mRNA_H-elongata_contig7182.14858.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7182.14858.1
Unique NamemRNA_H-elongata_contig7182.14858.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig7182.14858.1 vs. uniprot
Match: D7FMX5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMX5_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 1.200e-41
Identity = 94/143 (65.73%), Postives = 112/143 (78.32%), Query Frame = 3 
Query:    3 GELVGNGSLIIGPTAEVISNLRGLHEVYVEGILIGDCQCNKMQIRFSGCVTGNLQCGSLGMDPSVVLKGSANVNPREKPDKAKARATSGPARPRQQRVQSRGGISDEASSSSKALGSTSVISPESVPAREAAFDDLKAQKQKS 431
            GEL+GNGSLIIGPTAEVISNLRGL+EVYVEGILIGDC CNKMQIRF+GCVTGNL C SLGMDPSVVLKGSAN+NPREK +K K+++    A PR ++  SR        +SS+A  STSV+SPESV +R + +D  K +  +S
Sbjct:  107 GELIGNGSLIIGPTAEVISNLRGLNEVYVEGILIGDCSCNKMQIRFAGCVTGNLICASLGMDPSVVLKGSANINPREKVEKTKSKS----AAPRHKQG-SRSQTRSAEDTSSRA--STSVLSPESVGSRGSTYDKQKRRASES 242
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BLAST of mRNA_H-elongata_contig7182.14858.1 vs. uniprot
Match: D7FI98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI98_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 1.630e-8
Identity = 31/74 (41.89%), Postives = 45/74 (60.81%), Query Frame = 3 
Query:    3 GELVGNGSLIIGPTAEVISNLRGLHEVYVEGILIGDCQCNKMQIRFSGCVTGNLQCGSLGMDPSVVLKGSANVN 224
            G+LV  G L+IG T  V  N+  L EV  +G ++G+ Q  ++++R S  V GN+ C SL MDP V + G  NV+
Sbjct:   31 GQLVSTGDLVIGATGVVRGNIDHLREVVSDGTVVGNIQAERVRLRRSAIVIGNITCYSLSMDPDVSISGKLNVH 104
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BLAST of mRNA_H-elongata_contig7182.14858.1 vs. uniprot
Match: A0A6H5JN16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN16_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 3.770e-8
Identity = 31/74 (41.89%), Postives = 45/74 (60.81%), Query Frame = 3 
Query:    3 GELVGNGSLIIGPTAEVISNLRGLHEVYVEGILIGDCQCNKMQIRFSGCVTGNLQCGSLGMDPSVVLKGSANVN 224
            G+LV  G L+IG T  V  N+  L EV  +G ++G+ Q  ++++R S  V GN+ C SL MDP V + G  NV+
Sbjct:   99 GQLVSTGDLVIGATGIVRGNIEHLREVVSDGTVVGNIQAERVRLRRSAIVIGNITCYSLSMDPDVSISGKLNVH 172
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7182.14858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FMX5_ECTSI1.200e-4165.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FI98_ECTSI1.630e-841.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JN16_9PHAE3.770e-841.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7182contigH-elongata_contig7182:1696..5380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue3.3e-15
Seed eggNOG ortholog2880.D7FMX5
EggNOG free text desc.Polymer-forming cytoskeletal
EggNOG OGs2RXV0@2759,COG1664@1
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size2511
Cds size543
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931119.3668993-UTR-H-elongata_contig7182:1695..21561622931119.3668993-UTR-H-elongata_contig7182:1695..2156Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7182 1696..2156 -
