mRNA_H-elongata_contig71790.14850.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig71790.14850.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE) HSP 1 Score: 127 bits (318), Expect = 5.740e-31 Identity = 74/180 (41.11%), Postives = 107/180 (59.44%), Query Frame = 1
Query: 40 FEQGKADPYVFRKVVDGEAKVVVVVHVDNILTHAKGKATMDRFAAELGQKFKLKDMGDAMYCMGCHITRNRKARELMID*HLYVDSMIETFDVKKGNKIPATLGVPILSKADKPRNPEEKEKMRKFPYREAVGALMRTTTMTRSDIASAVRAVARFCENPGPAHKKAVMKIMQYLLHTKD 579
FEQ KADP VFRK+VD +++V++VD+IL A + A L +KF K++G+ + GC I R+ +A L I Y+DSM+E FDVK ++IPAT G + K E E+ ++P REA+G++M +T +R D++ AVRAVAR P H A+ KI+ YL T+D
Sbjct: 195 FEQCKADPCVFRKMVDEVVVMIIVIYVDDILV-AGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 366
BLAST of mRNA_H-elongata_contig71790.14850.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE) HSP 1 Score: 127 bits (318), Expect = 2.200e-30 Identity = 75/180 (41.67%), Postives = 106/180 (58.89%), Query Frame = 1
Query: 40 FEQGKADPYVFRKVVDGEAKVVVVVHVDNILTHAKGKATMDRFAAELGQKFKLKDMGDAMYCMGCHITRNRKARELMID*HLYVDSMIETFDVKKGNKIPATLGVPILSKADKPRNPEEKEKMRKFPYREAVGALMRTTTMTRSDIASAVRAVARFCENPGPAHKKAVMKIMQYLLHTKD 579
FEQ KADP VFRK+VD +++V++VD+IL A + A L +KF K++G+ + GC I R+ A L I Y+DSM+E FDVK ++IPAT G + K E +K ++P REAVG++M +T +R D++ AVRAVAR P H A+ KI+ YL T+D
Sbjct: 499 FEQCKADPCVFRKMVDEVVVMIIVIYVDDILV-AGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDDKGGEWPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 670
BLAST of mRNA_H-elongata_contig71790.14850.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 127 bits (318), Expect = 2.350e-30 Identity = 74/180 (41.11%), Postives = 107/180 (59.44%), Query Frame = 1
Query: 40 FEQGKADPYVFRKVVDGEAKVVVVVHVDNILTHAKGKATMDRFAAELGQKFKLKDMGDAMYCMGCHITRNRKARELMID*HLYVDSMIETFDVKKGNKIPATLGVPILSKADKPRNPEEKEKMRKFPYREAVGALMRTTTMTRSDIASAVRAVARFCENPGPAHKKAVMKIMQYLLHTKD 579
FEQ KADP VFRK+VD +++V++VD+IL A + A L +KF K++G+ + GC I R+ +A L I Y+DSM+E FDVK ++IPAT G + K E E+ ++P REA+G++M +T +R D++ AVRAVAR P H A+ KI+ YL T+D
Sbjct: 908 FEQCKADPCVFRKMVDEVVVMIIVIYVDDILV-AGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 1079
BLAST of mRNA_H-elongata_contig71790.14850.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 127 bits (318), Expect = 2.410e-30 Identity = 74/180 (41.11%), Postives = 107/180 (59.44%), Query Frame = 1
Query: 40 FEQGKADPYVFRKVVDGEAKVVVVVHVDNILTHAKGKATMDRFAAELGQKFKLKDMGDAMYCMGCHITRNRKARELMID*HLYVDSMIETFDVKKGNKIPATLGVPILSKADKPRNPEEKEKMRKFPYREAVGALMRTTTMTRSDIASAVRAVARFCENPGPAHKKAVMKIMQYLLHTKD 579
FEQ KADP VFRK+VD +++V++VD+IL A + A L +KF K++G+ + GC I R+ +A L I Y+DSM+E FDVK ++IPAT G + K E E+ ++P REA+G++M +T +R D++ AVRAVAR P H A+ KI+ YL T+D
