mRNA_H-elongata_contig71677.14841.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig71677.14841.1 vs. uniprot
Match: A0A6H5LRB6_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LRB6_9PHAE) HSP 1 Score: 171 bits (434), Expect = 2.010e-49 Identity = 82/127 (64.57%), Postives = 98/127 (77.17%), Query Frame = 1
Query: 1 GYAFVEFSSPEVASIAAETMDGYLLFGKQLKSSVLKYDEIHPNIFQGAGSKLKRVNWHSLYRESFNVNRTPEKDKKIVKKLLARDKARRKKFAALGIDYDFPGFAASLKDRKVAEGPFQDIKTPKTN 381
GYA+VEF+SPEVA I AETM+GY LF KQL VLK++EIHPN+F GAG K ++VNWH LYRE +N +RT KD+K KLL +DKA++ K A LGIDYDFPGF A+LKDR VA+GPFQ K K N
Sbjct: 115 GYAYVEFASPEVAQIVAETMNGYYLFDKQLVCRVLKFEEIHPNLFDGAGVKFRKVNWHGLYREKYNADRTQVKDEKHTAKLLKKDKAKKDKLAKLGIDYDFPGFVATLKDRNVAKGPFQKPKGAKQN 241
BLAST of mRNA_H-elongata_contig71677.14841.1 vs. uniprot
Match: A0A369RRV5_9METZ (MKI67 FHA domain-interacting nucleolar phosphoprotein-like n=1 Tax=Trichoplax sp. H2 TaxID=287889 RepID=A0A369RRV5_9METZ) HSP 1 Score: 111 bits (277), Expect = 4.370e-28 Identity = 48/106 (45.28%), Postives = 74/106 (69.81%), Query Frame = 1
Query: 1 GYAFVEFSSPEVASIAAETMDGYLLFGKQLKSSVLKYDEIHPNIFQGAGSKLKRVNWHSLYRESFNVNRTPEKDKKIVKKLLARDKARRKKFAALGIDYDFPGFAA 318
GYAF+EFS+ +VA+I AETM+ Y++ G+ LK ++K + +HP F+GA K +++NW L ++ N +T +++ K+V KL+ + RRKK LGIDY FPG+AA
Sbjct: 90 GYAFIEFSNQDVATIVAETMNNYMMCGRLLKCQLMKSESVHPETFKGANRKFRKINWRELAKKQANAPKTDQENTKVVNKLIKAENVRRKKLQKLGIDYQFPGYAA 195
BLAST of mRNA_H-elongata_contig71677.14841.1 vs. uniprot
Match: B3S8Q0_TRIAD (RRM domain-containing protein (Fragment) n=1 Tax=Trichoplax adhaerens TaxID=10228 RepID=B3S8Q0_TRIAD) HSP 1 Score: 108 bits (269), Expect = 1.320e-27 Identity = 46/104 (44.23%), Postives = 72/104 (69.23%), Query Frame = 1
Query: 1 GYAFVEFSSPEVASIAAETMDGYLLFGKQLKSSVLKYDEIHPNIFQGAGSKLKRVNWHSLYRESFNVNRTPEKDKKIVKKLLARDKARRKKFAALGIDYDFPGF 312
GYAF+EFS+ +VA+I AETM+ Y++ G+ LK ++K + +HP F+GA K +++NW L ++ N +T +++ K+V KL+ + RRKK LGIDY FPG+
Sbjct: 42 GYAFIEFSNQDVATIVAETMNNYMMCGRLLKCQLMKSESVHPETFKGANRKFRKINWRELAKKQANAPKTDQENTKVVNKLIKAENVRRKKLQKLGIDYQFPGY 145
BLAST of mRNA_H-elongata_contig71677.14841.1 vs. uniprot
Match: A0A1Y2H203_9FUNG (RRM domain-containing protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2H203_9FUNG) HSP 1 Score: 112 bits (281), Expect = 1.870e-27 Identity = 54/110 (49.09%), Postives = 73/110 (66.36%), Query Frame = 1
Query: 4 YAFVEFSSPEVASIAAETMDGYLLFGKQLKSSVLKYDEIHPNIFQGAGSKLKRVNWHSLYRESFNVNRTPEKDKKIVKKLLARDKARRKKFAALGIDYDFPGFAASLKDR 333
YAF+EF+S EVA I A+TM+ YLLFG QLK L+ +IHP +F GA K K + W + +E N +T + +I KKLL + A+R K A LGIDYDFPG+ AS+ ++
