mRNA_H-elongata_contig71716.14847.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig71716.14847.1
Unique Name	mRNA_H-elongata_contig71716.14847.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig71716.14847.1 vs. uniprot
Match: A0A6H5K684_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K684_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 8.330e-23
Identity = 51/128 (39.84%), Postives = 83/128 (64.84%), Query Frame = 1

Query:    1 LSVGGAVIMAGGAISWFSRVQKVTVAASSESEYVALAEMVNGLRFLRQVNEFMTPPIDV-AIKVHEDNEGAIKMARNRFSSR*TRQHVDIQYHIVRDAIEGGLVHVEYVRSGEQHADILTKSVDVKTF 381
            L  GG V+  GG ++WFSR QK    +++E+EYVA+A+++  + FLRQV  FM P   +  I V EDN+GAI++A N  ++    +H+D+++H +R+ +E   + + +V S  QHAD LTK+   ++F
Sbjct:  174 LXSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNS-NSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKATSKESF 300

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BLAST of mRNA_H-elongata_contig71716.14847.1 vs. uniprot
Match: A0A6H5K6X8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6X8_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.150e-22
Identity = 53/120 (44.17%), Postives = 80/120 (66.67%), Query Frame = 1

Query:   10 GGAVIMAGGAISWFSRVQKVTVAASSESEYVALAEMVNGLRFLRQVNEFMTPPIDV-AIKVHEDNEGAIKMARNRFSSR*TRQHVDIQYHIVRDAIEGGLVHVEYVRSGEQHADILTKSV 366
            GG V   GGA+SWFSR QK    +++E+EYVAL ++V  + FLRQ+  FM P + +  I V EDN+GAI++A+N  S+    +H+D+++H +R+ +E   + V +V S  Q AD LTKS+
Sbjct:  177 GGIVTCGGGAVSWFSRTQKYVTLSTTETEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNS-NSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSL 295

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BLAST of mRNA_H-elongata_contig71716.14847.1 vs. uniprot
Match: A0A6H5L3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H4_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 2.320e-22
Identity = 50/125 (40.00%), Postives = 82/125 (65.60%), Query Frame = 1

Query:   10 GGAVIMAGGAISWFSRVQKVTVAASSESEYVALAEMVNGLRFLRQVNEFMTPPIDV-AIKVHEDNEGAIKMARNRFSSR*TRQHVDIQYHIVRDAIEGGLVHVEYVRSGEQHADILTKSVDVKTF 381
            GG V+  GG ++WFSR QK    +++E+EYVA A+++  + FLRQV  FM P   +  I V EDN+GAI++A N  ++    +H+D+++H +R+ +E   + + +V S  QHAD LTK++  ++F
Sbjct:  279 GGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAFADVLKEVLFLRQVWRFMLPDTGMPCIPVFEDNQGAIQIAHNPITNS-NSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESF 402

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BLAST of mRNA_H-elongata_contig71716.14847.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 3.060e-22
Identity = 50/125 (40.00%), Postives = 83/125 (66.40%), Query Frame = 1

Query:   10 GGAVIMAGGAISWFSRVQKVTVAASSESEYVALAEMVNGLRFLRQVNEFMTPPIDV-AIKVHEDNEGAIKMARNRFSSR*TRQHVDIQYHIVRDAIEGGLVHVEYVRSGEQHADILTKSVDVKTF 381
            GG V+  GG ++WFSR QK    +++E+EYVA+A+++  + FLRQV  FM P   +  I V EDN+GAI++A N  ++    +H+D+++H +R+ +E   + + +V S  QHAD LTK++  ++F
Sbjct: 1338 GGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNS-NSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESF 1461

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BLAST of mRNA_H-elongata_contig71716.14847.1 vs. uniprot
Match: A0A6H5K8K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K2_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 3.890e-22
Identity = 50/125 (40.00%), Postives = 82/125 (65.60%), Query Frame = 1

Query:   10 GGAVIMAGGAISWFSRVQKVTVAASSESEYVALAEMVNGLRFLRQVNEFMTPPIDV-AIKVHEDNEGAIKMARNRFSSR*TRQHVDIQYHIVRDAIEGGLVHVEYVRSGEQHADILTKSVDVKTF 381
            GG V+  GG ++WFSR QK    +++E+EYVA+A+++  + FLRQV  FM P   +  I V EDN+GAI++A N  ++    +H+D ++H++R  +E   + + +V S  QHAD LTK++  ++F
Sbjct:  159 GGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQVAHNPITNS-NSKHIDERHHLIRKLVERKEISITHVTSEFQHADFLTKAISKESF 282

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BLAST of mRNA_H-elongata_contig71716.14847.1 vs. uniprot
Match: A0A6H5KQN5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQN5_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 5.480e-22
Identity = 51/125 (40.80%), Postives = 82/125 (65.60%), Query Frame = 1

