mRNA_H-elongata_contig71702.14845.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71702.14845.1
Unique NamemRNA_H-elongata_contig71702.14845.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig71702.14845.1 vs. uniprot
Match: D8LI80_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI80_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 3.590e-22
Identity = 52/74 (70.27%), Postives = 59/74 (79.73%), Query Frame = 1 
Query:  241 LNIEQAKRDLNDLVAQSVARAEGQQSNVAFVKTHKTGSTTIASVLYRYGLRHGLRVARFEVEGTAVTLGHAAEQ 462
            L  E+ +  LN LVA +V R  GQ+ NVAFVKTHKT STTI +VLYRYGLRHG RVARF+VEGTAVTL HAAE+
Sbjct:  146 LRREERRARLNGLVAAAVERQRGQECNVAFVKTHKTASTTITAVLYRYGLRHGRRVARFKVEGTAVTLEHAAEE 219
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BLAST of mRNA_H-elongata_contig71702.14845.1 vs. uniprot
Match: A0A6H5KIJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIJ9_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 4.020e-21
Identity = 52/80 (65.00%), Postives = 62/80 (77.50%), Query Frame = 1 
Query:  238 LLNIEQAKRD-----LNDLVAQSVARAEGQQSNVAFVKTHKTGSTTIASVLYRYGLRHGLRVARFEVEGTAVTLGHAAEQ 462
            L + +QA+R+     LN LVA +V R  GQ+ N+ FVKTHKT STTI +VLYRYGLRHG RVARF+VEGTAVTL HAAE+
Sbjct:  195 LNDADQARREERRARLNGLVAAAVERQRGQECNLVFVKTHKTASTTITAVLYRYGLRHGRRVARFKVEGTAVTLEHAAEE 274
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BLAST of mRNA_H-elongata_contig71702.14845.1 vs. uniprot
Match: D7FX25_ECTSI (Sulfotransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX25_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 6.920e-14
Identity = 40/78 (51.28%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:  232 SELLNIEQAKRDLNDLVAQSVARAEGQQSNVAFVKTHKTGSTTIASVLYRYGLRHGLRVARFEVEGTAVTLGHAAEQV 465
            SE L +E  +  LN LV  S ++   Q SN+AF+KTHKT STT+AS+LYRYG+RH   +A+F+  GT V L  A++QV
Sbjct:  135 SEDLPVEAMRDYLNGLVYDSASKRTEQLSNIAFIKTHKTASTTLASILYRYGMRHDSNIAKFDQGGTYVDLDVASKQV 212
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BLAST of mRNA_H-elongata_contig71702.14845.1 vs. uniprot
Match: D8LRU8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRU8_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 5.470e-13
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:  268 LNDLVAQSVARAEGQQSNVAFVKTHKTGSTTIASVLYRYGLRHGLRVARFEVEGTAVTLGHAAEQ 462
            LN+LVA S A+ EGQ SN+AF+KTHKT STT A +LYRY  RH +++A F+   +A+ L  A +Q
Sbjct:   84 LNNLVANSAAQTEGQLSNIAFIKTHKTASTTFAFLLYRYARRHNVKLAHFDDHNSAIPLREAVQQ 148
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BLAST of mRNA_H-elongata_contig71702.14845.1 vs. uniprot
Match: A0A6H5L8E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8E6_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 3.770e-11
Identity = 37/66 (56.06%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:  268 LNDLVAQSVARAEGQQSNVAFVKTHKTGSTTIASVLYRYGLRHGLRVARF-EVEGTAVTLGHAAEQ 462
            LNDLV  S   A+ Q +NV FVKTHKTGSTT+A+V YRY +RH L++A F + +GT   L  AA Q
Sbjct:   39 LNDLVEASARDADNQVANVVFVKTHKTGSTTLAAVFYRYAVRHKLKLAHFGKGKGTIANLKKAATQ 104
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BLAST of mRNA_H-elongata_contig71702.14845.1 vs. uniprot
Match: D8LK91_ECTSI (Sulfotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK91_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 1.700e-10
Identity = 35/64 (54.69%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:  268 LNDLVAQSVARAEGQQSNVAFVKTHKTGSTTIASVLYRYGLRHGLRVARFEVEGTAVTLGHAAE 459
            LN LV +SVA  + Q  N+AFVKTHKT STT A++LYRYG RH L VA F    +++ L  A E
Sbjct:   10 LNLLVDESVAATKNQTCNIAFVKTHKTASTTAATLLYRYGKRHDLNVAHFHGHQSSIELPEAIE 73
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BLAST of mRNA_H-elongata_contig71702.14845.1 vs. uniprot
