mRNA_H-elongata_contig7159.14831.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7159.14831.1
Unique NamemRNA_H-elongata_contig7159.14831.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig7159.14831.1 vs. uniprot
Match: A0A6H5JRV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV8_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.540e-16
Identity = 51/109 (46.79%), Postives = 63/109 (57.80%), Query Frame = 2 
Query:   20 QAMEEASLIRLTGSLLLIAENVVIESRCRFSPETVLLWTRQVRELGGYFKRDGRGVRERKWILNEEDLKMELIGWLKAQKRVTTKKTHEYINNVLLARE-GGILRLAQY 343
            + + EAS +R   SLL IA  V       ++  T+L W R  R  GG FK D RGV ER WI++EEDLK ELI W++ QKR+T K    YIN  L A E G + RL  Y
Sbjct:   99 ELLNEASRLRHESSLLRIAARVNSAGSRVYAASTILGWLRDFRGHGG-FKLDSRGVHERDWIMSEEDLKDELIKWMRRQKRLTVKDVQNYINQWLFANEIGDLSRLLSY 206
[Close]
BLAST of mRNA_H-elongata_contig7159.14831.1 vs. uniprot
Match: A0A6H5JUI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUI4_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.560e-16
Identity = 52/109 (47.71%), Postives = 63/109 (57.80%), Query Frame = 2 
Query:   20 QAMEEASLIRLTGSLLLIAENVVIESRCRFSPETVLLWTRQVRELGGYFKRDGRGVRERKWILNEEDLKMELIGWLKAQKRVTTKKTHEYINNVLLARE-GGILRLAQY 343
            + + EAS  R   SLL IA  V       ++  T+L W R  R  GG FKRD RGV ER WI++EEDLK ELI W++ QKR+T K    YIN  L A E G + RL  Y
Sbjct:  312 EVLIEASRRRHESSLLRIAARVNSAGSRVYAASTILGWLRDFRGHGG-FKRDSRGVHERDWIMSEEDLKDELIKWMRRQKRLTVKDVQNYINQWLFANEIGDLSRLLSY 419
[Close]
BLAST of mRNA_H-elongata_contig7159.14831.1 vs. uniprot
Match: A0A6H5JMT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMT5_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 2.890e-16
Identity = 50/109 (45.87%), Postives = 63/109 (57.80%), Query Frame = 2 
Query:   20 QAMEEASLIRLTGSLLLIAENVVIESRCRFSPETVLLWTRQVRELGGYFKRDGRGVRERKWILNEEDLKMELIGWLKAQKRVTTKKTHEYINNVLLARE-GGILRLAQY 343
            + + EAS +R   SLL IA  V       ++  T+L W R  R  GG  KRD RGV ER WI++EEDLK EL+ W++ QKR+T K    YIN  L A E G + RL  Y
Sbjct:  239 ELLNEASRLRHESSLLRIAARVNSAGSRVYAASTILGWLRDFRGHGGS-KRDSRGVHERDWIMSEEDLKDELVMWMRTQKRLTVKDVQNYINQWLFANEIGDLSRLLSY 346
[Close]
BLAST of mRNA_H-elongata_contig7159.14831.1 vs. uniprot
Match: D8LIV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIV1_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 2.920e-16
Identity = 46/109 (42.20%), Postives = 66/109 (60.55%), Query Frame = 2 
Query:   20 QAMEEASLIRLTGSLLLIAENVVIESRCRFSPETVLLWTRQVRELGGYFKRDGRGVRERKWILNEEDLKMELIGWLKAQKRVTTKKTHEYINNVLLAREG-GILRLAQY 343
            + + EASL+R   SLL IA NVV      ++  T+L W R  R+ GG F+RD RGV E  WI++EEDLK +L+ W++ Q+R+T K   ++IN  L   +   + RL  Y
Sbjct:  284 ELLNEASLVRYDASLLRIAANVVQTGSHPYAVSTILRWLRDFRKQGG-FRRDSRGVHEPDWIMSEEDLKGQLLTWMRTQQRLTVKDVWKFINGSLFEDDAKDLARLLSY 391
[Close]
BLAST of mRNA_H-elongata_contig7159.14831.1 vs. uniprot
Match: A0A6H5JVN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN6_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 4.030e-16
Identity = 51/105 (48.57%), Postives = 61/105 (58.10%), Query Frame = 2 
Query:   32 EASLIRLTGSLLLIAENVVIESRCRFSPETVLLWTRQVRELGGYFKRDGRGVRERKWILNEEDLKMELIGWLKAQKRVTTKKTHEYINNVLLARE-GGILRLAQY 343
            EAS  R   SLL IA  V       ++  T+L W R  R  GG FKRD RGV ER WI++EEDLK +LI W++ QKR+T K    YIN  L A E G + RL  Y
Sbjct:  292 EASRPRHESSLLQIAARVNSAGSRVYAASTILGWLRDFRGHGG-FKRDSRGVHERDWIMSEEDLKDQLIKWMRTQKRLTVKDVQNYINQWLFANEIGDLSRLLSY 395
[Close]
BLAST of mRNA_H-elongata_contig7159.14831.1 vs. uniprot