Query:   10 GGAVIMAGGAISWFSRVQKVTVAASSESEYVALAEMVNGLRFLRQVNEFMTPPIDV-AIKVHEDNEGAIKMARNRFSSR*TRQHVDIQYHIVRDAIEGGLVHVEYVRSGEQHADILTKSVDVKTF 381
            GG V+  GG ++WFSR QK     ++ESEYVA+A+++  + FLRQV  FM P   +  I V EDN+GAI++A N  ++    +H+D+++H +R+ +E   + + +V S  QHAD LTK++  ++F
Sbjct:  694 GGLVMCGGGCVTWFSRTQKCVTLYTTESEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAYNPITNS-NSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESF 817

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BLAST of mRNA_H-elongata_contig71716.14847.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 6.110e-22
Identity = 49/125 (39.20%), Postives = 82/125 (65.60%), Query Frame = 1

Query:   10 GGAVIMAGGAISWFSRVQKVTVAASSESEYVALAEMVNGLRFLRQVNEFMTPPIDV-AIKVHEDNEGAIKMARNRFSSR*TRQHVDIQYHIVRDAIEGGLVHVEYVRSGEQHADILTKSVDVKTF 381
            GG V+  GG ++WFSR QK    +++E+EYVA+A+++  + FLRQV  FM P   +  I V EDN+GAI++A N  ++    +H+D+++H +R+ +E   + +  V +  QHAD LTK++  ++F
Sbjct:  187 GGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNS-NSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAISKESF 310

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BLAST of mRNA_H-elongata_contig71716.14847.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.210e-21
Identity = 48/125 (38.40%), Postives = 82/125 (65.60%), Query Frame = 1

Query:   10 GGAVIMAGGAISWFSRVQKVTVAASSESEYVALAEMVNGLRFLRQVNEFMTPPIDV-AIKVHEDNEGAIKMARNRFSSR*TRQHVDIQYHIVRDAIEGGLVHVEYVRSGEQHADILTKSVDVKTF 381
            GG V+  GG ++WFSR QK    +++E+EYVA+A+++  + FLRQV  FM P   +  I V EDN+GAI++  N  ++    +H+D+++H +R+ +E   + + +V +  QHAD LTK++  ++F
Sbjct:  242 GGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNS-NSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAISKESF 365

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BLAST of mRNA_H-elongata_contig71716.14847.1 vs. uniprot
Match: A0A6H5KBS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS9_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.370e-21
Identity = 49/125 (39.20%), Postives = 83/125 (66.40%), Query Frame = 1

Query:   10 GGAVIMAGGAISWFSRVQKVTVAASSESEYVALAEMVNGLRFLRQVNEFMTPPIDV-AIKVHEDNEGAIKMARNRFSSR*TRQHVDIQYHIVRDAIEGGLVHVEYVRSGEQHADILTKSVDVKTF 381
            GG V+  GG ++WFSR QK    +++E+EYVA+A+++ G+ FLRQ   FM P   +  I V EDN+GAI++A+N  ++    +H+D+++H +R+ +    + + +V S  QHAD LTK++  ++F
Sbjct:  131 GGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKGVLFLRQGWRFMLPDAGMPCIPVFEDNQGAIQIAQNPITNS-NSKHIDVRHHFIRELVMRKEISITHVTSEFQHADFLTKAISKESF 254

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BLAST of mRNA_H-elongata_contig71716.14847.1 vs. uniprot
Match: A0A6H5K7Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Y0_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.990e-21
Identity = 51/125 (40.80%), Postives = 83/125 (66.40%), Query Frame = 1

Query:   10 GGAVIMAGGAISWFSRVQKVTVAASSESEYVALAEMVNGLRFLRQVNEFMTPP-IDVAIKVHEDNEGAIKMARNRFSSR*TRQHVDIQYHIVRDAIEGGLVHVEYVRSGEQHADILTKSVDVKTF 381
            GG V+ AGGAI+WFS+ QK    ++++++YVA+A+M   +  LRQV  FM P  +   I +HEDNEGAI++A++  S+    +H+D+++H +R  ++   V + +V S  QHAD LTK++  + F
Sbjct: 1650 GGVVMCAGGAIAWFSKTQKCVTLSTTQADYVAMADMGKEILLLRQVWRFMLPKELRPCIPLHEDNEGAIQVAKHPISNS-NSKHIDVRHHFLRQLVDEKEVEIIHVASKYQHADFLTKALPEREF 1773

