mRNA_H-elongata_contig71524.14818.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71524.14818.1
Unique NamemRNA_H-elongata_contig71524.14818.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig71524.14818.1 vs. uniprot
Match: A0A6H5KNF2_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNF2_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 3.490e-57
Identity = 85/124 (68.55%), Postives = 100/124 (80.65%), Query Frame = 1
Query:    4 ICDAQYRIIAWTMNCPGSHNDRTAFNFSGFHKLLDGLPPGYFILGDAAYPPSDRVLVPYPGTELPNSQDVYSYYQFQCRMAIEQTFRILVETWGILWRPMEVHQPRFTQVVNYVIRLDNFCRNR 375
            +CDAQYRI+AWTM+CPGS NDRTAFNF+ F KLL GLP G+F++GDAAY  S+RV+VP+PGT L  SQD  +YY  QCRMAIEQT+ ILV  WGILWRPMEV   +F  VVN V+RL NFCR+R
Sbjct:   61 VCDAQYRIVAWTMSCPGSQNDRTAFNFAWFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGILVRRWGILWRPMEVRIEKFEHVVNAVVRLHNFCRDR 184          
BLAST of mRNA_H-elongata_contig71524.14818.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 1.250e-56
Identity = 87/124 (70.16%), Postives = 100/124 (80.65%), Query Frame = 1
Query:    4 ICDAQYRIIAWTMNCPGSHNDRTAFNFSGFHKLLDGLPPGYFILGDAAYPPSDRVLVPYPGTELPNSQDVYSYYQFQCRMAIEQTFRILVETWGILWRPMEVHQPRFTQVVNYVIRLDNFCRNR 375
            +CDAQYRI+AW MNCPGS NDRTAFNFSGF KLL GLP G+F++GDAAY  S+RV+VP+PGT L  SQD  +YY  QCRMAIEQT+ ILV  WGILWRPMEV   +F  VVN V+RL NFCR+R
Sbjct:  213 VCDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGILVRRWGILWRPMEVRIEKFEHVVNAVVRLHNFCRDR 336          
BLAST of mRNA_H-elongata_contig71524.14818.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 4.620e-50
Identity = 78/125 (62.40%), Postives = 97/125 (77.60%), Query Frame = 1
Query:    1 GICDAQYRIIAWTMNCPGSHNDRTAFNFSGFHKLLDGLPPGYFILGDAAYPPSDRVLVPYPGTELPNSQDVYSYYQFQCRMAIEQTFRILVETWGILWRPMEVHQPRFTQVVNYVIRLDNFCRNR 375
            G+C+A+Y IIAWTMNCPGS NDRTAF  S F  +L  LPPG +I+GDAAYP SD+VLVPYPGT L  SQD Y++YQ Q R++IEQ F I+V+TWGILWRP+++   R + V+N V+RL NF R R
Sbjct:  219 GVCNARYEIIAWTMNCPGSCNDRTAFKHSVFGTVLKTLPPGAYIVGDAAYPASDQVLVPYPGTSLTRSQDAYNFYQSQARISIEQAFGIMVKTWGILWRPLDMRLERVSSVINSVVRLHNFLRRR 343          
BLAST of mRNA_H-elongata_contig71524.14818.1 vs. uniprot
Match: A0A6H5KCG0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG0_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 1.090e-46
Identity = 74/122 (60.66%), Postives = 93/122 (76.23%), Query Frame = 1
Query:    4 ICDAQYRIIAWTMNCPGSHNDRTAFNFSGFHKLLDGLPPGYFILGDAAYPPSDRVLVPYPGTELPNSQDVYSYYQFQCRMAIEQTFRILVETWGILWRPMEVHQPRFTQVVNYVIRLDNFCR 369
            +C+A+Y+I AWTMNCPGS NDRTAF  SGF ++L  LP G +I+GD AYP SD+VLVPYPGT L  SQD Y++YQ Q R+ IEQ F  +V+TWGILWRP++V   R + V+N V+RL NF R
Sbjct:  154 VCNARYKITAWTMNCPGSCNDRTAFKHSGFERVLKTLPKGAYIVGDGAYPASDQVLVPYPGTTLTPSQDSYNFYQSQARIFIEQAFGNMVKTWGILWRPLQVKLGRVSSVMNAVVRLHNFLR 275          
BLAST of mRNA_H-elongata_contig71524.14818.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 1.950e-46
Identity = 76/125 (60.80%), Postives = 91/125 (72.80%), Query Frame = 1
