mRNA_H-elongata_contig71557.14824.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71557.14824.1
Unique NamemRNA_H-elongata_contig71557.14824.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig71557.14824.1 vs. uniprot
Match: A0A6H5K7A1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7A1_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.060e-9
Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 3 
Query:  351 VTHYLDGHTSNVTLDVLKFALANNIDLLFQLPSHSSYVTQPLDVYAFGIVKRNITTALT 527
            V+  LDGH S+ T D +  A++ +IDL FQLPSH+S++TQPLDV  FGI K+ +T  LT
Sbjct:  115 VSLVLDGHASHTTFDAISLAISLDIDL-FQLPSHTSHITQPLDVGTFGIFKKELTRVLT 172
[Close]
BLAST of mRNA_H-elongata_contig71557.14824.1 vs. uniprot
Match: A0A6H5J7V6_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7V6_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.140e-9
Identity = 29/51 (56.86%), Postives = 41/51 (80.39%), Query Frame = 3 
Query:  363 LDGHTSNVTLDVLKFALANNIDLLFQLPSHSSYVTQPLDVYAFGIVKRNIT 515
            LDGH S+++ +V+K A+  NI +LFQLPSH+S++TQPLDV AFG  K+ +T
Sbjct:    2 LDGHASHMSYEVIKLAMELNI-ILFQLPSHTSHITQPLDVVAFGTFKKEVT 51
[Close]
BLAST of mRNA_H-elongata_contig71557.14824.1 vs. uniprot
Match: A0A6H5JV04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV04_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 6.090e-9
Identity = 32/61 (52.46%), Postives = 47/61 (77.05%), Query Frame = 3 
Query:  363 LDGHTSNVTLDVLKFALANNIDLLFQLPSHSSYVTQPLDVYAFGIVKRNITTALTTRSRLT 545
            LDGH S+V+++V++ A+  NI +LFQLPSH+S++TQPLDV AFG  KR +T  L+   R++
Sbjct:  280 LDGHASHVSVEVIQLAMELNI-VLFQLPSHTSHITQPLDVVAFGAFKREVTKVLSDYYRVS 339
[Close]
BLAST of mRNA_H-elongata_contig71557.14824.1 vs. uniprot
Match: A0A6H5JJ12_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ12_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 6.670e-9
Identity = 32/61 (52.46%), Postives = 47/61 (77.05%), Query Frame = 3 
Query:  363 LDGHTSNVTLDVLKFALANNIDLLFQLPSHSSYVTQPLDVYAFGIVKRNITTALTTRSRLT 545
            LDGH S+V+++V++ A+  NI +LFQLPSH+S++TQPLDV AFG  KR +T  L+   R++
Sbjct:  521 LDGHASHVSVEVIQLAMELNI-VLFQLPSHTSHITQPLDVVAFGAFKREVTKVLSDYYRVS 580
[Close]
BLAST of mRNA_H-elongata_contig71557.14824.1 vs. uniprot
Match: A0A6H5JBS6_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBS6_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 9.110e-9
Identity = 32/57 (56.14%), Postives = 43/57 (75.44%), Query Frame = 3 
Query:  354 THYLDGHTSNVTLDVLKFALANNIDLLFQLPSHSSYVTQPLDVYAFGIVKRNITTAL 524
            T  LDGH S+V+ +V+K A+  NI +LFQLPSH+S++TQPLDV AFG  K+ +T  L
Sbjct:  273 TLVLDGHASHVSYEVIKLAMELNI-ILFQLPSHTSHITQPLDVVAFGTFKKEVTKVL 328
[Close]
BLAST of mRNA_H-elongata_contig71557.14824.1 vs. uniprot
Match: A0A6H5JE68_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE68_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.330e-8
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 3 
Query:  363 LDGHTSNVTLDVLKFALANNIDLLFQLPSHSSYVTQPLDVYAFGIVKRNITTAL 524
            LDGH S+V+ +V+K A+  NI +LFQLPSH+S++TQPLDV AFG  K+ +T  L
Sbjct:  277 LDGHASHVSYEVIKLAMEVNI-ILFQLPSHTSHITQPLDVVAFGTFKKEVTKVL 329
[Close]
BLAST of mRNA_H-elongata_contig71557.14824.1 vs. uniprot
Match: A0A6H5JRL2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL2_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.800e-8
Identity = 43/116 (37.07%), Postives = 60/116 (51.72%), Query Frame = 3 
Query:  183 QIYRGSLSLPLNSKSGG--DLVRHHLFCRQICFFMSVATILSSLGHRCKKTFAKWAMMVTHYLDGHTSNVTLDVLKFALANNIDLLFQLPSHSSYVTQPLDVYAFGIVKRNITTAL 524
            Q + G     LN   G   D       C ++ F   +      LG R      K  ++V   LDGHTS+V+LDV+K  ++ NI L+ QLPSH S++TQPLDV  FG  K+ + T +
Sbjct:   84 QRFNGDWVADLNGPPGAFNDCTESSFMCGEV-FIKYIKNFHKQLGDR-NLLDGKPHVLV---LDGHTSHVSLDVIKLVISLNIHLV-QLPSHMSHITQPLDVAGFGCFKKELATVI 193
