mRNA_H-elongata_contig71571.14828.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig71571.14828.1
Unique Name	mRNA_H-elongata_contig71571.14828.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig71571.14828.1 vs. uniprot
Match: D8LH87_ECTSI (Biotin synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH87_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 1.120e-51
Identity = 80/92 (86.96%), Postives = 87/92 (94.57%), Query Frame = 1

Query:    1 MGESRSMNGIDVAVRNDWTKEEIKEVYDMPMLELLYRASTVHRMFFNPREVQQCTLLSIKTGGCTEDCGYCSQSVRHKTFVKPTPQMQVHSV 276
            MGE+RSMNGID  VRNDWTKEEI+EVY+MPMLELLYRAS+VHRMFF+P EVQQCTLLSIKTGGCTEDCGYCSQSVRHKTFVKPTPQM++  V
Sbjct:   43 MGETRSMNGIDATVRNDWTKEEIREVYEMPMLELLYRASSVHRMFFDPTEVQQCTLLSIKTGGCTEDCGYCSQSVRHKTFVKPTPQMKIDEV 134

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BLAST of mRNA_H-elongata_contig71571.14828.1 vs. uniprot
Match: A0A836CE79_9STRA (Biotin synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE79_9STRA)

HSP 1 Score: 171 bits (434), Expect = 5.170e-51
Identity = 78/92 (84.78%), Postives = 84/92 (91.30%), Query Frame = 1

Query:    1 MGESRSMNGIDVAVRNDWTKEEIKEVYDMPMLELLYRASTVHRMFFNPREVQQCTLLSIKTGGCTEDCGYCSQSVRHKTFVKPTPQMQVHSV 276
            MGE+RS+NG   +VRNDWTKEEI E+Y MPMLELLYRA+TVHRMFFNPREVQQCTLLSIKTGGCTEDC YCSQSVRHKTFVKPTPQM+V  V
Sbjct:    1 MGETRSLNGFTASVRNDWTKEEIAEIYQMPMLELLYRAATVHRMFFNPREVQQCTLLSIKTGGCTEDCSYCSQSVRHKTFVKPTPQMKVQEV 92

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BLAST of mRNA_H-elongata_contig71571.14828.1 vs. uniprot
Match: A0A6V1MT26_HETAK (Biotin synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1MT26_HETAK)

HSP 1 Score: 158 bits (400), Expect = 5.970e-45
Identity = 68/92 (73.91%), Postives = 81/92 (88.04%), Query Frame = 1

Query:    1 MGESRSMNGIDVAVRNDWTKEEIKEVYDMPMLELLYRASTVHRMFFNPREVQQCTLLSIKTGGCTEDCGYCSQSVRHKTFVKPTPQMQVHSV 276
            MGE R +NG+   +RNDWT+EE++++YD+P LELLY ASTVHRMF+NPREVQQCTL+SIKTGGCTEDCGYCSQS +HKT VKPTPQM+V  V
Sbjct:   54 MGEQRELNGVKAIIRNDWTREELQKIYDLPFLELLYTASTVHRMFWNPREVQQCTLISIKTGGCTEDCGYCSQSTKHKTHVKPTPQMKVAEV 145

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BLAST of mRNA_H-elongata_contig71571.14828.1 vs. uniprot
Match: A0A7S2V700_9STRA (Biotin synthase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V700_9STRA)

HSP 1 Score: 157 bits (398), Expect = 9.670e-45
Identity = 68/92 (73.91%), Postives = 81/92 (88.04%), Query Frame = 1

Query:    1 MGESRSMNGIDVAVRNDWTKEEIKEVYDMPMLELLYRASTVHRMFFNPREVQQCTLLSIKTGGCTEDCGYCSQSVRHKTFVKPTPQMQVHSV 276
            MGESR  NG+   VRNDWT+EEI+ +YD+P ++L+YRA+TVHRM+FN REVQQCTL+SIKTGGCTEDCGYCSQS +HKTFVKPTPQM+V  V
Sbjct:   46 MGESREFNGVLAPVRNDWTREEIRSIYDLPFMDLVYRAATVHRMYFNAREVQQCTLISIKTGGCTEDCGYCSQSTKHKTFVKPTPQMKVAEV 137

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BLAST of mRNA_H-elongata_contig71571.14828.1 vs. uniprot
Match: A0A7S4RF80_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RF80_9STRA)