1691679706.1654649-UTR-H-elongata_contig7182:1695..21561691679706.1654649-UTR-H-elongata_contig7182:1695..2156Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7182 1696..2156 -
1622931119.3829913-UTR-H-elongata_contig7182:2265..36471622931119.3829913-UTR-H-elongata_contig7182:2265..3647Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7182 2266..3647 -
1691679706.181846-UTR-H-elongata_contig7182:2265..36471691679706.181846-UTR-H-elongata_contig7182:2265..3647Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7182 2266..3647 -
1622931119.454294-UTR-H-elongata_contig7182:4815..48601622931119.454294-UTR-H-elongata_contig7182:4815..4860Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7182 4816..4860 -
1691679706.2281036-UTR-H-elongata_contig7182:4815..48601691679706.2281036-UTR-H-elongata_contig7182:4815..4860Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7182 4816..4860 -
1622931119.4722662-UTR-H-elongata_contig7182:5300..53801622931119.4722662-UTR-H-elongata_contig7182:5300..5380Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7182 5301..5380 -
1691679706.2360487-UTR-H-elongata_contig7182:5300..53801691679706.2360487-UTR-H-elongata_contig7182:5300..5380Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7182 5301..5380 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931119.3998346-CDS-H-elongata_contig7182:3647..40161622931119.3998346-CDS-H-elongata_contig7182:3647..4016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7182 3648..4016 -
1691679706.196674-CDS-H-elongata_contig7182:3647..40161691679706.196674-CDS-H-elongata_contig7182:3647..4016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7182 3648..4016 -
1622931119.4181187-CDS-H-elongata_contig7182:4422..45151622931119.4181187-CDS-H-elongata_contig7182:4422..4515Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7182 4423..4515 -
1691679706.2097764-CDS-H-elongata_contig7182:4422..45151691679706.2097764-CDS-H-elongata_contig7182:4422..4515Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7182 4423..4515 -
1622931119.435084-CDS-H-elongata_contig7182:4734..48151622931119.435084-CDS-H-elongata_contig7182:4734..4815Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7182 4735..4815 -
1691679706.2202942-CDS-H-elongata_contig7182:4734..48151691679706.2202942-CDS-H-elongata_contig7182:4734..4815Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7182 4735..4815 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7182.14858.1prot_H-elongata_contig7182.14858.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7182 3648..4815 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7182.14858.1

>prot_H-elongata_contig7182.14858.1 ID=prot_H-elongata_contig7182.14858.1|Name=mRNA_H-elongata_contig7182.14858.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=181bp
MQIRFSGCVTGNLQCGSLGMDPSVVLKGSANVNPREKPDKAKARATSGPA
RPRQQRVQSRGGISDEASSSSKALGSTSVISPESVPAREAAFDDLKAQKQ