[Close]
BLAST of mRNA_H-elongata_contig71557.14824.1 vs. uniprot
Match: A0A6H5JUK8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK8_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.880e-8
Identity = 32/55 (58.18%), Postives = 40/55 (72.73%), Query Frame = 3 
Query:  363 LDGHTSNVTLDVLKFALANNIDLLFQLPSHSSYVTQPLDVYAFGIVKRNITTALT 527
            LDGH S+ T D +  AL+ +ID  FQLPSH+S++TQPLDV  FGI K+ IT  LT
Sbjct:  319 LDGHASHTTFDAISLALSLDIDA-FQLPSHTSHITQPLDVGTFGIFKKEITKVLT 372
[Close]
BLAST of mRNA_H-elongata_contig71557.14824.1 vs. uniprot
Match: A0A6H5JW64_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW64_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 2.370e-8
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 3 
Query:  366 DGHTSNVTLDVLKFALANNIDLLFQLPSHSSYVTQPLDVYAFGIVKRNITTALT 527
            DGH S+ T D +  A++ +IDL FQLPSH+S++TQPLDV  FG  K+ +T  LT
Sbjct:   55 DGHASHTTFDAISLAISLDIDL-FQLPSHTSHITQPLDVGTFGTFKKELTGVLT 107
[Close]
BLAST of mRNA_H-elongata_contig71557.14824.1 vs. uniprot
Match: A0A6H5L7K7_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7K7_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 2.540e-8
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 3 
Query:  363 LDGHTSNVTLDVLKFALANNIDLLFQLPSHSSYVTQPLDVYAFGIVKRNITTAL 524
            LDGH S+ T D + FA+  +IDL FQLPSH+S++TQPLDV  FG  KR +T  L
Sbjct:  245 LDGHASHTTFDAISFAIPLDIDL-FQLPSHTSHITQPLDVGTFGAFKRELTRVL 297
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71557.14824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K7A1_9PHAE1.060e-954.24DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5J7V6_9PHAE1.140e-956.86DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JV04_9PHAE6.090e-952.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJ12_9PHAE6.670e-952.46Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JBS6_9PHAE9.110e-956.14DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JE68_9PHAE1.330e-857.41DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JRL2_9PHAE1.800e-837.07DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JUK8_9PHAE1.880e-858.18Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JW64_9PHAE2.370e-853.70DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L7K7_9PHAE2.540e-857.41DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71557contigH-elongata_contig71557:1254..2172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size801
Cds size519
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71557.14824.1prot_H-elongata_contig71557.14824.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71557 1289..1807 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931116.680383-UTR-H-elongata_contig71557:1253..12881622931116.680383-UTR-H-elongata_contig71557:1253..1288Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71557 1254..1288 +
1691679705.0561728-UTR-H-elongata_contig71557:1253..12881691679705.0561728-UTR-H-elongata_contig71557:1253..1288Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71557 1254..1288 +
1622931116.7095134-UTR-H-elongata_contig71557:1807..18251622931116.7095134-UTR-H-elongata_contig71557:1807..1825Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71557 1808..1825 +
1691679705.0825481-UTR-H-elongata_contig71557:1807..18251691679705.0825481-UTR-H-elongata_contig71557:1807..1825Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71557 1808..1825 +
1622931116.7215595-UTR-H-elongata_contig71557:1943..21721622931116.7215595-UTR-H-elongata_contig71557:1943..2172Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71557 1944..2172 +
