mRNA_H-elongata_contig71520.14815.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71520.14815.1
Unique NamemRNA_H-elongata_contig71520.14815.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig71520.14815.1 vs. uniprot
Match: D7FK16_ECTSI (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK16_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 3.810e-36
Identity = 63/69 (91.30%), Postives = 68/69 (98.55%), Query Frame = 1 
Query:    1 QDGYFEKDRIPKGDPGKREFTYFMLGSARFLYASTARLILLKFLASWEPAADVMALATAEFDLKDIEMG 207
            QDGYFEKDR+ KGDPGKREFTYFMLG++RFLYAS+ARLILLKFLASWEPAADVMALATAEF+LKDIEMG
Sbjct:   71 QDGYFEKDRVAKGDPGKREFTYFMLGASRFLYASSARLILLKFLASWEPAADVMALATAEFELKDIEMG 139
[Close]
BLAST of mRNA_H-elongata_contig71520.14815.1 vs. uniprot
Match: A0A2D4CB52_PYTIN (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4CB52_PYTIN)

HSP 1 Score: 89.4 bits (220), Expect = 2.020e-20
Identity = 44/68 (64.71%), Postives = 52/68 (76.47%), Query Frame = 1 
Query:    4 DGYFEKDRIPKGDPGKREFTYFMLGSARFLYASTARLILLKFLASWEPAADVMALATAEFDLKDIEMG 207
            D YFEKDRI  GDP KR FTYFMLG AR  YA+ ARL ++KF+ S   +ADV+ALATAEFDL +I+ G
Sbjct:   41 DHYFEKDRIASGDPSKRAFTYFMLGGARVAYATAARLAVIKFVGSMSASADVLALATAEFDLSNIDEG 108
[Close]
BLAST of mRNA_H-elongata_contig71520.14815.1 vs. uniprot
Match: A0A2P4YJR4_9STRA (Cytochrome b-c1 complex subunit Rieske (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YJR4_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.600e-20
Identity = 44/68 (64.71%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:    4 DGYFEKDRIPKGDPGKREFTYFMLGSARFLYASTARLILLKFLASWEPAADVMALATAEFDLKDIEMG 207
            D YFEKDRI  GDP KR FTYFMLG AR  YA+ ARL ++KF+ S   +ADV+ALATAEFDL +I  G
Sbjct:   37 DHYFEKDRIDAGDPSKRAFTYFMLGGARVAYATAARLAVVKFVGSMSASADVLALATAEFDLSNINEG 104
[Close]
BLAST of mRNA_H-elongata_contig71520.14815.1 vs. uniprot
Match: H3GII1_PHYRM (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=13 Tax=Peronosporaceae TaxID=4777 RepID=H3GII1_PHYRM)

HSP 1 Score: 87.8 bits (216), Expect = 7.330e-20
Identity = 44/68 (64.71%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:    4 DGYFEKDRIPKGDPGKREFTYFMLGSARFLYASTARLILLKFLASWEPAADVMALATAEFDLKDIEMG 207
            D YFEKDRI  GDP KR FTYFMLG AR  YA+ ARL ++KF+ S   +ADV+ALATAEFDL +I  G
Sbjct:   37 DHYFEKDRIDAGDPSKRAFTYFMLGGARVAYATAARLAVVKFVGSMSASADVLALATAEFDLSNINEG 104
[Close]
BLAST of mRNA_H-elongata_contig71520.14815.1 vs. uniprot
Match: W7TQL4_9STRA (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQL4_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 9.840e-20
Identity = 42/70 (60.00%), Postives = 56/70 (80.00%), Query Frame = 1 
Query:    4 DGYFEKDRIPK--GDPGKREFTYFMLGSARFLYASTARLILLKFLASWEPAADVMALATAEFDLKDIEMG 207
            D Y+EKD++ K  GDP KR+FTYF+LG ARF+YAS ARL+ LKF+++   +ADV+ALA AEFD+ DI +G
Sbjct:   50 DNYYEKDKLHKKPGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSASADVLALANAEFDIGDIPLG 119
[Close]
BLAST of mRNA_H-elongata_contig71520.14815.1 vs. uniprot
Match: W2M1B7_PHYPR (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=10 Tax=Peronosporaceae TaxID=4777 RepID=W2M1B7_PHYPR)

HSP 1 Score: 87.4 bits (215), Expect = 1.010e-19
Identity = 44/68 (64.71%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:    4 DGYFEKDRIPKGDPGKREFTYFMLGSARFLYASTARLILLKFLASWEPAADVMALATAEFDLKDIEMG 207
            D YFEKDRI  GDP KR FTYFMLG AR  YA+ ARL ++KF+ S   +ADV+ALATAEFDL  I  G
Sbjct:   36 DHYFEKDRIDAGDPSKRAFTYFMLGGARVAYATAARLAVVKFVGSMSASADVLALATAEFDLSSINEG 103
[Close]
BLAST of mRNA_H-elongata_contig71520.14815.1 vs. uniprot
Match: K3WIU0_GLOUD (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WIU0_GLOUD)