HSP 1 Score: 145 bits (365), Expect = 5.850e-42
Identity = 65/90 (72.22%), Postives = 77/90 (85.56%), Query Frame = 1

Query:    7 ESRSMNGIDVAVRNDWTKEEIKEVYDMPMLELLYRASTVHRMFFNPREVQQCTLLSIKTGGCTEDCGYCSQSVRHKTFVKPTPQMQVHSV 276
            E+R+M GI   VR+DWTKEEI E+Y +P  EL++RA+TVHRM++NP EVQQCTLLSIKTGGCTEDCGYCSQS R+KTFVKPTP M+V  V
Sbjct:   85 ETRTMAGISATVRHDWTKEEIAEIYMLPFHELMHRAATVHRMYWNPSEVQQCTLLSIKTGGCTEDCGYCSQSTRYKTFVKPTPTMKVQQV 174

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BLAST of mRNA_H-elongata_contig71571.14828.1 vs. uniprot
Match: A0A7S0GK47_9STRA (Biotin synthase (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GK47_9STRA)

HSP 1 Score: 149 bits (377), Expect = 6.410e-42
Identity = 68/90 (75.56%), Postives = 77/90 (85.56%), Query Frame = 1

Query:    7 ESRSMNGIDVAVRNDWTKEEIKEVYDMPMLELLYRASTVHRMFFNPREVQQCTLLSIKTGGCTEDCGYCSQSVRHKTFVKPTPQMQVHSV 276
            E RSM GID  +RNDWTK EI E+YD+P  EL+YR++TVHRM++NP EVQQCTLLSIKTGGCTEDC YCSQSVRHKTFVKPTP M+V  V
Sbjct:   95 EIRSMAGIDSELRNDWTKAEIAEIYDLPFHELMYRSATVHRMYWNPAEVQQCTLLSIKTGGCTEDCSYCSQSVRHKTFVKPTPTMKVAEV 184

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BLAST of mRNA_H-elongata_contig71571.14828.1 vs. uniprot
Match: A0A7S2YSA4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YSA4_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.320e-40
Identity = 63/90 (70.00%), Postives = 75/90 (83.33%), Query Frame = 1

Query:    7 ESRSMNGIDVAVRNDWTKEEIKEVYDMPMLELLYRASTVHRMFFNPREVQQCTLLSIKTGGCTEDCGYCSQSVRHKTFVKPTPQMQVHSV 276
            + R M G+   VRNDWTK EI E+Y +P +EL++RAS VHRM+++P EVQQCTLLSIKTGGCTEDCGYCSQSVR+KTFVKPTP M+V  V
Sbjct:   73 DERIMGGVTARVRNDWTKAEIAEIYQLPFVELMHRASMVHRMYWDPSEVQQCTLLSIKTGGCTEDCGYCSQSVRYKTFVKPTPTMKVQEV 162

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BLAST of mRNA_H-elongata_contig71571.14828.1 vs. uniprot
Match: K0SUP7_THAOC (Biotin synthase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SUP7_THAOC)

HSP 1 Score: 146 bits (368), Expect = 4.910e-40
Identity = 66/90 (73.33%), Postives = 75/90 (83.33%), Query Frame = 1

Query:    7 ESRSMNGIDVAVRNDWTKEEIKEVYDMPMLELLYRASTVHRMFFNPREVQQCTLLSIKTGGCTEDCGYCSQSVRHKTFVKPTPQMQVHSV 276
            E+RSM G+   VR+DWTK EI EVY +P  EL+YRASTVHRM+++P EVQQCTLLSIKTGGCTEDC YCSQS RHKTFVKPTP M+V  V
Sbjct:   82 EARSMGGVTATVRHDWTKAEIAEVYTLPFHELMYRASTVHRMYWDPSEVQQCTLLSIKTGGCTEDCSYCSQSTRHKTFVKPTPTMKVQEV 171

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BLAST of mRNA_H-elongata_contig71571.14828.1 vs. uniprot
Match: A0A7S2PJ29_9STRA (Biotin synthase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PJ29_9STRA)

HSP 1 Score: 145 bits (366), Expect = 8.880e-40
Identity = 65/90 (72.22%), Postives = 77/90 (85.56%), Query Frame = 1