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig71716.14847.1 vs. uniprot

BLAST of mRNA_H-elongata_contig71716.14847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5K684_9PHAE	8.330e-23	39.84	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K6X8_9PHAE	1.150e-22	44.17	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L3H4_9PHAE	2.320e-22	40.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JHY5_9PHAE	3.060e-22	40.00	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6H5K8K2_9PHAE	3.890e-22	40.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KQN5_9PHAE	5.480e-22	40.80	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KP70_9PHAE	6.110e-22	39.20	Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L4G9_9PHAE	1.210e-21	38.40	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KBS9_9PHAE	1.370e-21	39.20	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K7Y0_9PHAE	1.990e-21	40.80	Integrase catalytic domain-containing protein n=1 ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig71716	contig	H-elongata_contig71716:2657..3037 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	381
Cds size	222
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig71716.14847.1	prot_H-elongata_contig71716.14847.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig71716 2681..2902 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931118.534891-UTR-H-elongata_contig71716:2656..2680	1622931118.534891-UTR-H-elongata_contig71716:2656..2680	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig71716 2657..2680 +
1691679705.8633528-UTR-H-elongata_contig71716:2656..2680	1691679705.8633528-UTR-H-elongata_contig71716:2656..2680	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig71716 2657..2680 +
1622931118.5646284-UTR-H-elongata_contig71716:2902..3037	1622931118.5646284-UTR-H-elongata_contig71716:2902..3037	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig71716 2903..3037 +
1691679705.8836327-UTR-H-elongata_contig71716:2902..3037	1691679705.8836327-UTR-H-elongata_contig71716:2902..3037	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig71716 2903..3037 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931118.54928-CDS-H-elongata_contig71716:2680..2902	1622931118.54928-CDS-H-elongata_contig71716:2680..2902	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig71716 2681..2902 +
1691679705.8735826-CDS-H-elongata_contig71716:2680..2902	1691679705.8735826-CDS-H-elongata_contig71716:2680..2902	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig71716 2681..2902 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig71716:2657..3037+
coding sequence from alignment at H-elongata_contig71716:2657..3037+

protein sequence of mRNA_H-elongata_contig71716.14847.1

>prot_H-elongata_contig71716.14847.1 ID=prot_H-elongata_contig71716.14847.1|Name=mRNA_H-elongata_contig71716.14847.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
MAGGAISWFSRVQKVTVAASSESEYVALAEMVNGLRFLRQVNEFMTPPID
VAIKVHEDNEGAIKMARNRFSSR*

mRNA from alignment at H-elongata_contig71716:2657..3037+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig71716.14847.1 ID=mRNA_H-elongata_contig71716.14847.1|Name=mRNA_H-elongata_contig71716.14847.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=381bp|location=Sequence derived from alignment at H-elongata_contig71716:2657..3037+ (Himanthalia elongata Himel1 dioecious)
CTCAGTGTCGGGGGGGCAGTGATAATGGCTGGCGGGGCCATTAGTTGGTT
TTCACGAGTGCAAAAGGTAACGGTGGCGGCGTCATCCGAATCGGAATACG
TCGCGCTGGCTGAGATGGTAAACGGGTTGCGTTTCCTACGACAGGTCAAT
GAGTTCATGACCCCCCCAATCGACGTCGCCATCAAGGTACACGAGGACAA
CGAAGGCGCAATCAAGATGGCGAGAAACCGCTTCAGCAGTCGATGAACGA
GGCAGCACGTAGACATCCAGTATCACATTGTCCGCGACGCGATCGAGGGG
GGGTTGGTTCACGTAGAATACGTTCGGTCCGGGGAGCAGCACGCCGACAT
CCTCACGAAGTCGGTAGACGTCAAGACTTTT

Coding sequence (CDS) from alignment at H-elongata_contig71716:2657..3037+

>mRNA_H-elongata_contig71716.14847.1 ID=mRNA_H-elongata_contig71716.14847.1|Name=mRNA_H-elongata_contig71716.14847.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig71716:2657..3037+ (Himanthalia elongata Himel1 dioecious)
ATGGCTGGCGGGGCCATTAGTTGGTTTTCACGAGTGCAAAAGGTAACGGT
GGCGGCGTCATCCGAATCGGAATACGTCGCGCTGGCTGAGATGGTAAACG
GGTTGCGTTTCCTACGACAGGTCAATGAGTTCATGACCCCCCCAATCGAC
GTCGCCATCAAGGTACACGAGGACAACGAAGGCGCAATCAAGATGGCGAG
AAACCGCTTCAGCAGTCGATGAATGGCTGGCGGGGCCATTAGTTGGTTTT
CACGAGTGCAAAAGGTAACGGTGGCGGCGTCATCCGAATCGGAATACGTC
GCGCTGGCTGAGATGGTAAACGGGTTGCGTTTCCTACGACAGGTCAATGA
GTTCATGACCCCCCCAATCGACGTCGCCATCAAGGTACACGAGGACAACG
AAGGCGCAATCAAGATGGCGAGAAACCGCTTCAGCAGTCGATGA