mRNA_H-elongata_contig71439.14806.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71439.14806.1
Unique NamemRNA_H-elongata_contig71439.14806.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig71439.14806.1 vs. uniprot
Match: D8LI01_ECTSI (Haloacid dehalogenase-like hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI01_ECTSI)

HSP 1 Score: 289 bits (739), Expect = 1.230e-92
Identity = 143/198 (72.22%), Postives = 164/198 (82.83%), Query Frame = 1
Query:   10 RENGIVFVPASGRGKSGMFSAMEELGESLKRDGAPFVCMNGLTVYGQGDGCH--GEIIYSEVMCPRLAARVIGFWRSHPLAKAAGVSLCGSEGDTLVVERLDKRTSGFTSYSEPLPVEVGDLMDAIEAGMKLNRLFFWGETRAAVDAFKVDLAEYLKDHPAELTRGVPEMIEVLPPGASKAVGLGALLKEMGISPDEV 597
            R  GI+FVPASGR K GM S M ELG+ L+RDG+P VCMNGLTVYGQGDG    GEII+SE+MCP LAARV+ FW++HPLA+AAGVSLCGSEG+T+VVE LD RTS F  + EPLP EVG   +AI  GM LNRL+FWG TRAAVDAF+ DL E+L+DHPAELTRGVPEMIEVLP GASKAVGL ALLK +G+SP+EV
Sbjct:  276 RAKGIIFVPASGRSKLGMISVMGELGQELQRDGSPIVCMNGLTVYGQGDGNGDLGEIIHSELMCPELAARVVAFWKAHPLAEAAGVSLCGSEGETIVVETLDPRTSSFPDWGEPLPKEVGSWQEAIAGGMGLNRLYFWGPTRAAVDAFEEDLKEHLQDHPAELTRGVPEMIEVLPHGASKAVGLEALLKTLGVSPEEV 473          
BLAST of mRNA_H-elongata_contig71439.14806.1 vs. uniprot
Match: A0A6H5J9Y9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Y9_9PHAE)

HSP 1 Score: 268 bits (686), Expect = 1.620e-84
Identity = 142/204 (69.61%), Postives = 163/204 (79.90%), Query Frame = 1
Query:   10 RENGIVFVPASGRGKSGMFSAMEELGESLKRDGAPFVCMNGLTVYGQGDGCH--GEIIYSEVMCPRLAARVIGFWRSHPLAKAAGVSLCGSEGDTLVVERLDKRTS----GFTSYSE-PLP-VEVGDLMDAIEAGMKLNRLFFWGETRAAVDAFKVDLAEYLKDHPAELTRGVPEMIEVLPPGASKAVGLGALLKEMGISPDEV 597
            R  GI+FVPASGR KSGM SAM ELG+ L+RDG+PFVCMNGLTVYGQGDG    GEII+SE+MC  LAARV+ FW++HPLA+AAGVSLCGSEG+T+VVE LD RTS    GF  +   P   +  G   +AI  GM LNRL+FWG TRAAVDAF+ DL E+LKDHPAELTRGVPEMIEVLP GASKAVGL ALLK +G+SP+EV
Sbjct:  258 RAKGIIFVPASGRSKSGMISAMGELGQELQRDGSPFVCMNGLTVYGQGDGNGDLGEIIHSELMCLELAARVVAFWKAHPLAEAAGVSLCGSEGETIVVETLDPRTSRKVLGFELFGFWPCDSLREGSWQEAIAGGMGLNRLYFWGPTRAAVDAFEEDLKEHLKDHPAELTRGVPEMIEVLPHGASKAVGLEALLKTLGVSPEEV 461          
BLAST of mRNA_H-elongata_contig71439.14806.1 vs. uniprot
Match: D8LI88_ECTSI (Haloacid dehalogenase-like hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI88_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 1.710e-25
Identity = 67/191 (35.08%), Postives = 105/191 (54.97%), Query Frame = 1