HSP 1 Score: 86.3 bits (212), Expect = 2.950e-19
Identity = 42/68 (61.76%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:    4 DGYFEKDRIPKGDPGKREFTYFMLGSARFLYASTARLILLKFLASWEPAADVMALATAEFDLKDIEMG 207
            D YFEKDRI  GDP KR FTYF+LG AR  YA+  RL ++KF+ S   +ADV+ALATAEFDL +I+ G
Sbjct:   38 DHYFEKDRISAGDPSKRAFTYFLLGGARVAYATAGRLAVIKFVGSMSASADVLALATAEFDLSNIDEG 105
[Close]
BLAST of mRNA_H-elongata_contig71520.14815.1 vs. uniprot
Match: A0A5D6XVF7_9STRA (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XVF7_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.950e-19
Identity = 42/68 (61.76%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:    4 DGYFEKDRIPKGDPGKREFTYFMLGSARFLYASTARLILLKFLASWEPAADVMALATAEFDLKDIEMG 207
            D YFEKDRI  GDP KR FTYF+LG AR  YA+  RL ++KF+ S   +ADV+ALATAEFDL +I+ G
Sbjct:   38 DHYFEKDRIAPGDPSKRAFTYFLLGGARVAYATAGRLAVIKFVGSMSASADVLALATAEFDLSNIDEG 105
[Close]
BLAST of mRNA_H-elongata_contig71520.14815.1 vs. uniprot
Match: F0W758_9STRA (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=2 Tax=Albugo TaxID=65356 RepID=F0W758_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 6.200e-19
Identity = 41/68 (60.29%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:    4 DGYFEKDRIPKGDPGKREFTYFMLGSARFLYASTARLILLKFLASWEPAADVMALATAEFDLKDIEMG 207
            D YFE DRI  GDP +R FTYF+LG AR +YA+ ARL ++KF+ S   +ADV+ALATAEFDL  I+ G
Sbjct:   41 DHYFETDRISSGDPSRRAFTYFVLGGARIMYATAARLAVIKFVGSMSASADVLALATAEFDLSSIDEG 108
[Close]
BLAST of mRNA_H-elongata_contig71520.14815.1 vs. uniprot
Match: A0A6V1WQS7_HETAK (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WQS7_HETAK)

HSP 1 Score: 85.1 bits (209), Expect = 9.970e-19
Identity = 43/69 (62.32%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:    1 QDGYFEKDRIPKGDPGKREFTYFMLGSARFLYASTARLILLKFLASWEPAADVMALATAEFDLKDIEMG 207
            QD YFEKDR+ KG+  KREFTYFMLG +RF+YAS ARL L+KF++S   +ADV+ALA+ E +L  +EMG
Sbjct:   48 QDHYFEKDRLAKGE-NKREFTYFMLGCSRFIYASAARLALIKFVSSMSASADVLALASVEVELGAVEMG 115
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71520.14815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FK16_ECTSI3.810e-3691.30Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
A0A2D4CB52_PYTIN2.020e-2064.71Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
A0A2P4YJR4_9STRA2.600e-2064.71Cytochrome b-c1 complex subunit Rieske (Fragment) ... [more]
H3GII1_PHYRM7.330e-2064.71Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
W7TQL4_9STRA9.840e-2060.00Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
W2M1B7_PHYPR1.010e-1964.71Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
K3WIU0_GLOUD2.950e-1961.76Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
A0A5D6XVF7_9STRA2.950e-1961.76Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
F0W758_9STRA6.200e-1960.29Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
A0A6V1WQS7_HETAK9.970e-1962.32Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71520contigH-elongata_contig71520:100..922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.0
Seed ortholog evalue9.6e-16
Seed eggNOG ortholog42099.EPrPV00000022319
KEGG koko:K00411
KEGG Pathwayko00190,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00151,M00152
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005750,GO:0006091,GO:0006950,GO:0008121,GO:0008150,GO:0008152,GO:0009055,GO:0009060,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0015980,GO:0016020,GO:0016491,GO:0016679,GO:0016681,GO:0019866,GO:0022900,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045275,GO:0045333,GO:0046872,GO:0050896,GO:0055114,GO:0070069,GO:0070469,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1902494,GO:1990204
EggNOG free text desc.Ubiquinol-cytochrome c reductase iron-sulfur subunit. Source PGD
EggNOG OGs1MAXT@121069,COG0723@1,KOG1671@2759
EC1.10.2.2
COG Functional cat.C
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiquinol-cytochrome c reductase iron-sulfur subunit 1, (Rieske iron-sulfur protein 1) (RISP1)
Ec32 orthologEc-18_002810.1
Exons2
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931116.0411828-CDS-H-elongata_contig71520:99..1801622931116.0411828-CDS-H-elongata_contig71520:99..180Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71520 100..180 -
1691679704.8357701-CDS-H-elongata_contig71520:99..1801691679704.8357701-CDS-H-elongata_contig71520:99..180Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71520 100..180 -
1622931116.055325-CDS-H-elongata_contig71520:796..9221622931116.055325-CDS-H-elongata_contig71520:796..922Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71520 797..922 -
1691679704.84902-CDS-H-elongata_contig71520:796..9221691679704.84902-CDS-H-elongata_contig71520:796..922Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71520 797..922 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71520.14815.1prot_H-elongata_contig71520.14815.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71520 100..922 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71520.14815.1

