mRNA_H-elongata_contig71654.14837.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71654.14837.1
Unique NamemRNA_H-elongata_contig71654.14837.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig71654.14837.1 vs. uniprot
Match: A0A6H5KM79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM79_9PHAE)

HSP 1 Score: 323 bits (829), Expect = 2.500e-99
Identity = 200/458 (43.67%), Postives = 265/458 (57.86%), Query Frame = 3 
Query:    3 GLTTLSTNNPFISPITYSIDNSDRVLRATTSSARF-TLEARFLSPSKRCLTSDHERAAMGCESPGPGSYYPVHVMRNFSPPEHWSQV---DKAGRAPR-KQINTKPTWSKPSLPVRPPYIARAGATSKEVKRAWRVKKRAVLSPTISPRCMWVTGVSTPNGLQAWGDISCEIGPINNGCE-LVRSPRSRAPSPRRG-GSVRRGPVHTGETRATSPDFREVRFLGHDLTKQGSGTAKDTPGPGAYNVRPIMSSGTTFAGAR--PKCSRITTVLTAIACAECQVTGKVLS--TTAVAERCW-------PHPPLRCSNRLQPPRRGADSPGPAYGLPSDFDLKRPNKQCFFPPRLVSKSRFS-----GAGRRGHIA------APVSMTDVSALSRARRDMQRYLAKGENGKRGSDDT----LGVPVKTSIGQGILLQVRPNSVSLVQFPWGIFFTAEVLAH 1277
            GLT+LS  N F+SP TY+    +R ++    +A   TLE+R+LSPS RCLT  HER A G +SPGP  YYP H   +F PP+HW++V   DK GR P  +  N K TW + ++P RPP   +A     + +RAW  K+R    P+ +PRCMW+ GV+T  GLQAWGD++   GPI+ G +    SP  R P+PRRG  S RRGP+H+ E RATSP FRE R+L  DLT++G+  A DTPGPG Y++RP +  GT+FAG R   KCS+  TV   +A A+    G+  S   T+ A+            P    S RL  P +G +SPGPAY LPSDFD K  NK+ F PPR    S F      G GR  ++A        V       L +ARR+     + G   K G  D     LGVPV T +G+GILL++R + ++ V+ PWG+ +T EVL H
Sbjct:  110 GLTSLSAGNAFVSPATYTTQPGERAVKEKAPAAVVNTLESRYLSPSTRCLTPSHEREAKGAQSPGPAVYYP-HEAWDFGPPKHWNRVNKSDKPGRMPSSRSFNAKVTWGEATMP-RPPNPVKAAQIPTKEERAWLSKRRGTARPSTAPRCMWLNGVNTRGGLQAWGDVATNTGPIHVGNKGNCASPWDR-PTPRRGPDSQRRGPIHSREVRATSPGFRETRYLNRDLTRKGACKATDTPGPGQYSIRPPLERGTSFAGPRRPTKCSKAATVNAMVASAK----GRAASYEKTSGAKNGMVRGGDRQSRPSTAPSQRLSIPLKGRESPGPAYALPSDFDQKFVNKKTFHPPRCTGTSPFGTEEPRGTGRSANLAPRADEDGHVRAKQTKRLPKARRE----ASSGPVAKSGRVDAIGRALGVPVNTCMGRGILLRIRADGMTFVRLPWGVLYTTEVLTH 556
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71654.14837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KM79_9PHAE2.500e-9943.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71654contigH-elongata_contig71654:79..2389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-20_004790.1
Exons3
Model size1788
Cds size1131
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71654.14837.1prot_H-elongata_contig71654.14837.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71654 563..1995 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931117.6671815-UTR-H-elongata_contig71654:78..5621622931117.6671815-UTR-H-elongata_contig71654:78..562Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71654 79..562 -