Query:   22 IVFVPASGRGKSGMFSAM-EELGESLKRDGAPFVCMNGLTVY-GQGDGCHGEIIYSEVMCPRLAARVIGFWRSHPLAKAAGVSLCGSEGDTLVVERLDKRTSGFTSYSEPLPVEVGDLMDAIEAGMKLNRLFFWGETRAAVDAFKVDLAEYLKDHPAELTRGVPEMIEVLPPGASKAVGLGALLKEMGISP 588
            + F PA+G+ ++GM+  + E++   LK    P V + GL VY G GD    E++Y  ++   + ++V  F          GVSL    GD +V    D  T     YSEP+P  VG L DA+ AG+++++L    +++ A+D  + D+   + D  A  T+ +P+M+EVLP GASK  G+  LLK +GI P
Sbjct:  130 LAFFPATGKTRTGMYKILGEDIAAHLKTKDTPGVFIQGLVVYSGAGD----EVLYERLLDVEIVSQVASFCEER------GVSLIAYSGDEIVCSVKDAETDKIALYSEPMPSAVGPLTDAMAAGLRVHKLILM-DSKEAIDRVRPDIERLIGDR-ATFTQALPDMLEVLPAGASKGHGVDVLLKHLGIDP 308          
BLAST of mRNA_H-elongata_contig71439.14806.1 vs. uniprot
Match: A0A836C834_9STRA (HAD-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C834_9STRA)

HSP 1 Score: 106 bits (264), Expect = 5.760e-24
Identity = 67/190 (35.26%), Postives = 100/190 (52.63%), Query Frame = 1
Query:   13 ENGIVFVPASGRGKSGMFSAMEELGESLKRDGAPFVCMNGLTVYGQGDGCHGEIIYSEVMCPRLAARVIGFWRSHPLAKAAGVSLCGSEGDTLVVERL-DKRTSGFTSYSEPLPVEVGDLMDAIEAGMKLNRLFFWGETRAAVDAFKVDLAEYLKDHPAELTRGVPEMIEVLPPGASKAVGLGALLKEMG 579
            ++GIVF PA+G+ ++GM + +   G+ LK  GAP V + GL VYG G     ++IY  ++   +   V  F R         +SL    GD +V  RL DK  +    Y EP P  VG++ +A+ AG+ +++L         V   +  LA+ L    A L + +P M+EVLP GASK +G+  LL  MG
Sbjct:   98 DSGIVFFPATGKSRAGMMNTLGPAGDILKARGAPGVYIQGLVVYGPGPD--SKVIYERLLGADIGREVAQFCRDR------NMSLIAYSGDRIVCTRLEDKYVTTIADYHEPFPEAVGEIDEAMAAGLPVHKLIIMAPAEEVVQQ-RPALAQLLGQR-ASLVQAMPHMLEVLPLGASKGIGVAKLLAHMG 277          
BLAST of mRNA_H-elongata_contig71439.14806.1 vs. uniprot
Match: A0A6H5KW38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW38_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 9.330e-24
Identity = 64/187 (34.22%), Postives = 101/187 (54.01%), Query Frame = 1
Query:   34 PASGRGKSGMFSAM-EELGESLKRDGAPFVCMNGLTVY-GQGDGCHGEIIYSEVMCPRLAARVIGFWRSHPLAKAAGVSLCGSEGDTLVVERLDKRTSGFTSYSEPLPVEVGDLMDAIEAGMKLNRLFFWGETRAAVDAFKVDLAEYLKDHPAELTRGVPEMIEVLPPGASKAVGLGALLKEMGISP 588
            P + + ++GM+  + E++   LK    P V + GL VY G GD    E++Y  ++   + ++V  F          GVSL    GD +V    D  T     YSEP+P  VG L DA+ AG+++++L    +++ A+D  + D+   + D  A  T+ +P+M+EVLP GASK  G+  LLK +GI P
Sbjct:   16 PRARQTRTGMYKILGEDIAAHLKAKDTPGVFIQGLVVYSGAGD----EVLYERLLDIEIVSQVASFCEER------GVSLIAYSGDEIVCSEKDAETDKIALYSEPMPSAVGPLTDAMAAGLRVHKLILM-DSKEAIDRVRPDIERLIGDR-ATFTQALPDMLEVLPAGASKGHGVNVLLKHLGIDP 190          
BLAST of mRNA_H-elongata_contig71439.14806.1 vs. uniprot
