mRNA_H-elongata_contig71677.14841.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71677.14841.1
Unique NamemRNA_H-elongata_contig71677.14841.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig71677.14841.1 vs. uniprot
Match: A0A6H5LRB6_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LRB6_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 2.010e-49
Identity = 82/127 (64.57%), Postives = 98/127 (77.17%), Query Frame = 1
Query:    1 GYAFVEFSSPEVASIAAETMDGYLLFGKQLKSSVLKYDEIHPNIFQGAGSKLKRVNWHSLYRESFNVNRTPEKDKKIVKKLLARDKARRKKFAALGIDYDFPGFAASLKDRKVAEGPFQDIKTPKTN 381
            GYA+VEF+SPEVA I AETM+GY LF KQL   VLK++EIHPN+F GAG K ++VNWH LYRE +N +RT  KD+K   KLL +DKA++ K A LGIDYDFPGF A+LKDR VA+GPFQ  K  K N
Sbjct:  115 GYAYVEFASPEVAQIVAETMNGYYLFDKQLVCRVLKFEEIHPNLFDGAGVKFRKVNWHGLYREKYNADRTQVKDEKHTAKLLKKDKAKKDKLAKLGIDYDFPGFVATLKDRNVAKGPFQKPKGAKQN 241          
BLAST of mRNA_H-elongata_contig71677.14841.1 vs. uniprot
Match: A0A369RRV5_9METZ (MKI67 FHA domain-interacting nucleolar phosphoprotein-like n=1 Tax=Trichoplax sp. H2 TaxID=287889 RepID=A0A369RRV5_9METZ)

HSP 1 Score: 111 bits (277), Expect = 4.370e-28
Identity = 48/106 (45.28%), Postives = 74/106 (69.81%), Query Frame = 1
Query:    1 GYAFVEFSSPEVASIAAETMDGYLLFGKQLKSSVLKYDEIHPNIFQGAGSKLKRVNWHSLYRESFNVNRTPEKDKKIVKKLLARDKARRKKFAALGIDYDFPGFAA 318
            GYAF+EFS+ +VA+I AETM+ Y++ G+ LK  ++K + +HP  F+GA  K +++NW  L ++  N  +T +++ K+V KL+  +  RRKK   LGIDY FPG+AA
Sbjct:   90 GYAFIEFSNQDVATIVAETMNNYMMCGRLLKCQLMKSESVHPETFKGANRKFRKINWRELAKKQANAPKTDQENTKVVNKLIKAENVRRKKLQKLGIDYQFPGYAA 195          
BLAST of mRNA_H-elongata_contig71677.14841.1 vs. uniprot
Match: B3S8Q0_TRIAD (RRM domain-containing protein (Fragment) n=1 Tax=Trichoplax adhaerens TaxID=10228 RepID=B3S8Q0_TRIAD)

HSP 1 Score: 108 bits (269), Expect = 1.320e-27
Identity = 46/104 (44.23%), Postives = 72/104 (69.23%), Query Frame = 1
Query:    1 GYAFVEFSSPEVASIAAETMDGYLLFGKQLKSSVLKYDEIHPNIFQGAGSKLKRVNWHSLYRESFNVNRTPEKDKKIVKKLLARDKARRKKFAALGIDYDFPGF 312
            GYAF+EFS+ +VA+I AETM+ Y++ G+ LK  ++K + +HP  F+GA  K +++NW  L ++  N  +T +++ K+V KL+  +  RRKK   LGIDY FPG+
Sbjct:   42 GYAFIEFSNQDVATIVAETMNNYMMCGRLLKCQLMKSESVHPETFKGANRKFRKINWRELAKKQANAPKTDQENTKVVNKLIKAENVRRKKLQKLGIDYQFPGY 145          
BLAST of mRNA_H-elongata_contig71677.14841.1 vs. uniprot
Match: A0A1Y2H203_9FUNG (RRM domain-containing protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2H203_9FUNG)

