mRNA_H-elongata_contig71804.14854.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig71804.14854.1 vs. uniprot
Match: D7FZY6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZY6_ECTSI) HSP 1 Score: 284 bits (726), Expect = 6.120e-92 Identity = 133/207 (64.25%), Postives = 155/207 (74.88%), Query Frame = 3
Query: 3 RPGETSLWHRHSENTFYVCVENAVSALNRPSDKAPYVHHATPGDMWWAMSKSAPFVHQVCLLPENTHPSQFFGMEILHPPPVVSDMPLLHRCYKLLKEESRPGLIRVYKFKLEPGESTGPHSWDFCGIVLCLSNGGGRIDAIGGNSHAGGNCSPFGDGENVMSRVGGWKWVEGPVEIDVRNAGERPYEAVVVEWLGENGEVGGPSKL 623
RPGETSLWHRHSENT YVCV + +ALNRP+DK P+VHHA+PGD+WWAMSKSAP+VHQVCLLPENTH S FF MEIL PPP S L HRCY L E+SRPGL RVY F+L+PGESTGPH+ F G+VLCLS+GGG ++A GG F GE +S+VGGWKW++GPV + RNAG Y+A VVEWLG V G S+L
Sbjct: 40 RPGETSLWHRHSENTLYVCVGHGAAALNRPTDKEPFVHHASPGDLWWAMSKSAPYVHQVCLLPENTHNSHFFAMEILRPPPTCSSRALDHRCYSLRGEDSRPGLARVYDFRLKPGESTGPHTLGFSGVVLCLSDGGGSLEADGG---------VFAGGE--LSKVGGWKWIDGPVSANARNAGGSVYQAFVVEWLGGGHSVEGVSRL 235
BLAST of mRNA_H-elongata_contig71804.14854.1 vs. uniprot
Match: A0A836C8W9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8W9_9STRA) HSP 1 Score: 155 bits (393), Expect = 4.100e-42 Identity = 82/194 (42.27%), Postives = 114/194 (58.76%), Query Frame = 3
Query: 6 PGETSLWHRHSENTFYVCVENAVSALNRPSDKAPYVHHATPGDMWWAMSKSAPFVHQVCLLPENTHPSQFFGMEILHPPPVVSDMPLLHRCYKLLKEESRPGLIRVYKFKLEPGESTGPHSWDFCGIVLCLSNGGGRIDAIGGNSHAGGNCSPFGDGENVMSRVGGWKWVEGPVEIDVRNAGERPYEAVVVEWL 587
PGE+ +WHRHS+++FYV + + A+NRP+DK + GD WW++ K+ VHQVCL P++FFG+E+L PPV S+ PL Y LL ++ R+Y L+PG+STG H+W+F VLCLS+G + G +S PF + G +KWVEGPV V+N G Y AVVVEW+
Sbjct: 41 PGESCMWHRHSQDSFYVALASC-EAINRPTDKPEGELNLKAGDKWWSLYKAKDMVHQVCLPGTCAAPAKFFGVEVLKSPPVYSESPLGGNAYTLL-DQFTIDRARIYDMTLQPGQSTGMHTWNFFATVLCLSDG--ELSTEGADS-------PF--AFLGLRTYGQYKWVEGPVTFSVKNEGSAAYTAVVVEWV 221
BLAST of mRNA_H-elongata_contig71804.14854.1 vs. uniprot
Match: UPI00166F5ED3 (hypothetical protein n=1 Tax=Marinobacterium nitratireducens TaxID=518897 RepID=UPI00166F5ED3) HSP 1 Score: 93.2 bits (230), Expect = 1.940e-18 Identity = 62/194 (31.96%), Postives = 90/194 (46.39%), Query Frame = 3
Query: 6 PGETSLWHRHSENTFYVCVENAVSALNRPSDKAPYVHHATPGDMWWAMSKSAPFVHQVCLLPENTHPSQFFGMEILHPPPVVSDMPLLHRCYKLLKEESRPGLIRVYKFKLEPGESTGPHSWDFCGIVLCLSNGGGRI-DAIGGNSHAGGNCSPFGDGENVMSRVGGWKWVEGPVEIDVRNAGERPYEAVVVEW 584
PGE+SL+HRH E+T YV V +A VH G K P +H+V + T P Q G E+ P +V+ PL + LL+ S +R+Y KLEPGE+TGP ++ F G+ + +S+ DA G F G ++ W +GP+ + N GE + AV+ EW
Sbjct: 51 PGESSLYHRHDEDTLYVTVRDATIHDQTYQSDECQVHRIPAGLSLCRPHKGEPLIHRV--RNDGTGPMQMIGAEVKKLPEIVAAEPLQAPFHTLLENLSGARRLRLYMIKLEPGETTGPVTYGFSGLTVSISDANVEFADATGVR-----RVISFAPGAHI--------WHDGPLTQTLTNRGETAFVAVLGEW 229