Match: R7QCM4_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCM4_CHOCR)

HSP 1 Score: 99.0 bits (245), Expect = 3.670e-21
Identity = 66/201 (32.84%), Postives = 105/201 (52.24%), Query Frame = 1
Query:    4 VLRENGIVFVPASGRGKSGMFSAMEELGESLKR---DGAPFVCMNGLTVYGQGDGCHGEIIYSEVMCPRLAARVIGFWRSHPLAKAAGVSLCGSEGDTLVVERLDKRTSGFTSYSEPLPVEVGDLMDAIEAGMKLNRLFFWGETRAAVDAFKVDLAEYLKDHPAELTRGVPEMIEVLPPGASKAVGLGALLKEMGISPDEV 597
            +L E  ++FVPA+G+ ++G   +M ++G+ L      G P V + GL V+G+    +G+++Y       LA R +       +AK  G+SL     D ++ ER DK      SY EP P+ +GD  DAI     LN+  +  E  + +D  +  +AE + +    LT+    M+EVLPP ASK  G+  LL  + I+P+ V
Sbjct:  107 LLDETDVMFVPATGKSRAGALKSMADVGDYLNDRNPGGCPGVYLQGLIVFGE----NGDVVYENKCADMLAQRTVD------IAKELGLSLIAYSRDDILCERTDKFVDLIPSYKEPSPLAIGDWGDAI-GKRPLNKFIYMAEP-SHIDEIRPIVAERIGNL-GHLTQAQSNMLEVLPPNASKGNGVRRLLNSLQIAPEHV 294          
BLAST of mRNA_H-elongata_contig71439.14806.1 vs. uniprot
Match: A0A7S3XQN8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQN8_HETAK)

HSP 1 Score: 97.1 bits (240), Expect = 1.290e-20
Identity = 59/194 (30.41%), Postives = 99/194 (51.03%), Query Frame = 1
Query:   10 RENGIVFVPASGRGKSGMFSAMEELGESLKRDGAPFVCMNGLTVYGQGDGCHGEIIYSEVMCPRLAARVIGFWRSHPLAKAAGVSLCGSEGDTLVVERLDKRTSGFTSYSEPLPVEVGDLMDAIEA-GMKLNRLFFWGETRAAVDAFKVDLAEYLKDHPAELTRGVPEMIEVLPPGASKAVGLGALLKEMGISP 588
            R+ GI+F PA+G+ + G+++A+ E G+ LK++  P V + GL VY Q    +G +I+  ++      +V+ F          G+SL     D ++  + D  T    +Y EP P  +G L +A+ A G   N+L   G     +   +  + E L    AE+T+ +  M+E+LP G SK  G+  LL  +G+ P
Sbjct:   67 RKKGILFFPATGKSRQGVYNALGEFGQELKKENCPGVFLQGLIVYDQ----NGNVIHEMLLPLEPVKKVVQFCTRE------GISLVAYHRDRILCSQRDANTDKLINYCEPTPEAIGPLDEAMVANGQVYNKLIIMGNDEDQITKIRPAM-EALIGEDAEITQAIGYMLEILPKGGSKGDGVRRLLGALGVDP 249          
BLAST of mRNA_H-elongata_contig71439.14806.1 vs. uniprot
Match: A0A0G4H592_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H592_9ALVE)

HSP 1 Score: 95.1 bits (235), Expect = 9.760e-20
Identity = 69/200 (34.50%), Postives = 101/200 (50.50%), Query Frame = 1
Query:   10 RENGIVFVPASGRGKSGMFSAMEELGESLKRDGA-PFVCMNGLTVYGQGDGCHGEIIYSEVMCPRLAARVIGFWRSHPLAKAAGVSLCGSEGDTLVVERLDKRTSGF-TSYSEPLPVEVGDLMDAIEAGMKLNRLFFWG--ETRAAVDAFKVDLAEYLKDHPAELTRGVPEMIEVLPPGASKAVGLGALLKEMGISPDEV 597
            R NG     ASGR ++G  +A+   GE LK  G  P V  NGL VYGQ      ++++   +     A V  F R      A G+   G   + ++ + L    +     Y E LP+ VGD+++A + G  +N++  +   ET AAV      LA  L      + + VP+MIEVLP GASKA G+ ALLK + I P+++