Query:    1 GICDAQYRIIAWTMNCPGSHNDRTAFNFSGFHKLLDGLPPGYFILGDAAYPPSDRVLVPYPGTELPNSQDVYSYYQFQCRMAIEQTFRILVETWGILWRPMEVHQPRFTQVVNYVIRLDNFCRNR 375
            GIC+A Y II WTMNCPGS NDRTAF  SGF  LL  +PP  FI+GDAAYP S+RVLVP PGT L  SQD Y++YQ Q R++IEQ F ILV+TW ILW+P+ +   R   V+N ++RL NF R R
Sbjct:  223 GICNASYEIITWTMNCPGSQNDRTAFKHSGFDALLSKMPPDCFIVGDAAYPASNRVLVPDPGTALTLSQDAYNFYQSQARISIEQAFGILVKTWEILWKPLAIRLDRVGHVMNAIVRLHNFLRRR 347          
BLAST of mRNA_H-elongata_contig71524.14818.1 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 1.260e-45
Identity = 78/124 (62.90%), Postives = 92/124 (74.19%), Query Frame = 1
Query:    4 ICDAQYRIIAWTMNCPGSHNDRTAFNFSGFHKLLDGLPPGYFILGDAAYPPSDRVLVPYPGTELPNSQDVYSYYQFQCRMAIEQTFRILVETWGILWRPMEVHQPRFTQVVNYVIRLDNFCRNR 375
            +CDAQYRI+AW MNCPGS NDRTAFNFSGF KLL GLP G+F++GDAAY  S+RV+VP+PGT L  SQD  +YY  QCRMAIEQT+ ILV   G+    +E        VVN V+RL NFCR+R
Sbjct:  142 VCDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYMSQCRMAIEQTYGILVSVVGMAKVVVE-------HVVNAVVRLHNFCRDR 258          
BLAST of mRNA_H-elongata_contig71524.14818.1 vs. uniprot
Match: A0A6H5KLK3_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLK3_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.920e-31
Identity = 56/121 (46.28%), Postives = 74/121 (61.16%), Query Frame = 1
Query:    7 CDAQYRIIAWTMNCPGSHNDRTAFNFSGFHKLLDGLPPGYFILGDAAYPPSDRVLVPYPGTELPNSQDVYSYYQFQCRMAIEQTFRILVETWGILWRPMEVHQPRFTQVVNYVIRLDNFCR 369
            CDA YR  + +   PGS ND TA+N S     +  LPPG+++LGDAAYP SD +L PYPG  LP  +D +++Y  Q R+ IEQ F ILV  WGILW+P+ V        +  + RL N+ R
Sbjct:    7 CDANYRFCSMSCIAPGSTNDWTAWNHSDLSTAVQNLPPGFYMLGDAAYPLSDHLLTPYPGRGLPLDKDAFNFYLSQLRVRIEQAFGILVGQWGILWKPLRVQFAGRCDFITALFRLHNYLR 127          
BLAST of mRNA_H-elongata_contig71524.14818.1 vs. uniprot
Match: A0A6H5KQ54_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ54_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 3.350e-31
Identity = 57/121 (47.11%), Postives = 75/121 (61.98%), Query Frame = 1
Query:    7 CDAQYRIIAWTMNCPGSHNDRTAFNFSGFHKLLDGLPPGYFILGDAAYPPSDRVLVPYPGTELPNSQDVYSYYQFQCRMAIEQTFRILVETWGILWRPMEVHQPRFTQVVNYVIRLDNFCR 369
            CDA YR  + +   PGS ND TA+N S     +  LPPG+++LGDAAYP SD +L PYPG  LP  +D +++Y  Q R+ IEQ F ILV  WGILW+P+ V       ++  + RL NF R
Sbjct:   61 CDANYRFCSMSCIAPGSTNDWTAWNHSDLSTAVKNLPPGFYMLGDAAYPLSDHLLTPYPGRGLPLDKDAFNFYLSQLRVRIEQAFGILVGQWGILWKPLRVQFAGRCDLITALFRLHNFLR 181          
BLAST of mRNA_H-elongata_contig71524.14818.1 vs. uniprot
Match: A0A6H5JUE6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUE6_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 3.310e-30
Identity = 58/121 (47.93%), Postives = 77/121 (63.64%), Query Frame = 1
Query:    7 CDAQYRIIAWTMNCPGSHNDRTAFNFSGFHKLLDGLPPGYFILGDAAYPPSDRVLVPYPGTELPNSQDVYSYYQFQCRMAIEQTFRILVETWGILWRPMEVHQPRFTQVVNYVIRLDNFCR 369
            CDA YR  + +    G+ ND TA+N S   + +  LPPGY++LGDAAYP SD++L PYPG  LP  QD Y++Y  Q R+ IEQ F ILV  WGILWRP+ V     + ++  + RL N+ R