Match: A0A6H5J4M4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4M4_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 6.710e-15
Identity = 50/109 (45.87%), Postives = 61/109 (55.96%), Query Frame = 2 
Query:   20 QAMEEASLIRLTGSLLLIAENVVIESRCRFSPETVLLWTRQVRELGGYFKRDGRGVRERKWILNEEDLKMELIGWLKAQKRVTTKKTHEYINNVLLARE-GGILRLAQY 343
            + + EA   R   SL  IA  V       ++  T+L W R  R  GG FKRD RGV ER WI++EEDLK ELI W++ QKR+T K    YIN  L A E G + RL  Y
Sbjct:  177 ELLNEALRRRHESSLWRIAARVNSAGLRVYAASTILGWLRDFRGHGG-FKRDSRGVHERDWIMSEEDLKDELIKWMRTQKRLTVKDVQNYINQWLFAYEIGDLSRLLSY 284
[Close]
BLAST of mRNA_H-elongata_contig7159.14831.1 vs. uniprot
Match: A0A6H5JI16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI16_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 8.710e-15
Identity = 49/103 (47.57%), Postives = 59/103 (57.28%), Query Frame = 2 
Query:   20 QAMEEASLIRLTGSLLLIAENVVIESRCRFSPETVLLWTRQVRELGGYFKRDGRGVRERKWILNEEDLKMELIGWLKAQKRVTTKKTHEYINNVLLAREGGIL 328
            + + EAS  R   SLL IA  V       ++  TVL W R  R  GG FKRD R V ER WI+++EDLK ELI W++ QKR+T K    YIN  L A E G L
Sbjct:  197 ELLNEASRRRHESSLLRIAARVNSAGSRVYAASTVLGWLRDFRGHGG-FKRDSRRVHERDWIMSKEDLKDELIKWMRTQKRLTVKDVQNYINQWLFANEIGDL 298
[Close]
BLAST of mRNA_H-elongata_contig7159.14831.1 vs. uniprot
Match: A0A6H5K2T4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T4_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 3.710e-13
Identity = 42/85 (49.41%), Postives = 53/85 (62.35%), Query Frame = 2 
Query:   20 QAMEEASLIRLTGSLLLIAENVVIESRCRFSPETVLLWTRQVRELGGYFKRDGRGVRERKWILNEEDLKMELIGWLKAQKRVTTK 274
            + + EAS +R   SLL IA  V       ++  T+L W R  R  GG FKRD RGV ER WI++EEDLK ELI W++ QKR+T K
Sbjct:  368 ELLNEASRLRHESSLLRIAARVNSAGSRVYAASTILGWLRDFRGHGG-FKRDSRGVHERDWIMSEEDLKDELIKWMRTQKRLTAK 451
[Close]
BLAST of mRNA_H-elongata_contig7159.14831.1 vs. uniprot
Match: A0A6H5KP29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP29_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 2.510e-10
Identity = 33/57 (57.89%), Postives = 38/57 (66.67%), Query Frame = 2 
Query:  158 GYFKRDGRGVRERKWILNEEDLKMELIGWLKAQKRVTTKKTHEYINNVLLAREGGIL 328
            G FKRD RGV  R WI++EEDLK ELI W++ QKR+T K    YIN  L A E G L
Sbjct:   56 GGFKRDSRGVHRRDWIMSEEDLKDELIKWMRTQKRLTVKDVQNYINQWLFASEIGDL 112
[Close]
BLAST of mRNA_H-elongata_contig7159.14831.1 vs. uniprot
Match: A0A6H5JK30_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK30_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.480e-9
Identity = 37/98 (37.76%), Postives = 53/98 (54.08%), Query Frame = 2 
Query:    2 ADEVAKQAMEEASLIRLTGSLLLIAENVVIESRCRFSPETVLLWTRQVRELGGYFKRDGRGVRERKWILNEEDLKMELIGWLKAQKRVTTKKTHEYIN 295
            A++VA +AM+EAS++RL  SLLLIAE    +  C+                             R+WI+ E+DL +  + WLKAQKRVTT+K  ++IN
Sbjct:  155 AEDVATEAMDEASIVRLDNSLLLIAEKSAKDVLCK-----------------------------REWIMTEDDLSLAFLDWLKAQKRVTTQKAWKFIN 223
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7159.14831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JRV8_9PHAE1.540e-1646.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUI4_9PHAE1.560e-1647.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMT5_9PHAE2.890e-1645.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIV1_ECTSI2.920e-1642.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JVN6_9PHAE4.030e-1648.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J4M4_9PHAE6.710e-1545.87Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JI16_9PHAE8.710e-1547.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2T4_9PHAE3.710e-1349.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP29_9PHAE2.510e-1057.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JK30_9PHAE1.480e-937.76Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7159contigH-elongata_contig7159:8456..8798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size344