Sbjct:   80 RRNGKFIFIASGRTRTGAMNALGAYGELLKAQGGFPGVYCNGLLVYGQ----RSQVLFERALDTSAVAAVAEFCR------ARGLPFVGYSREEILCDELTAHLARMHNEYKEALPLAVGDVVEAAKEGRVINKMLIFDDPETIAAVRPALESLAPSLG---GRVVQAVPDMIEVLPEGASKAEGIAALLKNVNIDPEDL 266          
BLAST of mRNA_H-elongata_contig71439.14806.1 vs. uniprot
Match: A0A1X6NK81_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NK81_PORUM)

HSP 1 Score: 94.4 bits (233), Expect = 2.250e-19
Identity = 61/187 (32.62%), Postives = 101/187 (54.01%), Query Frame = 1
Query:   19 GIVFVPASGRGKSGMFSAMEELGESLKR---DGAPFVCMNGLTVYGQGDGCHGEIIYSEVMCPRLAARVIGFWRSHPLAKAAGVSLCGSEGDTLVVERLDKRTSGFTSYSEPLPVEVGDLMDAIEAGMKLNRLFFWGETRAAVDAFKVDLAEYLKDHPAELTRGVPEMIEVLPPGASKAVGLGALLK 570
            GI+FVPA+G+ + G  +A+ +LG+ L+    +G P V + GL V+G      G ++Y   + P+LA  ++        A+A   SL    GD ++ E  D+ T    +Y+EP+P  VG     ++  + LN+  + G     + A +  + E +    A +T+ +P+M+EVLPPGASK  G+  LLK
Sbjct:  108 GILFVPATGKSRYGALAALGDLGDDLRAAYPNGVPGVYLQGLNVFGDD----GSMVYEHTVTPKLARAIVAE------ARAVNSSLIAYSGDRILCETADEFTDLLPTYAEPVPEVVGTWESVLDT-VPLNKFIYLGSADH-ITALRPAVEEAVGAE-ATITQALPDMLEVLPPGASKGDGVRRLLK 281          
BLAST of mRNA_H-elongata_contig71439.14806.1 vs. uniprot
Match: A0A2M8NRE9_9CHLR (Uncharacterized protein n=1 Tax=Phototrophicales bacterium TaxID=2364211 RepID=A0A2M8NRE9_9CHLR)

HSP 1 Score: 85.9 bits (211), Expect = 1.210e-16
Identity = 62/197 (31.47%), Postives = 101/197 (51.27%), Query Frame = 1
Query:   13 ENGIVFVPASGRGKSGMFSAMEELGESLKRDGAPFVCMNGLTVYGQGDGCHGEIIYSEVMCPRLAARVIGFWRSHPLAKAAGVSLCGSEGDTLVVERLDKRTSG--FTSYSEPLPVEVGDLMDAIEAGMKLNRLFFWGETRAAVDAFKVDLAEYLKDHPAELTRGVPEMIEVLPPGASKAVGLGALLKEMGISPDEV 597
            + GI  + A+G+  + +   +E  G        P +C+ GL VY  GDG   +I++ +V+ P  A +VI +      A+  G       G  ++++  ++      FT Y EP+P  VG L + +++ + +N++   GE RA V A +  L   +      +  GVP+M+EVLPPG SK   L ALLKE+ + PD V
Sbjct:   40 DKGITVIFATGKTYTAVAPLVERFGIKT-----PCICVQGLVVY-NGDG---KIMHQQVLSPAAARQVITY------AEDRGFFALLYSGSRILMKARNEEVEKTLFTRYHEPVPETVGALQNVLDS-VPINKIALVGEPRA-VKALRWQLNAQIGSAVRLMQAGVPQMVEVLPPGTSKGTALKALLKELKVDPDHV 219          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71439.14806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI01_ECTSI1.230e-9272.22Haloacid dehalogenase-like hydrolase n=1 Tax=Ectoc... [more]