Match: A0A6H5JMW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMW5_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.370e-9
Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:  268 LNDLVAQSVARAEGQQSNVAFVKTHKTGSTTIASVLYRYGLRHGLRVARFEVEGTAVTLGHAAEQ 462
            LN LVA S    + Q SN+A  KTHKTGSTT+A +L+RYG RH L VA F   G+ + +  AA Q
Sbjct:  138 LNGLVAASAENKDEQLSNLALFKTHKTGSTTLAILLHRYGRRHDLEVAHFPGFGSTIPIEEAARQ 202
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BLAST of mRNA_H-elongata_contig71702.14845.1 vs. uniprot
Match: D8LRU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRU7_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 1.470e-9
Identity = 32/68 (47.06%), Postives = 49/68 (72.06%), Query Frame = 1 
Query:  268 LNDLVAQSVARAEGQQSNVAFVKTHKTGSTTIASVLYRYGLRHGLRVARFEVEGTAVTLGHAAEQVCV 471
            LN+LV  ++   + Q +NVAFVKTHKT STT+A+++YRY  RH L+++ F   G+AV+L  AA ++ +
Sbjct:  108 LNELVEATMLDTDSQVANVAFVKTHKTASTTLAAIMYRYAARHELKLSHFG-GGSAVSLKSAAAKISI 174
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BLAST of mRNA_H-elongata_contig71702.14845.1 vs. uniprot
Match: A0A6G6CDJ0_SACJA (Sulfotransferase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A6G6CDJ0_SACJA)

HSP 1 Score: 59.3 bits (142), Expect = 2.500e-7
Identity = 26/49 (53.06%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:  268 LNDLVAQSVARAEGQQSNVAFVKTHKTGSTTIASVLYRYGLRHGLRVAR 414
            LN LV  SVA  + Q+ N+AF  T++TGST++A +LYRY +RH L++AR
Sbjct:  112 LNGLVEASVATTDHQEGNIAFANTYQTGSTSMAGILYRYAVRHNLKLAR 160
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BLAST of mRNA_H-elongata_contig71702.14845.1 vs. uniprot
Match: A0A6H5JVG3_9PHAE (ST protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVG3_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 3.250e-7
Identity = 32/67 (47.76%), Postives = 42/67 (62.69%), Query Frame = 1 
Query:  268 LNDLVAQSVARAEGQQSNVAFVKTHKTGSTTIASVLYRYGLRHGLRVARFEVEGTA-VTLGHAAEQV 465
            LN +V +S  +  GQ+ NVAFVKTHKT STT+A +  RY  RH  ++A FE    + V L  A +QV
Sbjct:   98 LNLMVTESAGKTGGQKCNVAFVKTHKTASTTLAMIFVRYAKRHDKKLASFEGRFVSNVPLAVAVQQV 164
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71702.14845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LI80_ECTSI3.590e-2270.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIJ9_9PHAE4.020e-2165.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX25_ECTSI6.920e-1451.28Sulfotransferase n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
D8LRU8_ECTSI5.470e-1353.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5L8E6_9PHAE3.770e-1156.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LK91_ECTSI1.700e-1054.69Sulfotransferase n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A6H5JMW5_9PHAE1.370e-952.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRU7_ECTSI1.470e-947.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6G6CDJ0_SACJA2.500e-753.06Sulfotransferase n=1 Tax=Saccharina japonica TaxID... [more]
A0A6H5JVG3_9PHAE3.250e-747.76ST protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71702contigH-elongata_contig71702:2365..2847 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue4.7e-13
Seed eggNOG ortholog2880.D7FX25
Preferred nameGAL3ST3
KEGG rclassRC00007,RC00231
KEGG koko:K01019,ko:K09676
KEGG ReactionR04017,R05105,R10805
KEGG Pathwayko00565,ko00600,ko01100,map00565,map00600,map01100
KEGG ModuleM00067
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005975,GO:0005976,GO:0005996,GO:0006022,GO:0006029,GO:0006790,GO:0006807,GO:0008146,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009311,GO:0009987,GO:0016020,GO:0016021,GO:0016740,GO:0016782,GO:0017076,GO:0019538,GO:0030166,GO:0030246,GO:0030309,GO:0030554,GO:0031224,GO:0032553,GO:0032555,GO:0032559,GO:0034645,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0044425,GO:0050656,GO:0050694,GO:0050698,GO:0071704,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901681
