mRNA_H-elongata_contig71703.14846.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71703.14846.1
Unique NamemRNA_H-elongata_contig71703.14846.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71703.14846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71703contigH-elongata_contig71703:1378..3070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.4
Seed ortholog evalue5.2e-20
Seed eggNOG ortholog2880.D8LB29
KEGG koko:K20408
KEGG Pathwayko04150,map04150
EggNOG free text desc.positive regulation of TOR signaling
EggNOG OGsKOG0269@1,KOG0269@2759
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-27_005450.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons3
Model size494
Cds size492
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71703.14846.1prot_H-elongata_contig71703.14846.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71703 1378..3070 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931118.4632676-CDS-H-elongata_contig71703:1377..14991622931118.4632676-CDS-H-elongata_contig71703:1377..1499Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71703 1378..1499 +
1691679705.8242192-CDS-H-elongata_contig71703:1377..14991691679705.8242192-CDS-H-elongata_contig71703:1377..1499Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71703 1378..1499 +
1622931118.4756482-CDS-H-elongata_contig71703:1763..19281622931118.4756482-CDS-H-elongata_contig71703:1763..1928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71703 1764..1928 +
1691679705.840216-CDS-H-elongata_contig71703:1763..19281691679705.840216-CDS-H-elongata_contig71703:1763..1928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71703 1764..1928 +
1622931118.490637-CDS-H-elongata_contig71703:2865..30701622931118.490637-CDS-H-elongata_contig71703:2865..3070Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71703 2866..3070 +
1691679705.8513963-CDS-H-elongata_contig71703:2865..30701691679705.8513963-CDS-H-elongata_contig71703:2865..3070Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71703 2866..3070 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71703.14846.1

>prot_H-elongata_contig71703.14846.1 ID=prot_H-elongata_contig71703.14846.1|Name=mRNA_H-elongata_contig71703.14846.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=164bp
MVAVPPLALGSGRGTLARDVGTNQRPGRGGSLHQTDAKASRGRLTMFPVS
DTPVALDKARWRHTPATSIWAPGPRSTMSGGHMDPGPQLTEMLATSYAFR
GHHVRDLCACNADVCLAMGLLEMAYTWHEISILLAGIPGGVPVPLGHSRP
HDLLVALASGGRTM
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mRNA from alignment at H-elongata_contig71703:1378..3070+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71703.14846.1 ID=mRNA_H-elongata_contig71703.14846.1|Name=mRNA_H-elongata_contig71703.14846.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1693bp|location=Sequence derived from alignment at H-elongata_contig71703:1378..3070+ (Himanthalia elongata Himel1 dioecious)
ATGGTTGCGGTCCCGCCGCTGGCGCTGGGGAGTGGCAGGGGGACATTGGC
GCGCGACGTCGGCACGAATCAGCGTCCCGGAAGAGGAGGAAGCTTGCACC
AGACAGACGCCAAAGCCTCCAGGTTACGGGAGATATTGTGATTGAAATTG