BLAST of mRNA_H-elongata_contig71804.14854.1 vs. uniprot
Match: UPI001EDF32C1 (hypothetical protein n=1 Tax=Pseudomonas sp. MMS21 TM103 TaxID=2886506 RepID=UPI001EDF32C1) HSP 1 Score: 90.5 bits (223), Expect = 2.370e-17 Identity = 59/193 (30.57%), Postives = 85/193 (44.04%), Query Frame = 3
Query: 9 GETSLWHRHSENTFYVCVENAVSALNRPSDKAPYVHHATPGDMWWAMSK-SAPFVHQVCLLPENTHPSQFFGMEILHPPPVVSDMPLLHRCYKLLKEESRPGLIRVYKFKLEPGESTGPHSWDFCGIVLCLSNGGGRIDAIGGNSHAGGNCSPFGDGENVMSRVGGWKWVEGPVEIDVRNAGERPYEAVVVEW 584
GE SL+HRHS++TFYV V +A ++ D H P P +HQV E P + G E+ P V ++ PL ++L +R+Y+ KL PG STG + F + + LS +ID G S V G W +GP + + N G+ P+EAV+ EW
Sbjct: 65 GEKSLYHRHSQDTFYVAV-HATKVYDQTLDAEQGAEHDLPAGFSMCRGHLGEPLIHQVSNTGEG--PMRMIGAEVRKRPAVTTEAPLQALHHELAPNMFDVDRVRMYRIKLVPGMSTGEIRYGFSALTVVLSQSSLKIDEATGGSQV------------VSYEPGDHVWRDGPTTLTLTNVGDTPFEAVMGEW 242
BLAST of mRNA_H-elongata_contig71804.14854.1 vs. uniprot
Match: UPI00037123EA (hypothetical protein n=1 Tax=Marinobacterium rhizophilum TaxID=420402 RepID=UPI00037123EA) HSP 1 Score: 78.2 bits (191), Expect = 4.470e-13 Identity = 60/201 (29.85%), Postives = 89/201 (44.28%), Query Frame = 3
Query: 3 RPGETSLWHRHSENTFYVCV-ENAVSALNRPSDKAPYVHHATPGDMWWAMSKSA-PFVHQVCLLPENTHPSQFFGMEILHPPPVVSDMPLLHRCYKLLKEESRPGLIRVYKFKLEPGESTGPHSWDFCGIVLCLSN-----GGGRIDAIGGNSHAGGNCSPFGDGENVMSRVGGWKWVEGPVEIDVRNAGERPYEAVVVEW 584
+PGE SL+HRHS +T YV V + V +D V H P + P +H+V E Q G E PPVV++ PL + + + + IR Y+ L+PGESTG + F G+++ S+ G GR + FG G + W +GP+ + N G+ P+ AV+ EW
Sbjct: 49 KPGEHSLYHRHSVDTLYVAVYDTRVFDQTYGADHG--VTHELPAGLCGCRPHGREPLIHRV--RNEGAGLMQMIGAEHKRSPPVVAERPLEAPLHTPVADPFKGESIRCYQIDLQPGESTGLVEYPFSGLLVSFSDATLAVGDGRATQV----------VAFGPGTFI--------WHDGPIARQLHNVGKTPFRAVLGEW 227
BLAST of mRNA_H-elongata_contig71804.14854.1 vs. uniprot
Match: A0A1Y1HK06_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HK06_KLENI) HSP 1 Score: 75.9 bits (185), Expect = 3.160e-12 Identity = 60/201 (29.85%), Postives = 91/201 (45.27%), Query Frame = 3
Query: 3 RPGETSLWHRHSENTFYVCVENAVSALNRPSDKAPYVHHATPGDMWWAMSKSAPFVHQVCLLPENTHPSQFFGMEILH--------PPPVVSDMPLLHRCYKLLKEESRPGLIRVYKFKLEPGESTGPHSW-DFCGIVLCLSNGGGRIDAIGGNSHAGGNCSPFGDGENVMSRVGGWKWVEGPVEIDVRNAGERPYEAVVV 578
+P +T+L+HRH +TFY + A+ D G + M +S VH+V EN + G+E+L P P ++ LL Y + + P +I V+K L PG++TG HS+ CG+ L L+ R+ G+S SPF G G KW EG V+ ++ N GE A++V
Sbjct: 40 KPSDTTLYHRHYNDTFYALIAGGHGAMQEAGDDFKDTVLEPQGTLA-LMCRSKELVHRVHFKAENKNAFHILGVELLPSGDSSDETPAPDLNQSALLRCGYTHVTKNVWPQII-VHKLTLPPGQTTGLHSYGSHCGVALFLTGAYLRVLEAEGSSP-----SPFSGG---FVAAGSVKWHEGGVKHEIVNIGETELVAMLV 230