A0A6H5J9Y9_9PHAE1.620e-8469.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI88_ECTSI1.710e-2535.08Haloacid dehalogenase-like hydrolase n=1 Tax=Ectoc... [more]
A0A836C834_9STRA5.760e-2435.26HAD-like domain-containing protein n=1 Tax=Tribone... [more]
A0A6H5KW38_9PHAE9.330e-2434.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
R7QCM4_CHOCR3.670e-2132.84Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S3XQN8_HETAK1.290e-2030.41Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A0G4H592_9ALVE9.760e-2034.50Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A1X6NK81_PORUM2.250e-1932.62Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A2M8NRE9_9CHLR1.210e-1631.47Uncharacterized protein n=1 Tax=Phototrophicales b... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71439contigH-elongata_contig71439:580..3158 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score291.6
Seed ortholog evalue2.8e-76
Seed eggNOG ortholog2880.D8LI01
GOsGO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0042578,GO:0044237
EggNOG free text desc.phosphatase activity
EggNOG OGs2QUN8@2759,COG0319@1
Ec32 ortholog descriptionHAD-like domain
Ec32 orthologEc-18_001200.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size597
Cds size597
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71439.14806.1prot_H-elongata_contig71439.14806.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71439 580..3158 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931114.7379105-CDS-H-elongata_contig71439:579..7481622931114.7379105-CDS-H-elongata_contig71439:579..748Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71439 580..748 -
1691679704.1884859-CDS-H-elongata_contig71439:579..7481691679704.1884859-CDS-H-elongata_contig71439:579..748Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71439 580..748 -
1622931114.7516298-CDS-H-elongata_contig71439:1594..16651622931114.7516298-CDS-H-elongata_contig71439:1594..1665Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71439 1595..1665 -
1691679704.1996548-CDS-H-elongata_contig71439:1594..16651691679704.1996548-CDS-H-elongata_contig71439:1594..1665Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71439 1595..1665 -
1622931114.7677984-CDS-H-elongata_contig71439:2114..21481622931114.7677984-CDS-H-elongata_contig71439:2114..2148Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71439 2115..2148 -