1691679705.0925074-UTR-H-elongata_contig71557:1943..21721691679705.0925074-UTR-H-elongata_contig71557:1943..2172Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71557 1944..2172 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931116.694226-CDS-H-elongata_contig71557:1288..18071622931116.694226-CDS-H-elongata_contig71557:1288..1807Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71557 1289..1807 +
1691679705.0715387-CDS-H-elongata_contig71557:1288..18071691679705.0715387-CDS-H-elongata_contig71557:1288..1807Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71557 1289..1807 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71557.14824.1

>prot_H-elongata_contig71557.14824.1 ID=prot_H-elongata_contig71557.14824.1|Name=mRNA_H-elongata_contig71557.14824.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=173bp
MLATVLTSPTVAMYFNLKLHHSAPGYRRRKAGDGDKTVRRVTRLSGMLLQ
IYRGSLSLPLNSKSGGDLVRHHLFCRQICFFMSVATILSSLGHRCKKTFA
KWAMMVTHYLDGHTSNVTLDVLKFALANNIDLLFQLPSHSSYVTQPLDVY
AFGIVKRNITTALTTRSRLTAI*
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mRNA from alignment at H-elongata_contig71557:1254..2172+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71557.14824.1 ID=mRNA_H-elongata_contig71557.14824.1|Name=mRNA_H-elongata_contig71557.14824.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=919bp|location=Sequence derived from alignment at H-elongata_contig71557:1254..2172+ (Himanthalia elongata Himel1 dioecious)
ATTGTCGTTTGCGACATTTTGTGCAATAATTGTCCATGTTGGCCACGGTC
CTTACCAGCCCGACCGTAGCCATGTATTTCAATCTGAAGCTTCACCATTC
CGCGCCAGGATATCGACGCAGAAAAGCGGGCGATGGTGACAAGACTGTCA
GGAGGGTGACGAGACTGTCAGGAATGCTCCTCCAAATTTATCGGGGTTCT
CTGTCTTTACCTTTGAACAGTAAAAGCGGTGGTGACCTGGTCCGGCATCA
TCTGTTCTGCCGACAAATCTGCTTCTTTATGTCGGTAGCCACTATATTGT
CATCACTAGGCCACAGATGCAAGAAAACGTTCGCAAAATGGGCAATGATG
GTCACGCACTACCTTGACGGACACACGTCGAATGTGACCCTCGATGTGCT
GAAGTTCGCTCTGGCCAACAACATTGATCTGTTGTTCCAGCTACCATCGC
ATTCCTCCTACGTAACTCAGCCCTTAGACGTCTACGCCTTCGGCATCGTC
AAGCGCAACATAACTACCGCCCTGACAACGCGGTCCCGGCTCACAGCGAT
ATGAAGATGCCCGTGAAGAGCGACATGGCCAGCATCGTGCGCGAAGAGTG
TGGGACCGATCCTTCACTCCGCGAAACGTCATGACCTTGTTTGCTGGGGC
AGGTATTGTCCCCCCTTGACAAAGACAAGGCTATGAAATTGTTCAACGGC
CAGGGAACAAAATACAAGGAGCTGCTGTTTGATCATCCGTATCTGGTCGA
TCTTCCGCTGCTCATCAACAACGATGATCACATCATCGGCGAAAATCTGC
CAGCCGCGCAGCTCCGGGATCGGGGTTACACCATCACTGGTTTTAGGACT
AAGGGCCGGTTTATACGGACGAAATAAATTCAATATTTTTGAATTGGTCA
ATAAAATTGATTTTCATGT
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Coding sequence (CDS) from alignment at H-elongata_contig71557:1254..2172+

>mRNA_H-elongata_contig71557.14824.1 ID=mRNA_H-elongata_contig71557.14824.1|Name=mRNA_H-elongata_contig71557.14824.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1038bp|location=Sequence derived from alignment at H-elongata_contig71557:1254..2172+ (Himanthalia elongata Himel1 dioecious)
ATGTTGGCCACGGTCCTTACCAGCCCGACCGTAGCCATGTATTTCAATCT
GAAGCTTCACCATTCCGCGCCAGGATATCGACGCAGAAAAGCGGGCGATG
GTGACAAGACTGTCAGGAGGGTGACGAGACTGTCAGGAATGCTCCTCCAA
ATTTATCGGGGTTCTCTGTCTTTACCTTTGAACAGTAAAAGCGGTGGTGA
CCTGGTCCGGCATCATCTGTTCTGCCGACAAATCTGCTTCTTTATGTCGG
TAGCCACTATATTGTCATCACTAGGCCACAGATGCAAGAAAACGTTCGCA
AAATGGGCAATGATGGTCACGCACTACCTTGACGGACACACGTCGAATGT
GACCCTCGATGTGCTGAAGTTCGCTCTGGCCAACAACATTGATCTGTTGT
TCCAGCTACCATCGCATTCCTCCTACGTAACTCAGCCCTTAGACGTCTAC
GCCTTCGGCATCGTCAAGCGCAACATAACTACCGCCCTGACAACGCGGTC
CCGGCTCACAGCGATATGAATGTTGGCCACGGTCCTTACCAGCCCGACCG
TAGCCATGTATTTCAATCTGAAGCTTCACCATTCCGCGCCAGGATATCGA
CGCAGAAAAGCGGGCGATGGTGACAAGACTGTCAGGAGGGTGACGAGACT
GTCAGGAATGCTCCTCCAAATTTATCGGGGTTCTCTGTCTTTACCTTTGA
ACAGTAAAAGCGGTGGTGACCTGGTCCGGCATCATCTGTTCTGCCGACAA
ATCTGCTTCTTTATGTCGGTAGCCACTATATTGTCATCACTAGGCCACAG
ATGCAAGAAAACGTTCGCAAAATGGGCAATGATGGTCACGCACTACCTTG
ACGGACACACGTCGAATGTGACCCTCGATGTGCTGAAGTTCGCTCTGGCC
AACAACATTGATCTGTTGTTCCAGCTACCATCGCATTCCTCCTACGTAAC
TCAGCCCTTAGACGTCTACGCCTTCGGCATCGTCAAGCGCAACATAACTA
CCGCCCTGACAACGCGGTCCCGGCTCACAGCGATATGA
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