HSP 1 Score: 112 bits (281), Expect = 1.870e-27
Identity = 54/110 (49.09%), Postives = 73/110 (66.36%), Query Frame = 1
Query:    4 YAFVEFSSPEVASIAAETMDGYLLFGKQLKSSVLKYDEIHPNIFQGAGSKLKRVNWHSLYRESFNVNRTPEKDKKIVKKLLARDKARRKKFAALGIDYDFPGFAASLKDR 333
            YAF+EF+S EVA I A+TM+ YLLFG QLK   L+  +IHP +F GA  K K + W  + +E  N  +T  +  +I KKLL  + A+R K A LGIDYDFPG+ AS+ ++
Sbjct:  231 YAFIEFASQEVAEIVADTMNNYLLFGHQLKCKALQPSQIHPAMFSGANKKFKAIPWLKIAKEKHNAEKTTVQSNQIKKKLLKNEAAKRAKLAELGIDYDFPGYKASVPEK 340          
BLAST of mRNA_H-elongata_contig71677.14841.1 vs. uniprot
Match: A0A086TK93_9FUNG (RRM domain-containing protein n=1 Tax=Podila verticillata NRRL 6337 TaxID=1069443 RepID=A0A086TK93_9FUNG)

HSP 1 Score: 112 bits (279), Expect = 6.730e-27
Identity = 52/110 (47.27%), Postives = 75/110 (68.18%), Query Frame = 1
Query:    4 YAFVEFSSPEVASIAAETMDGYLLFGKQLKSSVLKYDEIHPNIFQGAGSKLKRVNWHSLYRESFNVNRTPEKDKKIVKKLLARDKARRKKFAALGIDYDFPGFAASLKDR 333
            YAF+EF+S EVA I A+TMD YLLFG QLK   L+  +IHP +F GA  K K + W  + ++  N +++  + K++ KKLL  + A+R K A LGI+YDFPG+ AS+ ++
Sbjct:  273 YAFIEFASQEVADIVADTMDNYLLFGHQLKCKALQPSQIHPAMFVGANKKFKAIPWQKISKDKHNADKSASQIKQVSKKLLKNESAKRAKLADLGIEYDFPGYKASVVEK 382          
BLAST of mRNA_H-elongata_contig71677.14841.1 vs. uniprot
Match: A0A8H7PWN8_MORIS (RRM domain-containing protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PWN8_MORIS)

HSP 1 Score: 108 bits (271), Expect = 4.030e-26
Identity = 49/110 (44.55%), Postives = 77/110 (70.00%), Query Frame = 1
Query:    4 YAFVEFSSPEVASIAAETMDGYLLFGKQLKSSVLKYDEIHPNIFQGAGSKLKRVNWHSLYRESFNVNRTPEKDKKIVKKLLARDKARRKKFAALGIDYDFPGFAASLKDR 333
            +AF+EF + EVA I AETM+ YLL+G  LK  V+  ++ HP ++ GA  K K + W+ L RE  N  +TPE+ +K+V KL+ +D+ +R+K AA+G++Y+FPG+ A +K +
Sbjct:  213 FAFIEFKTGEVADIVAETMNNYLLYGHLLKCQVVPEEKQHPKLWDGADRKFKAIPWNKLAREQQNKAKTPEQREKLVSKLVKKDQKKREKLAAMGVEYEFPGYEAEIKPK 322          
BLAST of mRNA_H-elongata_contig71677.14841.1 vs. uniprot
Match: A0A2V0P5R3_9CHLO (RRM domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P5R3_9CHLO)