Query:    7 ESRSMNGIDVAVRNDWTKEEIKEVYDMPMLELLYRASTVHRMFFNPREVQQCTLLSIKTGGCTEDCGYCSQSVRHKTFVKPTPQMQVHSV 276
            +SRSM G+  +VR++WTKEEI E+Y +P  EL+YRASTVHRM+++P EVQQCTLLSIKTGGCTEDC YCSQS RHKTFVKPTP M+V  V
Sbjct:   77 DSRSMAGVTASVRHNWTKEEIAELYSLPFHELMYRASTVHRMYWDPAEVQQCTLLSIKTGGCTEDCSYCSQSTRHKTFVKPTPTMKVQEV 166

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BLAST of mRNA_H-elongata_contig71571.14828.1 vs. uniprot
Match: A0A7S1Y620_9STRA (Biotin synthase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y620_9STRA)

HSP 1 Score: 145 bits (365), Expect = 1.070e-39
Identity = 63/90 (70.00%), Postives = 77/90 (85.56%), Query Frame = 1

Query:    7 ESRSMNGIDVAVRNDWTKEEIKEVYDMPMLELLYRASTVHRMFFNPREVQQCTLLSIKTGGCTEDCGYCSQSVRHKTFVKPTPQMQVHSV 276
            E+RSM G+   VR+DWT++EI ++Y++P  EL+YRASTVHRM+++P EVQQCTLLSIKTGGCTEDC YCSQS RHKTFVKPTP M+V  V
Sbjct:   73 EARSMGGVTATVRHDWTRQEIADIYNLPYHELMYRASTVHRMYWDPSEVQQCTLLSIKTGGCTEDCSYCSQSTRHKTFVKPTPTMKVQEV 162

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig71571.14828.1 vs. uniprot

BLAST of mRNA_H-elongata_contig71571.14828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LH87_ECTSI	1.120e-51	86.96	Biotin synthase n=2 Tax=Ectocarpus TaxID=2879 RepI...	[more]
A0A836CE79_9STRA	5.170e-51	84.78	Biotin synthase n=1 Tax=Tribonema minus TaxID=3033...	[more]
A0A6V1MT26_HETAK	5.970e-45	73.91	Biotin synthase n=1 Tax=Heterosigma akashiwo TaxID...	[more]
A0A7S2V700_9STRA	9.670e-45	73.91	Biotin synthase n=1 Tax=Fibrocapsa japonica TaxID=...	[more]
A0A7S4RF80_9STRA	5.850e-42	72.22	Hypothetical protein (Fragment) n=1 Tax=Ditylum br...	[more]
A0A7S0GK47_9STRA	6.410e-42	75.56	Biotin synthase (Fragment) n=1 Tax=Proboscia inerm...	[more]
A0A7S2YSA4_9STRA	1.320e-40	70.00	Hypothetical protein (Fragment) n=1 Tax=Amphiprora...	[more]
K0SUP7_THAOC	4.910e-40	73.33	Biotin synthase n=1 Tax=Thalassiosira oceanica Tax...	[more]
A0A7S2PJ29_9STRA	8.880e-40	72.22	Biotin synthase n=1 Tax=Skeletonema marinoi TaxID=...	[more]
A0A7S1Y620_9STRA	1.070e-39	70.00	Biotin synthase n=1 Tax=Grammatophora oceanica Tax...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig71571	contig	H-elongata_contig71571:2467..2945 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	175.3
Seed ortholog evalue	1.4e-41
Seed eggNOG ortholog	2880.D8LH87
Preferred name	BIO2
KEGG rclass	RC00004,RC00041,RC00441
KEGG ko	ko:K01012,ko:K15400
KEGG Reaction	R01078,R09106
KEGG Pathway	ko00073,ko00780,ko01100,map00073,map00780,map01100
KEGG Module	M00123,M00573,M00577
GOs	GO:0003674,GO:0003824,GO:0004076,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009987,GO:0016053,GO:0016740,GO:0016782,GO:0016783,GO:0017144,GO:0018130,GO:0019752,GO:0032787,GO:0034641,GO:0042364,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0070283,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.	biotin synthase activity
EggNOG OGs	COG0502@1,KOG2900@2759
EC	2.3.1.188,2.8.1.6
COG Functional cat.	H
BiGG Reaction	iMM904.YGR286C,iND750.YGR286C
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000
Hectar predicted targeting category	other localisation
Exons	2
Model size	282
Cds size	282
Stop	1
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931116.9658391-CDS-H-elongata_contig71571:2466..2514	1622931116.9658391-CDS-H-elongata_contig71571:2466..2514	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig71571 2467..2514 +
1691679705.1638074-CDS-H-elongata_contig71571:2466..2514	1691679705.1638074-CDS-H-elongata_contig71571:2466..2514	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig71571 2467..2514 +
1622931116.9883232-CDS-H-elongata_contig71571:2711..2945	1622931116.9883232-CDS-H-elongata_contig71571:2711..2945	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig71571 2712..2945 +
1691679705.1768997-CDS-H-elongata_contig71571:2711..2945	1691679705.1768997-CDS-H-elongata_contig71571:2711..2945	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig71571 2712..2945 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig71571.14828.1	prot_H-elongata_contig71571.14828.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig71571 2467..2945 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig71571:2467..2945+
coding sequence from alignment at H-elongata_contig71571:2467..2945+