KSKVRTGGETVENVKVHGRGSSSSSSEATASPSSMANGDEPSKAILSKDN
GPVEMPKIGDTVNIVRGRPPLSAGNKQGGS*
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mRNA from alignment at H-elongata_contig7182:1696..5380-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7182.14858.1 ID=mRNA_H-elongata_contig7182.14858.1|Name=mRNA_H-elongata_contig7182.14858.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3685bp|location=Sequence derived from alignment at H-elongata_contig7182:1696..5380- (Himanthalia elongata Himel1 dioecious)
AGGGGGAATTGGTGGGGAACGGAAGCCTCATAATCGGCCCCACCGCAGAG
GTGATAAGCAACCTCCGGGGTCTCCACGAGGTAGGAATACTCGTTAGTGA
TGTCCCAACTCCGCTTCTTGCATGAAACGCCATAGCTCCAGCGGCAGTTG
TTGAAATATTGTTGGCGTTAAGATGATGTCGGCAATCGGTCACGAAGGAG
TGTCATCATGGATCGTGCGCGTTCGCTTGGGGTACCGACACGATATGATA
CGGATGCCTAGGTGTAGATCAATATCGGGTACATGAGTCTTGCCGCGCGC
AAGCTGTCTTGGTATCCACTTCGGTGGGAATGAGGAGTTGGTTTGTTTTA
CGGAGATATTGTCGTAGACTTTGTTTGGGTGTCGGCATGTATATAGCTGA
ACTTGGCCTCTGTACTGTAGTGTTTTGTGTATGCTGTGTCATATGTCCTA
AAAAGCTAAAGCCTCTCTACCCAATCGACGACGCGACGTGTTCGCCCGGG
CCTACCGTCCACGGGGACAGGTTTACGTGGAAGGCATTTTGATCGGAGAC
TGCCAGTGCAACAAGATGCAGATCCGATTCTCCGGCTGCGTGACCGGCAA
CCTGCAGTGTGGATCACTAGGCATGGACCCCTCTGTTGTCCTCAAGGTAA
CAAGTGATAGATATTATGGAAACCATATGGCTTGAGTGCCCCTTAGATAG
TTTGCATCTTGGCTTTCTGAGCGCTGAAATTTGGCGTCGTGTTGCTTCGA
CAAGCCTTGATCGATCGGGGCACGAGTAGAGCTATGCGATTTTTTTCTTT
TTAATGGTATGTCTCTTGTATGACTGAGTCATGAGGTGTTTACTTTTGTA
TCATCGTCTTCACAGGGAAGCGCCAATGTTAACCCGAGAGAGAAGCCCGA
CAAGGCCAAGGCCAGGGCTACAAGTGGTCCGGCTCGCCCGAGACAGCAGC
GGGTGCAGGTGAGACCACAACCACAACCGCGGCCACTACCACGCCCACTC
GGATGGCGTCGTCGAGTCCTTCCCTTCTGGATCCTGCTCTGTATCGGCGG
AGCGGTTGATCGAGCTGTGGTTCGCTTCGGCGGGCGGTAACAGTTTCGAG
GGATGCGTGGAGCTAAATATTCTTGTCCTTTCATTTATTTAAATTATTTA
AAGTGCAAGGTGGCGACGCCAACTGAAGACGTTGTGGTTCATACCCATTA
CGTGAGGTGGGCGCTCGAGAAGTGCACGTCGCAGATACTACTACTACTAC
TACTAATCTCGCGTTTTGCAACTGGACCGCCTCGAGCTATCCGAATTGAG
CTAGCCAAGTTTGGCCATTGTTTTACCGTATCTCTTGTATATATTGTTAT
TGTTTGACCGTCAGTCCCGCGGTGGCATTTCTGATGAAGCGTCGTCGTCT
TCGAAAGCTTTGGGCTCGACCTCGGTCATAAGTCCCGAATCGGTACCGGC
GAGAGAGGCCGCATTTGATGACTTGAAGGCTCAGAAGCAGAAGTCAAAGG
TTCGCACCGGTGGGGAAACTGTCGAAAACGTAAAAGTCCATGGTCGCGGT
TCGTCGTCGTCGTCAAGCGAAGCCACGGCGTCTCCTAGTTCCATGGCAAA
CGGCGATGAGCCATCCAAGGCGATTCTATCGAAAGACAACGGACCCGTGG
AGATGCCGAAGATTGGAGACACAGTCAATATTGTACGAGGCAGGCCGCCA
TTGTCTGCTGGCAACAAGCAGGGTGGCTCTTAGGCAGCGCAGTGTGAAGG
GTGGATGATGGCGATAACAAACACCTATAGGCCCTGTGCGGTAGGGATGT
GTCGATGGTCGAAAGATCCATATGTATACCTTGAAGACGCGCGTTTTTGT
TTTGTTTTGTACACGTTTTGTTTGTTGTGGATTTGCATTGTGCTCGATGT
CAGACTTCAGCTGACAGCGCTCCTGCAATGCTCGTCTTGTGATTTTGGTT
ACTAGGTAAAAATGTGCTGGCTGCCAGTTGTGGCGATGTCTGTTTCCAGG
TTAAGCTTAACCAAGTACAGTACGTTAGGTCGATTTTGCGGTACTTTTGA
TTTTTTGTAATTGTGTTGACTTGCGTGCTTGAGTTTTTTTTTTTTTAGGC
TATCAGATTCCAGCTCTCGCCTCTCCTCGGTCCGTGGCGAGGGGAGCCCA
GAGCGTCGATGGTTTGTTGACGCTTTTGTTTGAAGAGTGGGAAAAAGAAG
ACGGATAAGGCCTAGGTACAATCTCCCGCAAGAGCTTTTCAGAACAAAGT
CGATCTGCATTGCTATATCGGTTTTACGCACTTCTTGGTCGGATCGGTTG
AAGAGTACACTGTGGTGCACGCGATAACTTGTGTCCAGATTGATGTTATT