1691679704.2158651-CDS-H-elongata_contig71439:2114..21481691679704.2158651-CDS-H-elongata_contig71439:2114..2148Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71439 2115..2148 -
1622931114.7842083-CDS-H-elongata_contig71439:2666..28511622931114.7842083-CDS-H-elongata_contig71439:2666..2851Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71439 2667..2851 -
1691679704.2303493-CDS-H-elongata_contig71439:2666..28511691679704.2303493-CDS-H-elongata_contig71439:2666..2851Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71439 2667..2851 -
1622931114.8283978-CDS-H-elongata_contig71439:3020..31581622931114.8283978-CDS-H-elongata_contig71439:3020..3158Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71439 3021..3158 -
1691679704.241258-CDS-H-elongata_contig71439:3020..31581691679704.241258-CDS-H-elongata_contig71439:3020..3158Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71439 3021..3158 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71439.14806.1

>prot_H-elongata_contig71439.14806.1 ID=prot_H-elongata_contig71439.14806.1|Name=mRNA_H-elongata_contig71439.14806.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=199bp
MVLRENGIVFVPASGRGKSGMFSAMEELGESLKRDGAPFVCMNGLTVYGQ
GDGCHGEIIYSEVMCPRLAARVIGFWRSHPLAKAAGVSLCGSEGDTLVVE
RLDKRTSGFTSYSEPLPVEVGDLMDAIEAGMKLNRLFFWGETRAAVDAFK
VDLAEYLKDHPAELTRGVPEMIEVLPPGASKAVGLGALLKEMGISPDEV
back to top

mRNA from alignment at H-elongata_contig71439:580..3158-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71439.14806.1 ID=mRNA_H-elongata_contig71439.14806.1|Name=mRNA_H-elongata_contig71439.14806.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2579bp|location=Sequence derived from alignment at H-elongata_contig71439:580..3158- (Himanthalia elongata Himel1 dioecious)
ATGGTGTTAAGGGAGAACGGGATTGTCTTCGTGCCGGCGAGCGGTCGGGG CAAATCGGGGATGTTTTCGGCCATGGAGGAGCTCGGGGAAAGTCTCAAGA GGGACGGGGCGCCCTTCGTCTGCATGAACGGCCTTACGGTGAGCCCCGAG TCGACGACGATCTGTCACGACACCATGTACGACGATCTGATACGACCAGT TCCTATTGTTATTCCGATTGTAACTTCGGATCTCGATGCTGAATTCCAAT TCCGATTTCGAGTTGAACGACGATGAGTTACAGCGCGTTCCGTGGGGCTA CGAACAGGTTTACGGGCAGGGAGATGGGTGCCACGGGGAGATAATCTACA GCGAGGTTATGTGCCCCAGACTTGCGGCGAGGGTGATCGGTTTCTGGCGG AGCCATCCCCTGGCGAAGGCGGCCGGGGTTTCATTGTGCGGCAGCGAGGG GGACACCCTCGTTGTCGAGCGTCTGGACAAGCGAACGAGTGGGTGAGAGG ACCGAGAAAATCCCGACCCGACTTTGTTCGAACTAGGCAAGGCGACTTCG TACCAAATATCAGTGCACGAATATCCCAAGCATATCAACGAAAAATATAC GGTGAACCAGTGAAGCGTCTTACTGACAGGGGCAGGGCGGGGGGGGAGGG TTTGGGGGATTGGGGGATTCGTCAGTGGAGGTTGAAGGAGGTGTACGTAA