mRNA_H-elongata_contig71493.14810.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig71493.14810.1 vs. uniprot
Match: D7FJR5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJR5_ECTSI) HSP 1 Score: 243 bits (619), Expect = 2.210e-75 Identity = 130/180 (72.22%), Postives = 154/180 (85.56%), Query Frame = 3
Query: 15 AEEEGLSALQTVNRRLLAQIEQQGKGIVIPTEDSKKIQRREEDLNGVNPFYAILGAVVAGAMSFGSWKATLWFANAYYSKPAPESDILAVARLTAFLKQAVVGMFALGSGVFGVNALGMGIMAGIVAVGVVKGELDPSPGATASKTAPAGASAEEVDRVMLKEAEEKILRAQADIDRELG 554
A+ E + LQTVN RLLAQIE+QGKGIVIPTE+SKKI+R+EEDLNGVNPFYAILGA A AMSFGSWKATLW A AYYSKPA ESDILAVAR+T+F+KQAVVG+FALG+G+FGV ALGMG+MA IVAVGV KGELDPSP A+ SK A GAS EE + +ML++A+E + +AQ +I+R +G
Sbjct: 84 ADGETKAKLQTVNARLLAQIEEQGKGIVIPTEESKKIKRKEEDLNGVNPFYAILGAGGAAAMSFGSWKATLWLAQAYYSKPAEESDILAVARMTSFIKQAVVGLFALGAGIFGVTALGMGVMAAIVAVGVAKGELDPSPEASGSKKAAPGASEEEKELLMLQQADESLRKAQEEIERNVG 263
BLAST of mRNA_H-elongata_contig71493.14810.1 vs. uniprot
Match: A0A835ZBJ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBJ7_9STRA) HSP 1 Score: 106 bits (264), Expect = 4.860e-23 Identity = 76/188 (40.43%), Postives = 107/188 (56.91%), Query Frame = 3
Query: 3 AEEDAEE--EGLSALQTVNRRLLAQIEQQ-GKGIVIPTEDSKKIQRREEDLNGVNPFYAILGAVVAGAMSFGSWKATLWFANAYY--SKPAPESDILAVARLTAFLKQAVVGMFALGSGVFGVNALGMGIMAGIVAVGVVKGELDPSPGATASKTAPAGASAEEVDRVMLKEAEEKILRAQADIDREL 551
A+ D+E+ E + Q+VN RLL +I K V+ ++R E DLNGV P A LG+V AGAMS G+W+ T A Y S+ SDILAV RLT +KQ +VG+ L +GVFGV ALGM ++ G V +GVV GELDPS + ++ A L++ ++ + +A A+I +L
Sbjct: 41 AKPDSEDSTESKAVTQSVNARLLEEINSSMPKYRVLEGATRLSVEREEVDLNGVQPLMAFLGSVGAGAMSAGAWRLTNVLAGIYLVQSEKFANSDILAVQRLTGLMKQVIVGLGTLATGVFGVTALGMALLGGRVLMGVVSGELDPSKVDEKASSSRGRGPAPTAQEGELEDVKQLLAKADAEIAAQL 228
BLAST of mRNA_H-elongata_contig71493.14810.1 vs. uniprot
Match: A0A7S1UHH8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UHH8_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 1.270e-15 Identity = 46/100 (46.00%), Postives = 64/100 (64.00%), Query Frame = 3
Query: 120 KIQRREEDLNGVNPFYAILGAVVAGAMSFGSWKATLWFANAYYSKPAPESDILAVARLTAFLKQAVVGMFALGSGVFGVNALGMGIMAGIVAVGVVKGEL 419
K +R E DLNG NP A LGA +AG +S +W+ T + +AY ESD RL+ +KQ VVG+ +L +GVFGV ALG+G++ +AVG+ +GEL
Sbjct: 56 KFERVEVDLNGTNPLQAFLGAGLAGLLSTVAWRFTTFSIDAYAKATPTESDFYLTNRLSGVMKQVVVGLGSLATGVFGVIALGLGLLGARIAVGISRGEL 155
BLAST of mRNA_H-elongata_contig71493.14810.1 vs. uniprot
Match: A0A7S1D238_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D238_CYCTE) HSP 1 Score: 80.1 bits (196), Expect = 8.830e-14 Identity = 58/162 (35.80%), Postives = 85/162 (52.47%), Query Frame = 3
Query: 21 EEGLSALQTVNRRLLAQIE------------QQGKGIVIPTEDSKKIQRREE-------DLNGVNPFYAILGAVVAGAMSFGSWKATLWFANAYYSKPAPESDILAVARLTAFLKQAVVGMFALGSGVFGVNALGMGIMAGIVAVGVVKGELDPSPGATASK 449
E+G +A T+N+RLLA++E Q K + + S K + DLNGVNP A G V A M+ G W T + A AY++ +DI + R+ + V+G+ +L SG FGV +G+ ++AG VA GV+ GELDP+P A+K