Sbjct: 1287 FEQCKADPCVFRKMVDEVVVMIIVIYVDDILV-AGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 1458
BLAST of mRNA_H-elongata_contig71790.14850.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 127 bits (318), Expect = 2.420e-30 Identity = 74/180 (41.11%), Postives = 107/180 (59.44%), Query Frame = 1
Query: 40 FEQGKADPYVFRKVVDGEAKVVVVVHVDNILTHAKGKATMDRFAAELGQKFKLKDMGDAMYCMGCHITRNRKARELMID*HLYVDSMIETFDVKKGNKIPATLGVPILSKADKPRNPEEKEKMRKFPYREAVGALMRTTTMTRSDIASAVRAVARFCENPGPAHKKAVMKIMQYLLHTKD 579
FEQ KADP VFRK+VD +++V++VD+IL A + A L +KF K++G+ + GC I R+ +A L I Y+DSM+E FDVK ++IPAT G + K E E+ ++P REA+G++M +T +R D++ AVRAVAR P H A+ KI+ YL T+D
Sbjct: 1307 FEQCKADPCVFRKMVDQVVVMIIVIYVDDILV-AGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 1478
BLAST of mRNA_H-elongata_contig71790.14850.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 127 bits (318), Expect = 2.430e-30 Identity = 74/180 (41.11%), Postives = 107/180 (59.44%), Query Frame = 1
Query: 40 FEQGKADPYVFRKVVDGEAKVVVVVHVDNILTHAKGKATMDRFAAELGQKFKLKDMGDAMYCMGCHITRNRKARELMID*HLYVDSMIETFDVKKGNKIPATLGVPILSKADKPRNPEEKEKMRKFPYREAVGALMRTTTMTRSDIASAVRAVARFCENPGPAHKKAVMKIMQYLLHTKD 579
FEQ KADP VFRK+VD +++V++VD+IL A + A L +KF K++G+ + GC I R+ +A L I Y+DSM+E FDVK ++IPAT G + K E E+ ++P REA+G++M +T +R D++ AVRAVAR P H A+ KI+ YL T+D
Sbjct: 1450 FEQCKADPCVFRKMVDEVVVMIIVIYVDDILV-AGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 1621
BLAST of mRNA_H-elongata_contig71790.14850.1 vs. uniprot
Match: A0A6H5JVD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD4_9PHAE) HSP 1 Score: 124 bits (310), Expect = 5.010e-30 Identity = 72/180 (40.00%), Postives = 107/180 (59.44%), Query Frame = 1
Query: 40 FEQGKADPYVFRKVVDGEAKVVVVVHVDNILTHAKGKATMDRFAAELGQKFKLKDMGDAMYCMGCHITRNRKARELMID*HLYVDSMIETFDVKKGNKIPATLGVPILSKADKPRNPEEKEKMRKFPYREAVGALMRTTTMTRSDIASAVRAVARFCENPGPAHKKAVMKIMQYLLHTKD 579
FEQ KADP VFRK+VD +++V++VD+IL A + A L +KF K++G+ + GC I R+ +A L I Y+DSM+E FDV+ ++IPAT G + + E E+ ++P REA+G++M +T +R D++ AVRAVAR P H A+ KI+ YL T+D
Sbjct: 131 FEQCKADPCVFRKMVDEVVVMIIVIYVDDILV-AGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVQSTSRIPATPGADLGPQ-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 302
BLAST of mRNA_H-elongata_contig71790.14850.1 vs. uniprot
Match: A0A6H5K164_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K164_9PHAE) HSP 1 Score: 124 bits (310), Expect = 2.420e-29 Identity = 72/180 (40.00%), Postives = 106/180 (58.89%), Query Frame = 1
Query: 40 FEQGKADPYVFRKVVDGEAKVVVVVHVDNILTHAKGKATMDRFAAELGQKFKLKDMGDAMYCMGCHITRNRKARELMID*HLYVDSMIETFDVKKGNKIPATLGVPILSKADKPRNPEEKEKMRKFPYREAVGALMRTTTMTRSDIASAVRAVARFCENPGPAHKKAVMKIMQYLLHTKD 579
FEQ KADP VFRK+VD +++V++VD+IL A + A L +KF K++G+ + GC I R+ A L I Y+DSM+E FDVK ++IPAT G + K E E+ ++P REA+G++M +T +R D++ AVRAVAR P H A+ KI+ ++ T+D