1691679705.445936-UTR-H-elongata_contig71654:78..5621691679705.445936-UTR-H-elongata_contig71654:78..562Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71654 79..562 -
1622931117.7094874-UTR-H-elongata_contig71654:1995..20791622931117.7094874-UTR-H-elongata_contig71654:1995..2079Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71654 1996..2079 -
1691679705.4772985-UTR-H-elongata_contig71654:1995..20791691679705.4772985-UTR-H-elongata_contig71654:1995..2079Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71654 1996..2079 -
1622931117.7217875-UTR-H-elongata_contig71654:2300..23891622931117.7217875-UTR-H-elongata_contig71654:2300..2389Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71654 2301..2389 -
1691679705.4879508-UTR-H-elongata_contig71654:2300..23891691679705.4879508-UTR-H-elongata_contig71654:2300..2389Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71654 2301..2389 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931117.6846707-CDS-H-elongata_contig71654:562..14241622931117.6846707-CDS-H-elongata_contig71654:562..1424Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71654 563..1424 -
1691679705.4565969-CDS-H-elongata_contig71654:562..14241691679705.4565969-CDS-H-elongata_contig71654:562..1424Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71654 563..1424 -
1622931117.696195-CDS-H-elongata_contig71654:1726..19951622931117.696195-CDS-H-elongata_contig71654:1726..1995Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71654 1727..1995 -
1691679705.467016-CDS-H-elongata_contig71654:1726..19951691679705.467016-CDS-H-elongata_contig71654:1726..1995Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71654 1727..1995 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71654.14837.1

>prot_H-elongata_contig71654.14837.1 ID=prot_H-elongata_contig71654.14837.1|Name=mRNA_H-elongata_contig71654.14837.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=377bp
MGCESPGPGSYYPVHVMRNFSPPEHWSQVDKAGRAPRKQINTKPTWSKPS
LPVRPPYIARAGATSKEVKRAWRVKKRAVLSPTISPRCMWVTGVSTPNGL
QAWGDISCEIGPINNGCELVRSPRSRAPSPRRGGSVRRGPVHTGETRATS
PDFREVRFLGHDLTKQGSGTAKDTPGPGAYNVRPIMSSGTTFAGARPKCS
RITTVLTAIACAECQVTGKVLSTTAVAERCWPHPPLRCSNRLQPPRRGAD
SPGPAYGLPSDFDLKRPNKQCFFPPRLVSKSRFSGAGRRGHIAAPVSMTD
VSALSRARRDMQRYLAKGENGKRGSDDTLGVPVKTSIGQGILLQVRPNSV
SLVQFPWGIFFTAEVLAHCSKSTIDP*
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mRNA from alignment at H-elongata_contig71654:79..2389-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71654.14837.1 ID=mRNA_H-elongata_contig71654.14837.1|Name=mRNA_H-elongata_contig71654.14837.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2311bp|location=Sequence derived from alignment at H-elongata_contig71654:79..2389- (Himanthalia elongata Himel1 dioecious)