CCTGAGAAGTGTTTCGTATCTTGGTGACTGTCCTTAGGTTTAACGCACTC
CGGGATATAGGATGAGGGCGAAGGTCCTCTCTCCCCCCTCCCATTGTTTT
GGATATAGGATGAGGGTGAAAGGAAGCACCTTTGTTGTCTTTCCAACTTG
GCATCATGTGCTCTCCTGTTTGCTTTGTTGCCGAGAAAATCGAGTGGAGA
CAGCGACCATTCCCGAATGTTCTGTCCCCGGAAGCGTGTCACAGTTACAT
GTACTGTACCATACCGTTCATTACGTTAATTGATTTTTGGAAGAGTAGAT
TATGCACGGCTGTTTTCTGTACCTGTTCACTGCAGTATTAATAGATGGGT
TGACTCCTTGGACGTCACCTTGGGGAACAAGAATCGACCATATTCTATGA
ATGAGTTTGTGATCTGCTGAAGCAATTATTTTCTTGGGGTGTTCGATAAG
CGTATTTGGGTTGTCTCGTCGAACAAGGTGGAGTCGGATTGGGTGGCATG
GCACGTAGGGAATGATGAAGCCAAATATGCCCTTCGTTTTTCTACGGTAA
ATATTATATTTTGTTGCTATATGTTTTCGCACACAGTTCAGTTGATATGG
TTGGGAGGGCGAAGGCTGACCCGCAGATCTGGTCTAGTTACCAAGCTCGT
CAGCCTTATAACATGCCATGTACTGTATATATGTTGTTCCAAGCATATCG
AAGTATCAGTAGTAGGGCTATTTGAACCTTGTAGCCGATACTGGCTGTAT
TAAGAAGAAAAAAAAGAAGAAAAAAATTGTCAGCGATGTTCAATCGAAGG
ACATGTCACAACAGTCCAGTGTTTGCGCGCGTGCAGCGACATACCCTTGA
AGCTGATCGAGATGTTACCGAATACGAACATTTAGAATAGCTTTTTGTGT
CGTCATACACGTCAAGCTATTTAATGTGTCAAATGTATTCCGGTCAGTCT
TTTTTTTTTAACATCAGGAATAAAGGTAAGGGCACTTGTGGGAACCCCCT
GCCCCTTCGCTGTATTGGGCCATAGGAGCAAACGTTACTATCTAGTGCCT
GGTTTATAAGAAGAGATGGTATCTGATAGCTCGCCATAACGTTAAAGTAC
GGCATTGCGTGCTTGATCGCTAGAGCGAGAGGTACAAAGGTCACAACTTG
TGCATATGCTGCCGGTCGACAAGCGGATGTCACATGCTATCCCAAGTACC
CGCAAAATTGGCAGAGTGGACTGACCTGACCGCACACAATCCTGAAACTC
GAAATGGATAACCCTCGCTTAATATTTTAGCATATTTACCACAATCATCA
AGGGCGTTCTGGGATGTAGCCATTGAATGTGGCAC
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Coding sequence (CDS) from alignment at H-elongata_contig7182:1696..5380-

>mRNA_H-elongata_contig7182.14858.1 ID=mRNA_H-elongata_contig7182.14858.1|Name=mRNA_H-elongata_contig7182.14858.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1086bp|location=Sequence derived from alignment at H-elongata_contig7182:1696..5380- (Himanthalia elongata Himel1 dioecious)
ATGCAGATCCGATTCTCCGGCTGCGTGACCGGCAACCTGCAGTGTGGATC
ACTAGGCATGGACCCCTCTGTTGTCCTCAAGATGCAGATCCGATTCTCCG
GCTGCGTGACCGGCAACCTGCAGTGTGGATCACTAGGCATGGACCCCTCT
GTTGTCCTCAAGGGAAGCGCCAATGTTAACCCGAGAGAGAAGCCCGACAA
GGCCAAGGCCAGGGCTACAAGTGGTCCGGCTCGCCCGAGACAGCAGCGGG
TGCAGGGAAGCGCCAATGTTAACCCGAGAGAGAAGCCCGACAAGGCCAAG
GCCAGGGCTACAAGTGGTCCGGCTCGCCCGAGACAGCAGCGGGTGCAGTC
CCGCGGTGGCATTTCTGATGAAGCGTCGTCGTCTTCGAAAGCTTTGGGCT
CGACCTCGGTCATAAGTCCCGAATCGGTACCGGCGAGAGAGGCCGCATTT
GATGACTTGAAGGCTCAGAAGCAGAAGTCAAAGGTTCGCACCGGTGGGGA
AACTGTCGAAAACGTAAAAGTCCATGGTCGCGGTTCGTCGTCGTCGTCAA
GCGAAGCCACGGCGTCTCCTAGTTCCATGGCAAACGGCGATGAGCCATCC
AAGGCGATTCTATCGAAAGACAACGGACCCGTGGAGATGCCGAAGATTGG
AGACACAGTCAATATTGTACGAGGCAGGCCGCCATTGTCTGCTGGCAACA
AGCAGGGTGGCTCTTAGTCCCGCGGTGGCATTTCTGATGAAGCGTCGTCG
TCTTCGAAAGCTTTGGGCTCGACCTCGGTCATAAGTCCCGAATCGGTACC
GGCGAGAGAGGCCGCATTTGATGACTTGAAGGCTCAGAAGCAGAAGTCAA
AGGTTCGCACCGGTGGGGAAACTGTCGAAAACGTAAAAGTCCATGGTCGC
GGTTCGTCGTCGTCGTCAAGCGAAGCCACGGCGTCTCCTAGTTCCATGGC
AAACGGCGATGAGCCATCCAAGGCGATTCTATCGAAAGACAACGGACCCG
TGGAGATGCCGAAGATTGGAGACACAGTCAATATTGTACGAGGCAGGCCG
CCATTGTCTGCTGGCAACAAGCAGGGTGGCTCTTAG
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