protein sequence of mRNA_H-elongata_contig71571.14828.1

>prot_H-elongata_contig71571.14828.1 ID=prot_H-elongata_contig71571.14828.1|Name=mRNA_H-elongata_contig71571.14828.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
MGESRSMNGIDVAVRNDWTKEEIKEVYDMPMLELLYRASTVHRMFFNPRE
VQQCTLLSIKTGGCTEDCGYCSQSVRHKTFVKPTPQMQVHSVE*

mRNA from alignment at H-elongata_contig71571:2467..2945+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig71571.14828.1 ID=mRNA_H-elongata_contig71571.14828.1|Name=mRNA_H-elongata_contig71571.14828.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=479bp|location=Sequence derived from alignment at H-elongata_contig71571:2467..2945+ (Himanthalia elongata Himel1 dioecious)
ATGGGAGAGTCGCGGAGCATGAACGGTATCGATGTCGCCGTGCGAAATGT
GCGTATCTCATCCAACACGTCCTACCCCCACAGGAAGTTGTCCAGTATGA
GTACGGTATAATTGTGTGATGTGTTTAGTCTCTCGAGGCCGGAACGGTTA
AGTATGACCTCGCTTGCAGACGATACGGCAGTGAACATTGGCCCTTCTCA
ACCTGTTCCTCGAATCGCCTTGCACTACTGTAATGGCACCGCAAGGACTG
GACGAAAGAAGAGATCAAGGAAGTGTACGACATGCCCATGCTAGAACTGC
TGTACAGGGCATCGACAGTTCACCGCATGTTCTTCAACCCCAGAGAGGTG
CAGCAATGCACGCTCTTGTCTATCAAGACCGGGGGATGCACGGAGGACTG
CGGTTACTGCTCCCAGTCCGTGCGGCACAAGACTTTCGTAAAGCCGACGC
CTCAGATGCAGGTGCATTCAGTCGAATGA

Coding sequence (CDS) from alignment at H-elongata_contig71571:2467..2945+

>mRNA_H-elongata_contig71571.14828.1 ID=mRNA_H-elongata_contig71571.14828.1|Name=mRNA_H-elongata_contig71571.14828.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig71571:2467..2945+ (Himanthalia elongata Himel1 dioecious)
ATGGGAGAGTCGCGGAGCATGAACGGTATCGATGTCGCCGTGCGAAATAT
GGGAGAGTCGCGGAGCATGAACGGTATCGATGTCGCCGTGCGAAATGACT
GGACGAAAGAAGAGATCAAGGAAGTGTACGACATGCCCATGCTAGAACTG
CTGTACAGGGCATCGACAGTTCACCGCATGTTCTTCAACCCCAGAGAGGT
GCAGCAATGCACGCTCTTGTCTATCAAGACCGGGGGATGCACGGAGGACT
GCGGTTACTGCTCCCAGTCCGTGCGGCACAAGACTTTCGTAAAGCCGACG
CCTCAGATGCAGGTGCATTCAGTCGAATGAGACTGGACGAAAGAAGAGAT
CAAGGAAGTGTACGACATGCCCATGCTAGAACTGCTGTACAGGGCATCGA
CAGTTCACCGCATGTTCTTCAACCCCAGAGAGGTGCAGCAATGCACGCTC
TTGTCTATCAAGACCGGGGGATGCACGGAGGACTGCGGTTACTGCTCCCA
GTCCGTGCGGCACAAGACTTTCGTAAAGCCGACGCCTCAGATGCAGGTGC
ATTCAGTCGAATGA