Sbjct: 543 FEQCKADPCVFRKMVDEVVVMIIVIYVDDILV-AGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGFMKGTRD 714
BLAST of mRNA_H-elongata_contig71790.14850.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE) HSP 1 Score: 124 bits (310), Expect = 2.780e-29 Identity = 72/180 (40.00%), Postives = 106/180 (58.89%), Query Frame = 1
Query: 40 FEQGKADPYVFRKVVDGEAKVVVVVHVDNILTHAKGKATMDRFAAELGQKFKLKDMGDAMYCMGCHITRNRKARELMID*HLYVDSMIETFDVKKGNKIPATLGVPILSKADKPRNPEEKEKMRKFPYREAVGALMRTTTMTRSDIASAVRAVARFCENPGPAHKKAVMKIMQYLLHTKD 579
FEQ KADP VFRK+VD +++V++VD+IL A + A L +KF K++G+ + GC I R+ +A L I Y+DSM+E FDVK ++IPAT G + K E E+ ++P R+A+G++M +T +R D++ A RAVAR P H A+ KI+ YL T+D
Sbjct: 1017 FEQCKADPCVFRKMVDEVVVMIIVIYVDDILV-AGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVRKAIGSMMWVSTFSRPDVSFAARAVARHAHAPAKRHWDAIQKILGYLKGTRD 1188
BLAST of mRNA_H-elongata_contig71790.14850.1 vs. uniprot
Match: A0A6H5JYF4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF4_9PHAE) HSP 1 Score: 120 bits (301), Expect = 5.640e-29 Identity = 71/180 (39.44%), Postives = 104/180 (57.78%), Query Frame = 1
Query: 40 FEQGKADPYVFRKVVDGEAKVVVVVHVDNILTHAKGKATMDRFAAELGQKFKLKDMGDAMYCMGCHITRNRKARELMID*HLYVDSMIETFDVKKGNKIPATLGVPILSKADKPRNPEEKEKMRKFPYREAVGALMRTTTMTRSDIASAVRAVARFCENPGPAHKKAVMKIMQYLLHTKD 579
FEQ KADP VFRK+VD +++V++VD+IL A + A L +KF + G+ + GC I R+ +A L I Y+DSM++ FDV+ +IPAT G + K E E+ ++P REA+G++M +T +R D++ AVRAVAR P H A+ KI+ YL T+D
Sbjct: 65 FEQCKADPCVFRKMVDEVVVMIIVIYVDDILV-AGSDEDCEELLASLNKKFPTTNPGECQWLDGCAIVRDVEAGTLGISQTAYIDSMVKRFDVQSTYRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARLAHAPAKRHWDAIQKILGYLTETRD 236 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71790.14850.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig71790.14850.1 >prot_H-elongata_contig71790.14850.1 ID=prot_H-elongata_contig71790.14850.1|Name=mRNA_H-elongata_contig71790.14850.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp MIETFDVKKGNKIPATLGVPILSKADKPRNPEEKEKMRKFPYREAVGALMback to top mRNA from alignment at H-elongata_contig71790:2533..3114+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig71790.14850.1 ID=mRNA_H-elongata_contig71790.14850.1|Name=mRNA_H-elongata_contig71790.14850.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=582bp|location=Sequence derived from alignment at H-elongata_contig71790:2533..3114+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig71790:2533..3114+ >mRNA_H-elongata_contig71790.14850.1 ID=mRNA_H-elongata_contig71790.14850.1|Name=mRNA_H-elongata_contig71790.14850.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig71790:2533..3114+ (Himanthalia elongata Himel1 dioecious)back to top |