Sbjct: 45 EQGSAATNTINQRLLAELEEATSRETTGRASQLSKNLGLDAFRSNKSDEERQASIEAAKDLNGVNPVVAFAGGVFALGMAAGLWFLTCFLA-AYFADHPANTDIYFIQRVAQVFRNLVMGLVSLASGFFGVIGMGILLLAGRVAYGVMDGELDPTPIKKAAK 205
BLAST of mRNA_H-elongata_contig71493.14810.1 vs. uniprot
Match: A0A7S2RQ43_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RQ43_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 1.200e-11 Identity = 44/134 (32.84%), Postives = 71/134 (52.99%), Query Frame = 3
Query: 42 QTVNRRLLAQIEQQGKGIV-----IPTEDSKKIQRREEDLNGVNPFYAILGAVVAGAMSFGSWKATLWFANAYYSKPAPESDILAVARLTAFLKQAVVGMFALGSGVFGVNALGMGIMAGIVAVGVVKGELDPS 428
Q++N RL+ +I +Q + + +P + I +ED+ V+PF + GAV+ S+G WKAT + A + P E + R ++ VG F+L SG+FGV A G+ + V +G++ GEL PS
Sbjct: 50 QSINDRLMMEIAEQEEAVPTLESDLPEMEKAPILGYKEDIEDVDPFLTLGGAVLTAGASYGMWKATGFLATKFAEHPPSEDAFYVIQRAVVLVRTMTVGGFSLASGIFGVTAFGLFALGLRVLIGLLVGELRPS 183
BLAST of mRNA_H-elongata_contig71493.14810.1 vs. uniprot
Match: A0A7S4B5P2_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B5P2_CHRCT) HSP 1 Score: 68.9 bits (167), Expect = 1.260e-9 Identity = 45/126 (35.71%), Postives = 70/126 (55.56%), Query Frame = 3
Query: 51 NRRLLAQIEQQGKGIVIPTEDSKKIQRREEDLNGVNPFYAILGAVVAGAMSFGSWKATLWFANAYYSKPAPESDILAVARLTAFLKQAVVGMFALGSGVFGVNALGMGIMAGIVAVGVVKGELDPS 428
N LLA+I+ ++ PT + ++ DLNG+ P ++GA+ + +W+ T+ + PA ES V RLT + VV M ALG+GV G+ ++G +A VA+GV+KGELDP+
Sbjct: 119 NEALLAEIQ----ALMPPTAEPAP-EKMPVDLNGIRPRDLVIGALSYAVVCVLAWQFTIAAGTYFAEHPAEESSFYVVNRLTGLARVVVVSMGALGAGVTGIASVGQAALAVQVAIGVMKGELDPT 239
BLAST of mRNA_H-elongata_contig71493.14810.1 vs. uniprot
Match: A0A2C6WEE2_NOSLI (Uncharacterized protein n=2 Tax=Nostoc TaxID=1177 RepID=A0A2C6WEE2_NOSLI) HSP 1 Score: 54.7 bits (130), Expect = 7.230e-6 Identity = 27/72 (37.50%), Postives = 50/72 (69.44%), Query Frame = 3
Query: 156 NPFYAILGAVVAGAMSFGSWKATLWFANAYYSKPAPESDILAVARLTAFLKQAVVGMFALGSGVFGVNALGM 371
+P +I+GAV++GAM+FG + + A ++ +KP + L + ++T+ ++ VVG+ ALGSG+FG+ A+G+
Sbjct: 19 SPLRSIIGAVISGAMAFGLYSLMISIATSFATKPVHSLNPLVI-KITSAVRTLVVGVVALGSGIFGIVAIGL 89 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71493.14810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig71493.14810.1 >prot_H-elongata_contig71493.14810.1 ID=prot_H-elongata_contig71493.14810.1|Name=mRNA_H-elongata_contig71493.14810.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp MSFGSWKATLWFANAYYSKPAPESDILAVARLTAFLKQAVVGMFALGSGVback to top mRNA from alignment at H-elongata_contig71493:437..3106- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig71493.14810.1 ID=mRNA_H-elongata_contig71493.14810.1|Name=mRNA_H-elongata_contig71493.14810.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2670bp|location=Sequence derived from alignment at H-elongata_contig71493:437..3106- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig71493:437..3106- >mRNA_H-elongata_contig71493.14810.1 ID=mRNA_H-elongata_contig71493.14810.1|Name=mRNA_H-elongata_contig71493.14810.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig71493:437..3106- (Himanthalia elongata Himel1 dioecious)back to top |