Cds size318
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931117.2988734-UTR-H-elongata_contig7159:8455..84801622931117.2988734-UTR-H-elongata_contig7159:8455..8480Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7159 8456..8480 +
1691679705.282392-UTR-H-elongata_contig7159:8455..84801691679705.282392-UTR-H-elongata_contig7159:8455..8480Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7159 8456..8480 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931117.3189278-CDS-H-elongata_contig7159:8480..87981622931117.3189278-CDS-H-elongata_contig7159:8480..8798Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7159 8481..8798 +
1691679705.2902882-CDS-H-elongata_contig7159:8480..87981691679705.2902882-CDS-H-elongata_contig7159:8480..8798Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7159 8481..8798 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7159.14831.1prot_H-elongata_contig7159.14831.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7159 8481..8798 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7159.14831.1

>prot_H-elongata_contig7159.14831.1 ID=prot_H-elongata_contig7159.14831.1|Name=mRNA_H-elongata_contig7159.14831.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
MEEASLIRLTGSLLLIAENVVIESRCRFSPETVLLWTRQVRELGGYFKRD
GRGVRERKWILNEEDLKMELIGWLKAQKRVTTKKTHEYINNVLLAREGGI
LRLAQY
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mRNA from alignment at H-elongata_contig7159:8456..8798+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7159.14831.1 ID=mRNA_H-elongata_contig7159.14831.1|Name=mRNA_H-elongata_contig7159.14831.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=343bp|location=Sequence derived from alignment at H-elongata_contig7159:8456..8798+ (Himanthalia elongata Himel1 dioecious)
GGCAGACGAAGTAGCAAAACAGGCCATGGAGGAGGCCTCGCTCATTCGTC
TCACAGGCTCACTTCTGCTGATTGCGGAAAATGTGGTGATCGAGTCGAGG
TGTAGGTTCTCACCGGAGACAGTTCTTTTGTGGACGCGTCAAGTTCGGGA
GCTAGGAGGCTACTTCAAGCGTGACGGCCGAGGTGTGCGCGAGAGGAAGT
GGATCCTGAACGAGGAAGATCTCAAGATGGAGCTGATCGGTTGGCTCAAG
GCCCAAAAGCGTGTCACAACGAAGAAGACCCACGAGTACATCAACAACGT
GCTGCTGGCAAGGGAGGGGGGCATCTTGCGGTTAGCACAGTAT
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Coding sequence (CDS) from alignment at H-elongata_contig7159:8456..8798+

>mRNA_H-elongata_contig7159.14831.1 ID=mRNA_H-elongata_contig7159.14831.1|Name=mRNA_H-elongata_contig7159.14831.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig7159:8456..8798+ (Himanthalia elongata Himel1 dioecious)
ATGGAGGAGGCCTCGCTCATTCGTCTCACAGGCTCACTTCTGCTGATTGC
GGAAAATGTGGTGATCGAGTCGAGGTGTAGGTTCTCACCGGAGACAGTTC
TTTTGTGGACGCGTCAAGTTCGGGAGCTAGGAGGCTACTTCAAGCGTGAC
GGCCGAGGTGTGCGCGAGAGGAAGTGGATCCTGAACGAGGAAGATCTCAA
GATGGAGCTGATCGGTTGGCTCAAGGCCCAAAAGCGTGTCACAACGAAGA
AGACCCACGAGTACATCAACAACGTGCTGCTGGCAAGGGAGGGGGGCATC
TTGCGGTTAGCACAGTATATGGAGGAGGCCTCGCTCATTCGTCTCACAGG
CTCACTTCTGCTGATTGCGGAAAATGTGGTGATCGAGTCGAGGTGTAGGT
TCTCACCGGAGACAGTTCTTTTGTGGACGCGTCAAGTTCGGGAGCTAGGA
GGCTACTTCAAGCGTGACGGCCGAGGTGTGCGCGAGAGGAAGTGGATCCT
GAACGAGGAAGATCTCAAGATGGAGCTGATCGGTTGGCTCAAGGCCCAAA
AGCGTGTCACAACGAAGAAGACCCACGAGTACATCAACAACGTGCTGCTG
GCAAGGGAGGGGGGCATCTTGCGGTTAGCACAGTAT
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