Sbjct:  246 CDANYRFCSMSAISAGATNDWTAWNRSELSRAVARLPPGYYMLGDAAYPLSDQLLTPYPGKLLPRDQDAYNFYLSQLRVKIEQAFGILVGQWGILWRPLRVQFAGRSALITALFRLHNYLR 366          
BLAST of mRNA_H-elongata_contig71524.14818.1 vs. uniprot
Match: A0A6H5JV75_9PHAE (DDE Tnp4 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV75_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 4.930e-30
Identity = 57/121 (47.11%), Postives = 75/121 (61.98%), Query Frame = 1
Query:    7 CDAQYRIIAWTMNCPGSHNDRTAFNFSGFHKLLDGLPPGYFILGDAAYPPSDRVLVPYPGTELPNSQDVYSYYQFQCRMAIEQTFRILVETWGILWRPMEVHQPRFTQVVNYVIRLDNFCR 369
            CDA YR  + +   PGS ND TA+N S     +  LPPG+++LGDAAYP SD +L PYPG  LP  +D +++Y  Q R+ IEQ F ILV  WGILW+P+ V       ++  + RL NF R
Sbjct:  249 CDANYRFCSMSCIAPGSTNDWTAWNHSDLSTAVKNLPPGFYMLGDAAYPLSDHLLTPYPGRGLPLDKDAFNFYLSQLRVRIEQAFGILVGQWGILWKPLRVQFAGRCDLITALFRLHNFLR 369          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71524.14818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNF2_9PHAE3.490e-5768.55DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5L6B6_9PHAE1.250e-5670.16DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5K3F2_9PHAE4.620e-5062.40DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KCG0_9PHAE1.090e-4660.66DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K6M2_9PHAE1.950e-4660.80DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K540_9PHAE1.260e-4562.90DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KLK3_9PHAE1.920e-3146.28DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5KQ54_9PHAE3.350e-3147.11DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JUE6_9PHAE3.310e-3047.93DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5JV75_9PHAE4.930e-3047.11DDE Tnp4 domain-containing protein n=4 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71524contigH-elongata_contig71524:2044..2774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score83.6
Seed ortholog evalue7.4e-14
Seed eggNOG ortholog7159.AAEL018005-PB
EggNOG free text desc.DDE superfamily endonuclease
EggNOG OGs39THK@33154,3BGF1@33208,3D09T@33213,3SIRQ@50557,41Z3Y@6656,453W1@7147,45JC4@7148,KOG4585@1,KOG4585@2759
COG Functional cat.L
Best tax levelNematocera
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size378
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931116.1988254-CDS-H-elongata_contig71524:2043..23131622931116.1988254-CDS-H-elongata_contig71524:2043..2313Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71524 2044..2313 +
1691679704.8912954-CDS-H-elongata_contig71524:2043..23131691679704.8912954-CDS-H-elongata_contig71524:2043..2313Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71524 2044..2313 +
1622931116.2352948-CDS-H-elongata_contig71524:2666..27741622931116.2352948-CDS-H-elongata_contig71524:2666..2774Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71524 2667..2774 +