AGGGACTTACGACCTTATCGACAAACAACCCGTTCATCAGCCCGATAACT
TATTCAATAGACAACAGCGACCGTGTCCTCCGAGCGACGGTAAGCGACAG
ATCTCACTTGTTCGGGTTGGGATGGATCTGAATTTCTGTTGGCACTGACT
GTGATATTGCCTGATGCACTGCTAACAATCGGTCATCTTCTATTAATAGT
ATAAAAAAGGAAATACTACCAACGGTCGCAGATTGCCTCTGAACCGTTGG
TCATTTTACGCTGACCTATGAAATCCGCTCGTCATGTTTTATGTTGTACC
CATCTCGCAGACGTCTTCTGCGCGCTTCACCCTCGAAGCGCGCTTTCTGA
GCCCGTCAAAGCGTTGCCTTACTTCAGATCACGAGCGGGCCGCCATGGGA
TGTGAGAGCCCGGGGCCGGGAAGCTACTATCCCGTTCATGTCATGCGGAA
TTTCTCGCCTCCAGAGCACTGGAGCCAAGTGGATAAAGCGGGACGGGCGC
CACGAAAACAAATCAACACCAAGCCGACGTGGAGCAAACCTAGTTTACCG
GTGCGTCCGCCCTACATTGCAAGAGCTGGCGCTACTTCGAAGGAAGTGAA
ACGCGCTTGGAGAGTCAAGAAGAGAGCAGTGCTGAGTCCGACAATCTCGC
CACGATGCATGTGGTAAAAAAACGCGATCTTATGGCAGGGAGAAGCAAGG
CATGGAGAGGATAGGGGGGAGATGGGAGTCACAAGTTTCGCTGTTTGGAT
GCCAAGATCAAAGTATTGTCGTGAATCGTGTTTTTGAAAACAGTTTAGCT
CGTGATCAGTTTTTCGCACCAGCCTCGAGGTGTGTACACCTGATTTGTAT
CGAGCGTCCTGGGGAATCAAAAAGGCTTCTTCACGCATAGGAAGAAAAAT
TAACGCCCAGAGACATAACGAACCCCCGCCCCACGCAACTGACACACCCT
ACTCCACTTGGACAGGGTGACCGGCGTGAGTACTCCTAATGGACTTCAAG
CCTGGGGTGATATTTCCTGCGAAATAGGTCCGATAAACAATGGTTGCGAG
CTCGTCCGCTCACCCAGGTCACGGGCTCCGAGTCCTCGACGTGGTGGGTC
AGTCCGCCGAGGACCAGTGCATACGGGCGAAACTCGGGCAACATCTCCAG
ACTTCCGGGAGGTCAGGTTTCTGGGCCACGATCTCACGAAGCAGGGTTCT
GGTACCGCGAAGGACACACCAGGTCCAGGGGCGTACAACGTGCGGCCGAT
CATGAGCTCTGGCACCACGTTTGCCGGGGCCCGACCCAAGTGCAGTAGGA
TCACGACCGTTTTGACGGCGATCGCGTGCGCGGAGTGCCAGGTGACAGGG
AAGGTCTTAAGCACCACGGCGGTGGCGGAGCGGTGCTGGCCGCATCCCCC
TCTTCGCTGCTCGAACCGATTGCAGCCACCGCGCCGCGGAGCAGACAGCC
CCGGTCCGGCGTATGGCTTGCCGAGCGATTTCGACCTCAAGCGGCCGAAC
AAACAGTGTTTCTTTCCCCCAAGACTTGTATCTAAGTCTAGGTTTTCCGG
CGCGGGAAGGCGGGGGCATATTGCAGCCCCAGTGAGCATGACTGACGTAA
GCGCGCTGTCGCGCGCTCGAAGGGACATGCAGCGTTACTTGGCCAAGGGG
GAAAATGGAAAACGTGGTAGCGATGATACACTTGGCGTGCCCGTGAAGAC
GTCCATAGGACAGGGGATCTTGTTGCAAGTCCGCCCGAACAGCGTGAGCT
TGGTTCAGTTTCCGTGGGGAATTTTCTTTACGGCGGAGGTTCTGGCTCAT
TGCAGTAAATCCACTATTGATCCGTGACGTTCGCCACTTGAGGACATAAC
GCAGTGGCGACGAAACACTGCCACGGTGGTAAAGCTTGTTGCGTGAACTG
GATTGAACACTTTCCACGTTCTCGGATGTATGTATGTTGGGACTCCTTCG
TCATTTTCAAGAGGGTTTCGAGCTACGACCCAGCTTTGATATCTTCGCGG
ATCGGAATGCGTGATATTACATTGGAGTAACGTTTCAGCGCTACATTCGA
CATTCACCATCTCGCCAAAGATCCTACGTCGTTAGAGTTACGATCGTGCG
TGTACTGTAAAAATGCATACGAACTGTCCTGTATAGCAAGGTACGGCGAG
GAGCTCGACGCAATGCGTGAAAATAGTTTCGAATCTCGTCGTTGGGGTTA
CGGCGAGACAGATGCGGGGAGATTAGGAAATAGTACGCCGCTATGCATAA
GTAGGGGATCTGGTTTTATAATCCCCTATCTAATTATTATGCAAGACCCC
ATAGTCAGTTA
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Coding sequence (CDS) from alignment at H-elongata_contig71654:79..2389-