HSP 1 Score: 103 bits (257), Expect = 3.680e-25
Identity = 50/107 (46.73%), Postives = 71/107 (66.36%), Query Frame = 1
Query:    4 YAFVEFSSPEVASIAAETMDGYLLFGKQLKSSVLKYDEIHPNIFQGAGSKLKRVNWHSLYRESFNVNRTPEKDKKIVKKLLARDKARRKKFAALGIDYDFPGFAASL 324
            YAF+EF+ PEVA IAAE M+G+ +F ++L    LK  E+HP +F+GA  K K+V W  +  E  N +RTP++    V KLL RD+ RR++  A GIDY++ G  A+L
Sbjct:   85 YAFLEFAVPEVARIAAEAMEGHFMFAQRLSVRCLKRREVHPELFKGANRKFKQVPWRKIEAERHNRDRTPQEHAARVAKLLRRDRKRRERIRAAGIDYEYDGLEAAL 191          
BLAST of mRNA_H-elongata_contig71677.14841.1 vs. uniprot
Match: A0A2P6TMU9_CHLSO (MKI67 FHA domain-interacting nucleolar phospho n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TMU9_CHLSO)

HSP 1 Score: 102 bits (254), Expect = 8.310e-25
Identity = 53/120 (44.17%), Postives = 78/120 (65.00%), Query Frame = 1
Query:    1 GYAFVEFSSPEVASIAAETMDGYLLFGKQLKSSVLKYDEIHPNIFQGAGSKLKRVNWHSLYRESFNVNRTPEKDKKIVKKLLARDKARRKKFAALGIDYDFPGFAASLKDRKVAEGPFQD 360
            GYAF+EFSS EVA IAA+ MDGY+LF ++L S VL  DE+HP++F+GA    K+V W  + RE  N +RT  + +K  ++ + RD+ R+++ A  GIDY +   AA +   K  +  F+D
Sbjct:   75 GYAFLEFSSAEVAKIAADAMDGYMLFTQKLTSRVLPADEVHPDLFKGANRVFKQVPWQKIERERQNRDRTAAEAEKRARQAVERDERRQRRIAQAGIDYQYEPLAAQVAP-KPKKTKFED 193          
BLAST of mRNA_H-elongata_contig71677.14841.1 vs. uniprot
Match: A0A8H7UIB4_9FUNG (RRM domain-containing protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7UIB4_9FUNG)

HSP 1 Score: 105 bits (262), Expect = 8.870e-25
Identity = 49/108 (45.37%), Postives = 76/108 (70.37%), Query Frame = 1
Query:    4 YAFVEFSSPEVASIAAETMDGYLLFGKQLKSSVLKYDEIHPNIFQGAGSKLKRVNWHSLYRESFNVNRTPEKDKKIVKKLLARDKARRKKFAALGIDYDFPGFAASLK 327
            +AFVEF+S +VA+I AETM+ YLL+G  LK  V+  +++HP ++ GA  K K + W  + RE  N  +T ++ +K+VKKLL +D+ +R+K A +GI+YDF G+ A +K
Sbjct:  217 FAFVEFNSADVATIVAETMNNYLLYGHLLKCEVVPEEKLHPKLWNGANRKFKAIPWAKVAREQQNKPKTHDQREKLVKKLLTKDQKKREKLAEMGIEYDFSGYEAEVK 324          
BLAST of mRNA_H-elongata_contig71677.14841.1 vs. uniprot
Match: A0A383WD88_TETOB (RRM domain-containing protein n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A383WD88_TETOB)