1691679704.902584-CDS-H-elongata_contig71524:2666..27741691679704.902584-CDS-H-elongata_contig71524:2666..2774Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71524 2667..2774 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71524.14818.1prot_H-elongata_contig71524.14818.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71524 2044..2774 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71524.14818.1

>prot_H-elongata_contig71524.14818.1 ID=prot_H-elongata_contig71524.14818.1|Name=mRNA_H-elongata_contig71524.14818.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
GICDAQYRIIAWTMNCPGSHNDRTAFNFSGFHKLLDGLPPGYFILGDAAY
PPSDRVLVPYPGTELPNSQDVYSYYQFQCRMAIEQTFRILVETWGILWRP
MEVHQPRFTQVVNYVIRLDNFCRNRN
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mRNA from alignment at H-elongata_contig71524:2044..2774+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71524.14818.1 ID=mRNA_H-elongata_contig71524.14818.1|Name=mRNA_H-elongata_contig71524.14818.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=731bp|location=Sequence derived from alignment at H-elongata_contig71524:2044..2774+ (Himanthalia elongata Himel1 dioecious)
GGTATTTGCGATGCTCAATATCGAATCATCGCATGGACCATGAACTGCCC CGGAAGCCATAATGATCGGACAGCCTTCAACTTTTCTGGGTTCCACAAGC TCCTAGACGGTCTTCCTCCTGGCTACTTCATTCTCGGGGACGCAGCGTAT CCGCCTTCCGACCGTGTGCTCGTACCTTACCCTGGGACCGAGCTGCCCAA CAGCCAGGACGTATACAGTTACTACCAATTTCAATGCAGGATGGCTATCG AGCAGACGTTCAGGATTCTAGTGAGTTTTGACGCGGTTTTCCTGTTGTCA AAGTTTGGGACTTTTTTTGTCCATGAGAAGGTACTATGTGGCTGCTGGTT GTCAAGTATCAATTCATTGGCGAACAAACAAAACCCATCTTGCTCACCAC TAAATTGCGCATGAAAACAAAAATGGTGGAGGTTTGTATATTCCTCGTAT TCACTGATTATCTTTGCCTAACTGGTCATCTACGGTCGCCTGTAATTTAC CGCTTTCAAGAAGTTTATTTTCGCCGTGAATGAATGTAAAAATAGACCTG CGACACGAAGACTAACAAGCATATCACATTTTATTTTGTCCATATAATAC CTGCGCAAACATAATATTATTAGGTGGAGACTTGGGGGATTCTCTGGCGT CCCATGGAGGTACACCAACCACGGTTTACCCAAGTAGTGAATTATGTCAT CCGGTTAGACAACTTCTGCCGAAATCGAAAC
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Coding sequence (CDS) from alignment at H-elongata_contig71524:2044..2774+

>mRNA_H-elongata_contig71524.14818.1 ID=mRNA_H-elongata_contig71524.14818.1|Name=mRNA_H-elongata_contig71524.14818.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at H-elongata_contig71524:2044..2774+ (Himanthalia elongata Himel1 dioecious)
GGTATTTGCGATGCTCAATATCGAATCATCGCATGGACCATGAACTGCCC
CGGAAGCCATAATGATCGGACAGCCTTCAACTTTTCTGGGTTCCACAAGC
TCCTAGACGGTCTTCCTCCTGGCTACTTCATTCTCGGGGACGCAGCGTAT
CCGCCTTCCGACCGTGTGCTCGTACCTTACCCTGGGACCGAGCTGCCCAA
CAGCCAGGACGTATACAGTTACTACCAATTTCAATGCAGGATGGCTATCG
AGCAGACGTTCAGGATTCTAGGTATTTGCGATGCTCAATATCGAATCATC
GCATGGACCATGAACTGCCCCGGAAGCCATAATGATCGGACAGCCTTCAA
CTTTTCTGGGTTCCACAAGCTCCTAGACGGTCTTCCTCCTGGCTACTTCA
TTCTCGGGGACGCAGCGTATCCGCCTTCCGACCGTGTGCTCGTACCTTAC
CCTGGGACCGAGCTGCCCAACAGCCAGGACGTATACAGTTACTACCAATT
TCAATGCAGGATGGCTATCGAGCAGACGTTCAGGATTCTAGTGGAGACTT
GGGGGATTCTCTGGCGTCCCATGGAGGTACACCAACCACGGTTTACCCAA
GTAGTGAATTATGTCATCCGGTTAGACAACTTCTGCCGAAATCGAAACGT
GGAGACTTGGGGGATTCTCTGGCGTCCCATGGAGGTACACCAACCACGGT
TTACCCAAGTAGTGAATTATGTCATCCGGTTAGACAACTTCTGCCGAAAT
CGAAAC
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