>mRNA_H-elongata_contig71654.14837.1 ID=mRNA_H-elongata_contig71654.14837.1|Name=mRNA_H-elongata_contig71654.14837.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2262bp|location=Sequence derived from alignment at H-elongata_contig71654:79..2389- (Himanthalia elongata Himel1 dioecious)
ATGGGATGTGAGAGCCCGGGGCCGGGAAGCTACTATCCCGTTCATGTCAT
GCGGAATTTCTCGCCTCCAGAGCACTGGAGCCAAGTGGATAAAGCGGGAC
GGGCGCCACGAAAACAAATCAACACCAAGCCGACGTGGAGCAAACCTAGT
TTACCGGTGCGTCCGCCCTACATTGCAAGAGCTGGCGCTACTTCGAAGGA
AGTGAAACGCGCTTGGAGAGTCAAGAAGAGAGCAGTGCTGAGTCCGACAA
TCTCGCCACGATGCATGTGATGGGATGTGAGAGCCCGGGGCCGGGAAGCT
ACTATCCCGTTCATGTCATGCGGAATTTCTCGCCTCCAGAGCACTGGAGC
CAAGTGGATAAAGCGGGACGGGCGCCACGAAAACAAATCAACACCAAGCC
GACGTGGAGCAAACCTAGTTTACCGGTGCGTCCGCCCTACATTGCAAGAG
CTGGCGCTACTTCGAAGGAAGTGAAACGCGCTTGGAGAGTCAAGAAGAGA
GCAGTGCTGAGTCCGACAATCTCGCCACGATGCATGTGGGTGACCGGCGT
GAGTACTCCTAATGGACTTCAAGCCTGGGGTGATATTTCCTGCGAAATAG
GTCCGATAAACAATGGTTGCGAGCTCGTCCGCTCACCCAGGTCACGGGCT
CCGAGTCCTCGACGTGGTGGGTCAGTCCGCCGAGGACCAGTGCATACGGG
CGAAACTCGGGCAACATCTCCAGACTTCCGGGAGGTCAGGTTTCTGGGCC
ACGATCTCACGAAGCAGGGTTCTGGTACCGCGAAGGACACACCAGGTCCA
GGGGCGTACAACGTGCGGCCGATCATGAGCTCTGGCACCACGTTTGCCGG
GGCCCGACCCAAGTGCAGTAGGATCACGACCGTTTTGACGGCGATCGCGT
GCGCGGAGTGCCAGGTGACAGGGAAGGTCTTAAGCACCACGGCGGTGGCG
GAGCGGTGCTGGCCGCATCCCCCTCTTCGCTGCTCGAACCGATTGCAGCC
ACCGCGCCGCGGAGCAGACAGCCCCGGTCCGGCGTATGGCTTGCCGAGCG
ATTTCGACCTCAAGCGGCCGAACAAACAGTGTTTCTTTCCCCCAAGACTT
GTATCTAAGTCTAGGTTTTCCGGCGCGGGAAGGCGGGGGCATATTGCAGC
CCCAGTGAGCATGACTGACGTAAGCGCGCTGTCGCGCGCTCGAAGGGACA
TGCAGCGTTACTTGGCCAAGGGGGAAAATGGAAAACGTGGTAGCGATGAT
ACACTTGGCGTGCCCGTGAAGACGTCCATAGGACAGGGGATCTTGTTGCA
AGTCCGCCCGAACAGCGTGAGCTTGGTTCAGTTTCCGTGGGGAATTTTCT
TTACGGCGGAGGTTCTGGCTCATTGCAGTAAATCCACTATTGATCCGTGA
GGTGACCGGCGTGAGTACTCCTAATGGACTTCAAGCCTGGGGTGATATTT
CCTGCGAAATAGGTCCGATAAACAATGGTTGCGAGCTCGTCCGCTCACCC
AGGTCACGGGCTCCGAGTCCTCGACGTGGTGGGTCAGTCCGCCGAGGACC
AGTGCATACGGGCGAAACTCGGGCAACATCTCCAGACTTCCGGGAGGTCA
GGTTTCTGGGCCACGATCTCACGAAGCAGGGTTCTGGTACCGCGAAGGAC
ACACCAGGTCCAGGGGCGTACAACGTGCGGCCGATCATGAGCTCTGGCAC
CACGTTTGCCGGGGCCCGACCCAAGTGCAGTAGGATCACGACCGTTTTGA
CGGCGATCGCGTGCGCGGAGTGCCAGGTGACAGGGAAGGTCTTAAGCACC
ACGGCGGTGGCGGAGCGGTGCTGGCCGCATCCCCCTCTTCGCTGCTCGAA
CCGATTGCAGCCACCGCGCCGCGGAGCAGACAGCCCCGGTCCGGCGTATG
GCTTGCCGAGCGATTTCGACCTCAAGCGGCCGAACAAACAGTGTTTCTTT
CCCCCAAGACTTGTATCTAAGTCTAGGTTTTCCGGCGCGGGAAGGCGGGG
GCATATTGCAGCCCCAGTGAGCATGACTGACGTAAGCGCGCTGTCGCGCG
CTCGAAGGGACATGCAGCGTTACTTGGCCAAGGGGGAAAATGGAAAACGT
GGTAGCGATGATACACTTGGCGTGCCCGTGAAGACGTCCATAGGACAGGG
GATCTTGTTGCAAGTCCGCCCGAACAGCGTGAGCTTGGTTCAGTTTCCGT
GGGGAATTTTCTTTACGGCGGAGGTTCTGGCTCATTGCAGTAAATCCACT
ATTGATCCGTGA
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