mRNA_H-elongata_contig71744.14848.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71744.14848.1
Unique NamemRNA_H-elongata_contig71744.14848.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71744.14848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71744contigH-elongata_contig71744:2839..3102 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931118.6122055-CDS-H-elongata_contig71744:2838..31021622931118.6122055-CDS-H-elongata_contig71744:2838..3102Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71744 2839..3102 -
1691679705.8973842-CDS-H-elongata_contig71744:2838..31021691679705.8973842-CDS-H-elongata_contig71744:2838..3102Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71744 2839..3102 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71744.14848.1prot_H-elongata_contig71744.14848.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71744 2839..3102 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71744.14848.1

>prot_H-elongata_contig71744.14848.1 ID=prot_H-elongata_contig71744.14848.1|Name=mRNA_H-elongata_contig71744.14848.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
CGFCGLVGGCETRVRVQRKVEKIVFTCSHSPKSDVNSNEVDIGVKRARVS
PEITPCTKFPLECLLCSSRKQRVFIWKYCMPAHIRQVH
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mRNA from alignment at H-elongata_contig71744:2839..3102-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71744.14848.1 ID=mRNA_H-elongata_contig71744.14848.1|Name=mRNA_H-elongata_contig71744.14848.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=264bp|location=Sequence derived from alignment at H-elongata_contig71744:2839..3102- (Himanthalia elongata Himel1 dioecious)
TGCGGCTTCTGCGGGTTGGTTGGGGGTTGTGAAACCCGCGTACGCGTACA
GAGAAAGGTTGAAAAGATCGTCTTTACGTGCTCACACTCACCAAAGTCCG
ACGTCAATTCCAACGAAGTTGATATCGGCGTTAAGAGGGCGAGGGTGTCA
CCCGAGATAACTCCCTGCACGAAGTTTCCGCTGGAGTGTTTGCTGTGCTC
GTCGCGCAAACAGAGAGTCTTCATTTGGAAGTACTGCATGCCAGCCCATA
TACGTCAGGTCCAT
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Coding sequence (CDS) from alignment at H-elongata_contig71744:2839..3102-

>mRNA_H-elongata_contig71744.14848.1 ID=mRNA_H-elongata_contig71744.14848.1|Name=mRNA_H-elongata_contig71744.14848.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig71744:2839..3102- (Himanthalia elongata Himel1 dioecious)
TGCGGCTTCTGCGGGTTGGTTGGGGGTTGTGAAACCCGCGTACGCGTACA
GAGAAAGGTTGAAAAGATCGTCTTTACGTGCTCACACTCACCAAAGTCCG
ACGTCAATTCCAACGAAGTTGATATCGGCGTTAAGAGGGCGAGGGTGTCA
CCCGAGATAACTCCCTGCACGAAGTTTCCGCTGGAGTGTTTGCTGTGCTC
GTCGCGCAAACAGAGAGTCTTCATTTGGAAGTACTGCATGCCAGCCCATA
TACGTCAGGTCCATTGCGGCTTCTGCGGGTTGGTTGGGGGTTGTGAAACC
CGCGTACGCGTACAGAGAAAGGTTGAAAAGATCGTCTTTACGTGCTCACA
CTCACCAAAGTCCGACGTCAATTCCAACGAAGTTGATATCGGCGTTAAGA
GGGCGAGGGTGTCACCCGAGATAACTCCCTGCACGAAGTTTCCGCTGGAG
TGTTTGCTGTGCTCGTCGCGCAAACAGAGAGTCTTCATTTGGAAGTACTG
CATGCCAGCCCATATACGTCAGGTCCAT
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