AATGGCCATCATGGTCTCAAGCGACCCTGCTTGGCGTCCGTTCATGACAT
GTTTCCGACGGGGGGGCGGAGGGTTCTAGCGTGCCCGATTGAACGGAGCA
GGCAGCCACGTAAATGTTTTAGGGGGGGAGGGGGGGAGGGGGACTACTGA
CGAGGAAGATACTTAGGCTACAAAATCAGCCCGAGCTTGAGAAATATGCA
AACACAACGAAACCAAAACTTCTCCTGAACACCCAGGGGGCGGCTCACGA
TGTTCCCCGTGTCGGACACGCCGGTGGCGCTGGACAAGGCCCGTTGGAGG
CACACCCCTGCCACGTCGATCTGGGCCCCCGGCCCGCGGTCGACAATGTC
GGGGGGACACATGGATCCCGGACCCCAGCTGACCGAGATGTTGGCCACAA
GGTGCATCTCTCTTATTATGTGTGTGTGTGTGTGTGTGCGTGTGTGTATT
TATTAAATTGCACATAACCGCGCAATCCGGCCCTGTCGTCCTAGTCCTTC
TATGCCACTTGTATTGATCCTCCTAGGGGGGGATCAATGATACTTATTCC
GTGTGTGTGTGTGTGCGTGCTTATTAAATTGCACATAACCGCACAATCCG
GCTCTGCCACGCTATCATAGTCATTCTAGGCTACTGTACTCTACTCTACT
ATACTGTACTCTACTATACTCTACTTTACTCTACTCTACTCTACTCTTAT
CTACTGTTCTTTACCGCATGTAACCCAACTGGTGTGTATGTCTCTTCAGC
TCTCCTCTTCACCAGCAGGATAAGGGAACATATATAGCGGTATAAAGATA
TAACGACATAAAGACGGGTAGATAAATATCCCTTCGTAAGGTGAATGAGC
TAGGGCACGTCCCCTCCCCTCTCTTCTCCTCGCCTCGATGGGGTGAATCT
TCTCAAGTTGTTTCTACTTTTCCCCCTACTTTGACAAAAACAAGACAATA
TAAAACATAAATATATAGTAGTAGTATATAATACAAAACATAAATATAGT
AGTAGTATATAATATAAAACATAAATATATAGTAGTAGTATATAATATAT
ATACCTTTTTACCTACACTCGACACAACCAACCAAAGCATCGAACACGTC
GTGTTAGAAAAGCCCGGAGACTCTACTGCTGTGTACGCCCCCCTCCCGAG
GAGACATGGTCAGCGGTCCAACAGTGAAGGCGTGTAAAGCTGGTAGGATA
TTTGTGAAACGCAGCCTGGTCGGCGAAAACTCGACATATTACTCCGTTCC
AGCATTGCTGAGGCGCGCGAAATCTATGTGCGTAAGGATACGGCATGTGT
TCACCCCCCCCCCCTCCCACGCCTTTGCGTTTCTGAAGCTACGCCTTCCG
CGGGCACCACGTCAGAGACCTTTGCGCCTGCAACGCGGACGTCTGCCTAG
CCATGGGCCTCCTGGAGATGGCGTACACGTGGCATGAAATCAGTATCCTT
CTGGCGGGCATCCCCGGCGGCGTGCCCGTCCCTCTGGGGCACTCGAGACC
GCACGATCTTCTGGTGGCGTTGGCGTCCGGGGGTCGTACGATG
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Coding sequence (CDS) from alignment at H-elongata_contig71703:1378..3070+

>mRNA_H-elongata_contig71703.14846.1 ID=mRNA_H-elongata_contig71703.14846.1|Name=mRNA_H-elongata_contig71703.14846.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=984bp|location=Sequence derived from alignment at H-elongata_contig71703:1378..3070+ (Himanthalia elongata Himel1 dioecious)
ATGGTTGCGGTCCCGCCGCTGGCGCTGGGGAGTGGCAGGGGGACATTGGC
GCGCGACGTCGGCACGAATCAGCGTCCCGGAAGAGGAGGAAGCTTGCACC
AGACAGACGCCAAAGCCTCCAGATGGTTGCGGTCCCGCCGCTGGCGCTGG
GGAGTGGCAGGGGGACATTGGCGCGCGACGTCGGCACGAATCAGCGTCCC
GGAAGAGGAGGAAGCTTGCACCAGACAGACGCCAAAGCCTCCAGGGGGCG
GCTCACGATGTTCCCCGTGTCGGACACGCCGGTGGCGCTGGACAAGGCCC
GTTGGAGGCACACCCCTGCCACGTCGATCTGGGCCCCCGGCCCGCGGTCG
ACAATGTCGGGGGGACACATGGATCCCGGACCCCAGCTGACCGAGATGTT
GGCCACAAGGGGGCGGCTCACGATGTTCCCCGTGTCGGACACGCCGGTGG
CGCTGGACAAGGCCCGTTGGAGGCACACCCCTGCCACGTCGATCTGGGCC
CCCGGCCCGCGGTCGACAATGTCGGGGGGACACATGGATCCCGGACCCCA
GCTGACCGAGATGTTGGCCACAAGCTACGCCTTCCGCGGGCACCACGTCA
GAGACCTTTGCGCCTGCAACGCGGACGTCTGCCTAGCCATGGGCCTCCTG
GAGATGGCGTACACGTGGCATGAAATCAGTATCCTTCTGGCGGGCATCCC
CGGCGGCGTGCCCGTCCCTCTGGGGCACTCGAGACCGCACGATCTTCTGG
TGGCGTTGGCGTCCGGGGGTCGTACGATGCTACGCCTTCCGCGGGCACCA
CGTCAGAGACCTTTGCGCCTGCAACGCGGACGTCTGCCTAGCCATGGGCC
TCCTGGAGATGGCGTACACGTGGCATGAAATCAGTATCCTTCTGGCGGGC
ATCCCCGGCGGCGTGCCCGTCCCTCTGGGGCACTCGAGACCGCACGATCT
TCTGGTGGCGTTGGCGTCCGGGGGTCGTACGATG
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