HSP 1 Score: 102 bits (253), Expect = 1.200e-24
Identity = 52/117 (44.44%), Postives = 73/117 (62.39%), Query Frame = 1
Query:    4 YAFVEFSSPEVASIAAETMDGYLLFGKQLKSSVLKYDEIHPNIFQGAGSKLKRVNWHSLYRESFNVNRTPEKDKKIVKKLLARDKARRKKFAALGIDYDFPGFAASLKDRKVAEGPF 354
            YAF+EF   +VA IAAETMDGY +F ++L   VLK  E+HP +F+GA  K K+V W  +  E  N +RTPE+    +  L+ +DKAR K+ AA GI+Y++    A  + RK  +  F
Sbjct:   78 YAFLEFQHADVAQIAAETMDGYFMFKQKLSCRVLKQSEVHPQLFKGANRKFKKVPWKKIEAERVNKDRTPEEAAARMAALIRKDKARAKRIAAAGIEYEYEPLEAQ-RPRKAQKTTF 193          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71677.14841.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LRB6_9PHAE2.010e-4964.57RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A369RRV5_9METZ4.370e-2845.28MKI67 FHA domain-interacting nucleolar phosphoprot... [more]
B3S8Q0_TRIAD1.320e-2744.23RRM domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A1Y2H203_9FUNG1.870e-2749.09RRM domain-containing protein n=1 Tax=Lobosporangi... [more]
A0A086TK93_9FUNG6.730e-2747.27RRM domain-containing protein n=1 Tax=Podila verti... [more]
A0A8H7PWN8_MORIS4.030e-2644.55RRM domain-containing protein n=1 Tax=Mortierella ... [more]
A0A2V0P5R3_9CHLO3.680e-2546.73RRM domain-containing protein n=1 Tax=Raphidocelis... [more]
A0A2P6TMU9_CHLSO8.310e-2544.17MKI67 FHA domain-interacting nucleolar phospho n=1... [more]
A0A8H7UIB4_9FUNG8.870e-2545.37RRM domain-containing protein n=1 Tax=Umbelopsis v... [more]
A0A383WD88_TETOB1.200e-2444.44RRM domain-containing protein n=2 Tax=Scenedesmace... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71677contigH-elongata_contig71677:1904..2778 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score170.2
Seed ortholog evalue6e-40
Seed eggNOG ortholog2880.D7G018
Preferred nameNOP15
KEGG koko:K14838
GOsGO:0000910,GO:0000912,GO:0000915,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006996,GO:0007010,GO:0007049,GO:0008150,GO:0009987,GO:0016043,GO:0019843,GO:0022402,GO:0022607,GO:0022613,GO:0030029,GO:0030036,GO:0030684,GO:0030687,GO:0030865,GO:0030866,GO:0031032,GO:0031974,GO:0031981,GO:0032506,GO:0032991,GO:0042254,GO:0042273,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044837,GO:0051301,GO:0061640,GO:0070013,GO:0071840,GO:0097159,GO:1901363,GO:1990904
EggNOG free text desc.RNA binding
EggNOG OGsKOG4208@1,KOG4208@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryother localisation
Exons2
Model size381
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931118.0075283-CDS-H-elongata_contig71677:1903..21091622931118.0075283-CDS-H-elongata_contig71677:1903..2109Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71677 1904..2109 +
1691679705.6027389-CDS-H-elongata_contig71677:1903..21091691679705.6027389-CDS-H-elongata_contig71677:1903..2109Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71677 1904..2109 +
1622931118.0211608-CDS-H-elongata_contig71677:2603..27781622931118.0211608-CDS-H-elongata_contig71677:2603..2778Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71677 2604..2778 +
1691679705.6156905-CDS-H-elongata_contig71677:2603..27781691679705.6156905-CDS-H-elongata_contig71677:2603..2778Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71677 2604..2778 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71677.14841.1prot_H-elongata_contig71677.14841.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71677 1904..2778 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71677.14841.1