EggNOG free text desc.galactosylceramide sulfotransferase activity
EggNOG OGs2CM97@1,2QPNT@2759
EC2.8.2.11
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Exons1
Model size483
Cds size483
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931118.416644-CDS-H-elongata_contig71702:2364..28471622931118.416644-CDS-H-elongata_contig71702:2364..2847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71702 2365..2847 +
1691679705.8023698-CDS-H-elongata_contig71702:2364..28471691679705.8023698-CDS-H-elongata_contig71702:2364..2847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71702 2365..2847 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71702.14845.1prot_H-elongata_contig71702.14845.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71702 2365..2847 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71702.14845.1

>prot_H-elongata_contig71702.14845.1 ID=prot_H-elongata_contig71702.14845.1|Name=mRNA_H-elongata_contig71702.14845.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=161bp
DETTTADVDLAPRSDGGRSANPDEGVEDNGKGGSGGESMEDDGGTGGMAL
PASGSGTEGKGNGEEGFDNSPRDGGWESELLNIEQAKRDLNDLVAQSVAR
AEGQQSNVAFVKTHKTGSTTIASVLYRYGLRHGLRVARFEVEGTAVTLGH
AAEQVCVCVY*
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mRNA from alignment at H-elongata_contig71702:2365..2847+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71702.14845.1 ID=mRNA_H-elongata_contig71702.14845.1|Name=mRNA_H-elongata_contig71702.14845.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=483bp|location=Sequence derived from alignment at H-elongata_contig71702:2365..2847+ (Himanthalia elongata Himel1 dioecious)
GACGAGACAACCACGGCGGACGTGGATCTCGCTCCTCGATCGGACGGCGG
GAGGTCCGCAAACCCAGATGAAGGCGTTGAAGACAATGGGAAAGGGGGAT
CAGGGGGCGAGAGCATGGAAGACGACGGCGGGACGGGTGGCATGGCCTTG
CCAGCGAGTGGAAGCGGCACGGAGGGGAAGGGAAACGGGGAGGAGGGGTT
TGATAATTCCCCGCGGGACGGAGGGTGGGAGTCCGAGCTGCTGAACATCG
AGCAAGCGAAACGGGACTTGAACGATCTCGTTGCTCAGTCGGTGGCGAGG
GCAGAGGGGCAGCAGAGCAACGTAGCTTTCGTGAAGACACATAAGACAGG
ATCCACGACGATCGCGTCCGTGTTGTATCGGTACGGGCTACGGCATGGGC
TGCGAGTGGCGCGCTTCGAGGTGGAGGGAACCGCGGTTACCCTCGGGCAT
GCGGCGGAGCAGGTGTGTGTGTGTGTTTATTAA
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Coding sequence (CDS) from alignment at H-elongata_contig71702:2365..2847+

>mRNA_H-elongata_contig71702.14845.1 ID=mRNA_H-elongata_contig71702.14845.1|Name=mRNA_H-elongata_contig71702.14845.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=966bp|location=Sequence derived from alignment at H-elongata_contig71702:2365..2847+ (Himanthalia elongata Himel1 dioecious)
GACGAGACAACCACGGCGGACGTGGATCTCGCTCCTCGATCGGACGGCGG
GAGGTCCGCAAACCCAGATGAAGGCGTTGAAGACAATGGGAAAGGGGGAT
CAGGGGGCGAGAGCATGGAAGACGACGGCGGGACGGGTGGCATGGCCTTG
CCAGCGAGTGGAAGCGGCACGGAGGGGAAGGGAAACGGGGAGGAGGGGTT
TGATAATTCCCCGCGGGACGGAGGGTGGGAGTCCGAGCTGCTGAACATCG
AGCAAGCGAAACGGGACTTGAACGATCTCGTTGCTCAGTCGGTGGCGAGG
GCAGAGGGGCAGCAGAGCAACGTAGCTTTCGTGAAGACACATAAGACAGG
ATCCACGACGATCGCGTCCGTGTTGTATCGGTACGGGCTACGGCATGGGC
TGCGAGTGGCGCGCTTCGAGGTGGAGGGAACCGCGGTTACCCTCGGGCAT
GCGGCGGAGCAGGTGTGTGTGTGTGTTTATTAAGACGAGACAACCACGGC
GGACGTGGATCTCGCTCCTCGATCGGACGGCGGGAGGTCCGCAAACCCAG
ATGAAGGCGTTGAAGACAATGGGAAAGGGGGATCAGGGGGCGAGAGCATG
GAAGACGACGGCGGGACGGGTGGCATGGCCTTGCCAGCGAGTGGAAGCGG
CACGGAGGGGAAGGGAAACGGGGAGGAGGGGTTTGATAATTCCCCGCGGG
ACGGAGGGTGGGAGTCCGAGCTGCTGAACATCGAGCAAGCGAAACGGGAC
TTGAACGATCTCGTTGCTCAGTCGGTGGCGAGGGCAGAGGGGCAGCAGAG
CAACGTAGCTTTCGTGAAGACACATAAGACAGGATCCACGACGATCGCGT
CCGTGTTGTATCGGTACGGGCTACGGCATGGGCTGCGAGTGGCGCGCTTC
GAGGTGGAGGGAACCGCGGTTACCCTCGGGCATGCGGCGGAGCAGGTGTG
TGTGTGTGTTTATTAA
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