BLAST of mRNA_H-elongata_contig71804.14854.1 vs. uniprot
Match: A0A6N7FJN0_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6N7FJN0_9ACTN) HSP 1 Score: 73.2 bits (178), Expect = 2.280e-11 Identity = 57/193 (29.53%), Postives = 79/193 (40.93%), Query Frame = 3
Query: 6 PGETSLWHRHSENTFYVCVENAVSALNRPSDKAPYVHHATPGDMWWAMSKSAPFVHQVCLLPENTHPSQFFGMEILHPPPVVSDMPLLHRCYKLLKEESRPGLIRVYKFKLEPGESTGPHSWDFCGIVLCLSNGGGRIDAIGGNSHAGGNCSPFGDGENVMSRVGGWKWVEGPVEIDVRNAGERPYEAVVVEW 584
PG+T+L+HRH+ +TFYV V A + A G P VHQV L T + G EI P V S+ L + L E +RVY+ L PG STG + F + + L+ + HA G ++ G W+ GP ++ + N GE P A V EW
Sbjct: 45 PGDTTLYHRHTRDTFYVAVNEATVRDRTWGEDEAREGTALAGTAMCRPHLKRPLVHQVHNL--GTAEMRLIGAEIKASPAVTSEAALDAPGHALTLEREP---LRVYELALGPGASTGDIEYRFSSLTVMLTIATLLV------RHADGAA------RTMVHAPGDVVWLPGPAQLSITNVGEEPCRAFVGEW 220
BLAST of mRNA_H-elongata_contig71804.14854.1 vs. uniprot
Match: A0A7S4KS54_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4KS54_9EUKA) HSP 1 Score: 55.1 bits (131), Expect = 4.240e-5 Identity = 39/139 (28.06%), Postives = 64/139 (46.04%), Query Frame = 3
Query: 6 PGETSLWHRHSENTFYVCVENAVSALNRPSDKAPYVHHATPGDMW-----WAMSKSAPFVHQVCLLPENTHPSQFFGMEIL-----HPPPVVSDMPLLHRCYKLLKEESRPGLIRVYKFKLEPGESTGPHSWDFCGIVL 392
PG+TSL+HRHSENT Y+ +++A + + H A G+M+ + P +H VC L + F G+E+ PPV+ + R Y ++ P V++ K+E G+ H G+V+
Sbjct: 56 PGQTSLFHRHSENTLYIVLDDAKACDRIAGEHEINFHDAIRGEMFARTHVHPSGEHTPLIHAVCNL--GGEATNFLGIEVKTQQASQTPPVLEES----RGYMRREDLVSPS-FSVFELKVEGGKELPEHPLPNRGLVV 187 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71804.14854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig71804.14854.1 >prot_H-elongata_contig71804.14854.1 ID=prot_H-elongata_contig71804.14854.1|Name=mRNA_H-elongata_contig71804.14854.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=164bp MWWAMSKSAPFVHQVCLLPENTHPSQFFGMEILHPPPVVSDMPLLHRCYKback to top mRNA from alignment at H-elongata_contig71804:419..1954+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig71804.14854.1 ID=mRNA_H-elongata_contig71804.14854.1|Name=mRNA_H-elongata_contig71804.14854.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1536bp|location=Sequence derived from alignment at H-elongata_contig71804:419..1954+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig71804:419..1954+ >mRNA_H-elongata_contig71804.14854.1 ID=mRNA_H-elongata_contig71804.14854.1|Name=mRNA_H-elongata_contig71804.14854.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=984bp|location=Sequence derived from alignment at H-elongata_contig71804:419..1954+ (Himanthalia elongata Himel1 dioecious)back to top |