Sbjct: 231 YAFIEFASQEVAEIVADTMNNYLLFGHQLKCKALQPSQIHPAMFSGANKKFKAIPWLKIAKEKHNAEKTTVQSNQIKKKLLKNEAAKRAKLAELGIDYDFPGYKASVPEK 340
BLAST of mRNA_H-elongata_contig71677.14841.1 vs. uniprot
Match: A0A086TK93_9FUNG (RRM domain-containing protein n=1 Tax=Podila verticillata NRRL 6337 TaxID=1069443 RepID=A0A086TK93_9FUNG) HSP 1 Score: 112 bits (279), Expect = 6.730e-27 Identity = 52/110 (47.27%), Postives = 75/110 (68.18%), Query Frame = 1
Query: 4 YAFVEFSSPEVASIAAETMDGYLLFGKQLKSSVLKYDEIHPNIFQGAGSKLKRVNWHSLYRESFNVNRTPEKDKKIVKKLLARDKARRKKFAALGIDYDFPGFAASLKDR 333
YAF+EF+S EVA I A+TMD YLLFG QLK L+ +IHP +F GA K K + W + ++ N +++ + K++ KKLL + A+R K A LGI+YDFPG+ AS+ ++
Sbjct: 273 YAFIEFASQEVADIVADTMDNYLLFGHQLKCKALQPSQIHPAMFVGANKKFKAIPWQKISKDKHNADKSASQIKQVSKKLLKNESAKRAKLADLGIEYDFPGYKASVVEK 382
BLAST of mRNA_H-elongata_contig71677.14841.1 vs. uniprot
Match: A0A8H7PWN8_MORIS (RRM domain-containing protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PWN8_MORIS) HSP 1 Score: 108 bits (271), Expect = 4.030e-26 Identity = 49/110 (44.55%), Postives = 77/110 (70.00%), Query Frame = 1
Query: 4 YAFVEFSSPEVASIAAETMDGYLLFGKQLKSSVLKYDEIHPNIFQGAGSKLKRVNWHSLYRESFNVNRTPEKDKKIVKKLLARDKARRKKFAALGIDYDFPGFAASLKDR 333
+AF+EF + EVA I AETM+ YLL+G LK V+ ++ HP ++ GA K K + W+ L RE N +TPE+ +K+V KL+ +D+ +R+K AA+G++Y+FPG+ A +K +
Sbjct: 213 FAFIEFKTGEVADIVAETMNNYLLYGHLLKCQVVPEEKQHPKLWDGADRKFKAIPWNKLAREQQNKAKTPEQREKLVSKLVKKDQKKREKLAAMGVEYEFPGYEAEIKPK 322
BLAST of mRNA_H-elongata_contig71677.14841.1 vs. uniprot
Match: A0A2V0P5R3_9CHLO (RRM domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P5R3_9CHLO) HSP 1 Score: 103 bits (257), Expect = 3.680e-25 Identity = 50/107 (46.73%), Postives = 71/107 (66.36%), Query Frame = 1
Query: 4 YAFVEFSSPEVASIAAETMDGYLLFGKQLKSSVLKYDEIHPNIFQGAGSKLKRVNWHSLYRESFNVNRTPEKDKKIVKKLLARDKARRKKFAALGIDYDFPGFAASL 324
YAF+EF+ PEVA IAAE M+G+ +F ++L LK E+HP +F+GA K K+V W + E N +RTP++ V KLL RD+ RR++ A GIDY++ G A+L
Sbjct: 85 YAFLEFAVPEVARIAAEAMEGHFMFAQRLSVRCLKRREVHPELFKGANRKFKQVPWRKIEAERHNRDRTPQEHAARVAKLLRRDRKRRERIRAAGIDYEYDGLEAAL 191
BLAST of mRNA_H-elongata_contig71677.14841.1 vs. uniprot
Match: A0A2P6TMU9_CHLSO (MKI67 FHA domain-interacting nucleolar phospho n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TMU9_CHLSO) HSP 1 Score: 102 bits (254), Expect = 8.310e-25 Identity = 53/120 (44.17%), Postives = 78/120 (65.00%), Query Frame = 1
Query: 1 GYAFVEFSSPEVASIAAETMDGYLLFGKQLKSSVLKYDEIHPNIFQGAGSKLKRVNWHSLYRESFNVNRTPEKDKKIVKKLLARDKARRKKFAALGIDYDFPGFAASLKDRKVAEGPFQD 360