>prot_H-elongata_contig71677.14841.1 ID=prot_H-elongata_contig71677.14841.1|Name=mRNA_H-elongata_contig71677.14841.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
GYAFVEFSSPEVASIAAETMDGYLLFGKQLKSSVLKYDEIHPNIFQGAGS
KLKRVNWHSLYRESFNVNRTPEKDKKIVKKLLARDKARRKKFAALGIDYD
FPGFAASLKDRKVAEGPFQDIKTPKTN
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mRNA from alignment at H-elongata_contig71677:1904..2778+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71677.14841.1 ID=mRNA_H-elongata_contig71677.14841.1|Name=mRNA_H-elongata_contig71677.14841.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=875bp|location=Sequence derived from alignment at H-elongata_contig71677:1904..2778+ (Himanthalia elongata Himel1 dioecious)
GGATACGCGTTTGTGGAGTTCTCCTCTCCTGAGGTGGCGTCTATCGCGGC GGAAACAATGGACGGTTACCTTCTATTCGGAAAGCAGCTAAAATCTTCTG TTCTGAAGTACGATGAGATTCATCCCAACATCTTCCAGGGGGCGGGGTCA AAATTGAAGAGGGTCAATTGGCATAGTTTGTATCGAGAGAGCTTTAACGT AAACAGGTACGGCTGTGCTTTTCATACAGGCCACTAATATTTATATTAAA ATATATTAGAACTCAATTCAAATCCTCCGAACATCTACGCCTTCTCAGTA CCTTAAGGGTACAAGTCCAGGGGACCAACTATGCATTGTGGGTTATGTCT CCGTAATAAAGTTAAGAGAGACAGACATTACATTAGTAAGCTCTTACACC CCATGGACAATGTATTGTTTTTAGCATTATTTACTCGCTTAGTGAGCGTT GTGGCCGTTCGATGGTTTTTGTGTGTTTATGCCAATTTCTCTCAAGTTAC CTCACATTTCCTTATATTAAAAAGGGCACTCCTCAAAATCGTTTAGGCTC TAGAGTATGCCGACGATCAATACTTGCTTACTTCTTTCTTCAAGTGACCT TTATGGTAACGAAATAACTAGCGACCAAGACTCCGGGCGTGCTCGGCTTT ACAACCAATAATCCTTGTGTTCCACCATTCGGCAATACGACTACCGGCAG AACGCCTGAAAAAGACAAGAAAATCGTGAAGAAACTCCTTGCGAGGGACA AGGCCAGACGGAAAAAGTTCGCCGCCCTGGGCATCGACTACGATTTCCCA GGGTTCGCGGCGAGCCTCAAGGATCGCAAGGTGGCAGAAGGACCTTTTCA AGACATCAAGACACCCAAGACTAAC
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Coding sequence (CDS) from alignment at H-elongata_contig71677:1904..2778+

>mRNA_H-elongata_contig71677.14841.1 ID=mRNA_H-elongata_contig71677.14841.1|Name=mRNA_H-elongata_contig71677.14841.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig71677:1904..2778+ (Himanthalia elongata Himel1 dioecious)
GGATACGCGTTTGTGGAGTTCTCCTCTCCTGAGGTGGCGTCTATCGCGGC
GGAAACAATGGACGGTTACCTTCTATTCGGAAAGCAGCTAAAATCTTCTG
TTCTGAAGTACGATGAGATTCATCCCAACATCTTCCAGGGGGCGGGGTCA
AAATTGAAGAGGGTCAATTGGCATAGTTTGTATCGAGAGAGCTTTAACGT
AAACAGGGATACGCGTTTGTGGAGTTCTCCTCTCCTGAGGTGGCGTCTAT
CGCGGCGGAAACAATGGACGGTTACCTTCTATTCGGAAAGCAGCTAAAAT
CTTCTGTTCTGAAGTACGATGAGATTCATCCCAACATCTTCCAGGGGGCG
GGGTCAAAATTGAAGAGGGTCAATTGGCATAGTTTGTATCGAGAGAGCTT
TAACGTAAACAGAACGCCTGAAAAAGACAAGAAAATCGTGAAGAAACTCC
TTGCGAGGGACAAGGCCAGACGGAAAAAGTTCGCCGCCCTGGGCATCGAC
TACGATTTCCCAGGGTTCGCGGCGAGCCTCAAGGATCGCAAGGTGGCAGA
AGGACCTTTTCAAGACATCAAGACACCCAAGACTAACAACGCCTGAAAAA
GACAAGAAAATCGTGAAGAAACTCCTTGCGAGGGACAAGGCCAGACGGAA
AAAGTTCGCCGCCCTGGGCATCGACTACGATTTCCCAGGGTTCGCGGCGA
GCCTCAAGGATCGCAAGGTGGCAGAAGGACCTTTTCAAGACATCAAGACA
CCCAAGACTAAC
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