGCCGATTCT
TAAGCTGCCAATCGATGTATATTACCATCTTGTGGAAGAAATAGGAAGAG
AGTAACGTTGTGCAAACAGAGATAAAAAGAAACGCCAAGGGAAAATGTAA
GTCTGTGAGTTACATGACCGCGAGATTTGGCGATGCCCCCCCCCCCCCCC
CTCCCACCCCAATTATATTCCCCCTGGGGGTGTGGCGCCCGGGTTCTCTC
TCCCCCTGTTTGGAGATCAATGACGATCCGATGCTCAACTACGGTGCGGC
GGTGGTGATCAAGCATGCATCGTCGCGGAACCCCATGAGGATGATGACGC
CGAAGGAACTGGGCGCCTTTCTGCAGAACGATCCGGAGATGGTGATGCTG
ATTGCGAACTCCGTCTGCCGTCCCGCCGAGAGAGCCAAGGTGTGGGGAAA
AGAGGACGAGAAGAGAAAAAGCGGCTGCACCGTTGGTCTGCTGCACTGTA
CTCTACCAATCTGAGCGGTTTGAGACGAGGCGCGCAATGCGACGACTCAC
CATATGAAAGAGGAAAGAGGAGGAGGAGGAGGAGGCCAGTCGGAACACAA
ATAGTGGCTTTCGGCGAACACTTTGAGGGAGTCTTTGAGAGAGTATTCCG
CCTAGTGGTAACGGTGGTGGTTGATACGGTGACAGCGTTATTAGCGACCA
GCGCAGCACATATTCGATGTTTTTCTTTCGTGAAATTCACCCACGCGAAG
CAAAGCAAAGCAAAGCGATCCCGAACTATCTCCTCCCTTATTCATACATA
CGTACACCTTGCGCGTTCGAAGATTTCTCCGGACGGGACGCGAGTTCTCC
AAAGAGTGGAGCTCGTTGGGTCACGGACCATGCAGGATGACGGCTGGGTC
AAGTACGGTGGGAGCATGGAAAGAGTGGTAGACGTGCATCTGGTGAAAGA
GGACAGCTGCTGGATGATCGACGCCTTCTCGTTCGAGCCCGTGGTCGATA
GAGCGCTGGCCGGCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig71841:37..1403+

>mRNA_H-elongata_contig71841.14860.1 ID=mRNA_H-elongata_contig71841.14860.1|Name=mRNA_H-elongata_contig71841.14860.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=930bp|location=Sequence derived from alignment at H-elongata_contig71841:37..1403+ (Himanthalia elongata Himel1 dioecious)
GGTACCCGCACGTCTGCCTTGGTCGTCACAGGAGAAGTACCGCTCCCCGA
GAGGGACGCAGTGGCGACATGCCAGCTCGTCCTGCAGTCCTTGAAGGGTA
CCCGCACGTCTGCCTTGGTCGTCACAGGAGAAGTACCGCTCCCCGAGAGG
GACGCAGTGGCGACATGCCAGCTCGTCCTGCAGTCCTTGAAGATCAATGA
CGATCCGATGCTCAACTACGGTGCGGCGGTGGTGATCAAGCATGCATCGT
CGCGGAACCCCATGAGGATGATGACGCCGAAGGAACTGGGCGCCTTTCTG
CAGAACGATCCGGAGATGGTGATGCTGATTGCGAACTCCGTCTGCCGTCC
CGCCGAGAGAGCCAAGATCAATGACGATCCGATGCTCAACTACGGTGCGG
CGGTGGTGATCAAGCATGCATCGTCGCGGAACCCCATGAGGATGATGACG
CCGAAGGAACTGGGCGCCTTTCTGCAGAACGATCCGGAGATGGTGATGCT
GATTGCGAACTCCGTCTGCCGTCCCGCCGAGAGAGCCAAGATTTCTCCGG
ACGGGACGCGAGTTCTCCAAAGAGTGGAGCTCGTTGGGTCACGGACCATG
CAGGATGACGGCTGGGTCAAGTACGGTGGGAGCATGGAAAGAGTGGTAGA
CGTGCATCTGGTGAAAGAGGACAGCTGCTGGATGATCGACGCCTTCTCGT
TCGAGCCCGTGGTCGATAGAGCGCTGGCCGGCTGAATTTCTCCGGACGGG
ACGCGAGTTCTCCAAAGAGTGGAGCTCGTTGGGTCACGGACCATGCAGGA
TGACGGCTGGGTCAAGTACGGTGGGAGCATGGAAAGAGTGGTAGACGTGC
ATCTGGTGAAAGAGGACAGCTGCTGGATGATCGACGCCTTCTCGTTCGAG
CCCGTGGTCGATAGAGCGCTGGCCGGCTGA
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