>prot_H-elongata_contig71520.14815.1 ID=prot_H-elongata_contig71520.14815.1|Name=mRNA_H-elongata_contig71520.14815.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
QDGYFEKDRIPKGDPGKREFTYFMLGSARFLYASTARLILLKFLASWEPA
ADVMALATAEFDLKDIEMG
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mRNA from alignment at H-elongata_contig71520:100..922-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71520.14815.1 ID=mRNA_H-elongata_contig71520.14815.1|Name=mRNA_H-elongata_contig71520.14815.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=823bp|location=Sequence derived from alignment at H-elongata_contig71520:100..922- (Himanthalia elongata Himel1 dioecious)
CAGGACGGGTACTTTGAGAAAGATCGCATTCCGAAGGGCGACCCGGGAAA
AAGGGAGTTCACTTACTTCATGCTGGGAAGCGCGCGCTTCCTGTACGCCT
CGACGGCTCGCCTCATCCTCCTTAAGGTGCGCCCAGAGACCCGCGCGTTG
AATTCGAGGCAGGAGGTAGAAAAGGGCTATAGTGTTATGGGTGCATGTTG
GGTGTGTTTGTACGTGGTTACTCCTCTATAAATGAAAATTGGCGGGTGCG
AAGACAATTATGGATGCTGGATTGCGGAGCGATCGCGGTGACTCGACCGG
GCGTTCCTCTTCCTCTTACAGGAGTCGAGCGATGAAAATGCTCCGTTCCG
TCCTCCAAAGGAAGCGTAGTCTTGAGTATGCAAAAGTTGATTGATTAAAC
CCCACCTCCCCATGCACTGCTTTCTCCGAAATATTTGTGTCGTCCTCGTC
TTGGGGAGCTTTGTGTGTGTGTGGGGGGGTGGGGGTGGGGGGGCAGTGCT
TCGTTTATTGGCTGTCGGATTTGTATAGTGCTCTATCCATTTCCCGCCTT
TATCGATCGATCCTCGGGAAACTGACACAACCAAACAAGATATGACGATG
ACCAATAATAGGAGAAAACAAAATAAGATATGACGATCAATAGATTAAGC
CGAAGCGGGATTTAGGGGATCACAGGAAATGCCTCTCACTGTCGCGATTA
CAACAAAACTACCCAACCCCTGGCGTAACTCTTTCCTGACAGTTCTTGGC
GTCGTGGGAGCCCGCTGCTGACGTCATGGCTCTGGCCACCGCAGAGTTCG
ATCTGAAGGACATCGAGATGGGT
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Coding sequence (CDS) from alignment at H-elongata_contig71520:100..922-

>mRNA_H-elongata_contig71520.14815.1 ID=mRNA_H-elongata_contig71520.14815.1|Name=mRNA_H-elongata_contig71520.14815.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig71520:100..922- (Himanthalia elongata Himel1 dioecious)
CAGGACGGGTACTTTGAGAAAGATCGCATTCCGAAGGGCGACCCGGGAAA
AAGGGAGTTCACTTACTTCATGCTGGGAAGCGCGCGCTTCCTGTACGCCT
CGACGGCTCGCCTCATCCTCCTTAAGCAGGACGGGTACTTTGAGAAAGAT
CGCATTCCGAAGGGCGACCCGGGAAAAAGGGAGTTCACTTACTTCATGCT
GGGAAGCGCGCGCTTCCTGTACGCCTCGACGGCTCGCCTCATCCTCCTTA
AGTTCTTGGCGTCGTGGGAGCCCGCTGCTGACGTCATGGCTCTGGCCACC
GCAGAGTTCGATCTGAAGGACATCGAGATGGGTTTCTTGGCGTCGTGGGA
GCCCGCTGCTGACGTCATGGCTCTGGCCACCGCAGAGTTCGATCTGAAGG
ACATCGAGATGGGT
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