GYAF+EFSS EVA IAA+ MDGY+LF ++L S VL DE+HP++F+GA K+V W + RE N +RT + +K ++ + RD+ R+++ A GIDY + AA + K + F+D
Sbjct: 75 GYAFLEFSSAEVAKIAADAMDGYMLFTQKLTSRVLPADEVHPDLFKGANRVFKQVPWQKIERERQNRDRTAAEAEKRARQAVERDERRQRRIAQAGIDYQYEPLAAQVAP-KPKKTKFED 193
BLAST of mRNA_H-elongata_contig71677.14841.1 vs. uniprot
Match: A0A8H7UIB4_9FUNG (RRM domain-containing protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7UIB4_9FUNG) HSP 1 Score: 105 bits (262), Expect = 8.870e-25 Identity = 49/108 (45.37%), Postives = 76/108 (70.37%), Query Frame = 1
Query: 4 YAFVEFSSPEVASIAAETMDGYLLFGKQLKSSVLKYDEIHPNIFQGAGSKLKRVNWHSLYRESFNVNRTPEKDKKIVKKLLARDKARRKKFAALGIDYDFPGFAASLK 327
+AFVEF+S +VA+I AETM+ YLL+G LK V+ +++HP ++ GA K K + W + RE N +T ++ +K+VKKLL +D+ +R+K A +GI+YDF G+ A +K
Sbjct: 217 FAFVEFNSADVATIVAETMNNYLLYGHLLKCEVVPEEKLHPKLWNGANRKFKAIPWAKVAREQQNKPKTHDQREKLVKKLLTKDQKKREKLAEMGIEYDFSGYEAEVK 324
BLAST of mRNA_H-elongata_contig71677.14841.1 vs. uniprot
Match: A0A383WD88_TETOB (RRM domain-containing protein n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A383WD88_TETOB) HSP 1 Score: 102 bits (253), Expect = 1.200e-24 Identity = 52/117 (44.44%), Postives = 73/117 (62.39%), Query Frame = 1
Query: 4 YAFVEFSSPEVASIAAETMDGYLLFGKQLKSSVLKYDEIHPNIFQGAGSKLKRVNWHSLYRESFNVNRTPEKDKKIVKKLLARDKARRKKFAALGIDYDFPGFAASLKDRKVAEGPF 354
YAF+EF +VA IAAETMDGY +F ++L VLK E+HP +F+GA K K+V W + E N +RTPE+ + L+ +DKAR K+ AA GI+Y++ A + RK + F
Sbjct: 78 YAFLEFQHADVAQIAAETMDGYFMFKQKLSCRVLKQSEVHPQLFKGANRKFKKVPWKKIEAERVNKDRTPEEAAARMAALIRKDKARAKRIAAAGIEYEYEPLEAQ-RPRKAQKTTF 193 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71677.14841.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig71677.14841.1 >prot_H-elongata_contig71677.14841.1 ID=prot_H-elongata_contig71677.14841.1|Name=mRNA_H-elongata_contig71677.14841.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp GYAFVEFSSPEVASIAAETMDGYLLFGKQLKSSVLKYDEIHPNIFQGAGSback to top mRNA from alignment at H-elongata_contig71677:1904..2778+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig71677.14841.1 ID=mRNA_H-elongata_contig71677.14841.1|Name=mRNA_H-elongata_contig71677.14841.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=875bp|location=Sequence derived from alignment at H-elongata_contig71677:1904..2778+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig71677:1904..2778+ >mRNA_H-elongata_contig71677.14841.1 ID=mRNA_H-elongata_contig71677.14841.1|Name=mRNA_H-elongata_contig71677.14841.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig71677:1904..2778+ (Himanthalia elongata Himel1 dioecious)back to top |