TTTGAACGCGACGAGTCATCCGTGGGACTCAAGTTTCTCTTGTTCTGCTC GCCGCGTCATGTGTCACCGTGCTTCGGATGGTAATGGAAGGGAGGGGGTG GTTGGATGGCGTGTCCATTGTACAGAGGAACACGTTGGCCAGCGCTCCGG GTTAGAGGTGCACGTCTCCAAAAGGGGGTTTCTCCAGAGGTTTGCCTACA CTTGTAAGTTCCACTCTTTCCCCATCCTGCCATTTAAAGAGGGTCCTTTT GGACGTGGTTGCCTGCCTGGGTCTGTCGTCCTGCCGCCGCCGGCCGTCGC TCCCTGATAGGTTTACCAGCTACTCGGAGCCGCTACCGGTGGAGGTGGGA CGAGACGTGGAATGATTTCTCTATTCTGCAATGTTTTCTCTTTGCACGTA GTCGTTTATCTCTCTGTCTACGAAAACCCTCTGTTTTTTCGTTTGGTTCT GTAACGTTTGTTCTTGTGACGTTTTCGTTTTGTCTTGTAACGTCCTTGTT GTTTGTTTTGTTTTGTTTCGTCTCGTTTTCGGTTTGTTTCTTTTAGTTTC TCCTATTTTTTTTCCGCCCGGAGCCATACCTACGACAAGACGGTCGTGCC TAGGCGCCTCGCCTGAGAACGACTCCCGGTTTATTATTGGTCGAGTCCAT CTTTTTCCCTGCGAATCCCGTCACCGGCTTCGCTCCATGCACGCGGGAGA TATTTGGGCATAATCCGCAAATAGTTTTGCGAGTTTTCTGTTTTGATTTT CTTCACTTATTCTCATCATGTCATGGATACCGATGGCGCCAAGGTGGGTG ATTTGATGGATGCGATCGAGGCTGGGATGAAGCTGAACCGCCTTTTCTTC TGGGGAGAGACCCGGTGAGACACCAGCCAAAGAGCTAGTCGGTCTTCAGG ACTGTCGGATCTTCAAGATTCATCCATTCATTCAGTTTAAAAATATTCGA GGGGAAATGATGCGGTTGGAAACCCTTCGCAGGCTTTTCAAACCGCGGTT TAGAGGCTATCTTCATTTTATTTTTTTTGGTTCGTGCCGCAGAAAATCAC GGATGATAATTTTTTCGACACGGGTAGTGACATCGCGATCGCTGGCAATA GCTGCTCTAGATCTCGTATGAAGATACACCCTACATCCCCTGATGGGGTC ACCATTTGCTTGATGCTTTTTCTCCAAGTGTCAGCTCAGGACACGACCTG TGAAACGGTGTGACATTGATCCTATGATTTGAATATCGGACGGCGATAGT AGAAGCAAGCGTGTCACAATCACCATATTCATCGCAAGCGTGTGACACGC CGAGATCGAATCTACAGGACGATGGCGGTCGGTGAATTATTTGAAGGTGG AAACATTGCGTATGTCCTATGCTACAGTGCAACCACCCCCCCCCCCCCCC CCCTCCCGCGGTCTGCCAAAAAGAAGGGCCGCGCCCCGCGCCCGCTGAGG GGGGGGGNNNNNNNNNNGGGGAAGAATTTGCGTGTGGCCTAGCATCCACG CCACCCCCCCCCCCCCCCCGGTTCTGGCCTGGTTCAATACAAAGAGTCGC GCACCGCTTCGCGTGATGTAGGAGTGGTGAGTATAATCGCGCGTACATGC CCCACGGCCGGTGGGGTACGCAAGGTGAAAACGCCTGAAGGCGACAAAAA CAAATAACGTGCTCTTTTGTGTGGGCGCACGTTTGGTCATGCACTATGCA TTCGCGACAGGGCTGCCGTCGATGCATTTAAGGTTGATCTGGCCGAATAC CTGAAGGACCATCCCGCTGAGCTGACGCGTGGAGTGCCCGAGATGATCGA GGTGTTGCCACCGGGAGCTTCTAAGGCGGTTGGTCTGGGGGCTCTCCTGA AGGAGATGGGCATCAGTCCGGACGAGGTC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig71439:580..3158-

>mRNA_H-elongata_contig71439.14806.1 ID=mRNA_H-elongata_contig71439.14806.1|Name=mRNA_H-elongata_contig71439.14806.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1194bp|location=Sequence derived from alignment at H-elongata_contig71439:580..3158- (Himanthalia elongata Himel1 dioecious)
ATGGTGTTAAGGGAGAACGGGATTGTCTTCGTGCCGGCGAGCGGTCGGGG
CAAATCGGGGATGTTTTCGGCCATGGAGGAGCTCGGGGAAAGTCTCAAGA
GGGACGGGGCGCCCTTCGTCTGCATGAACGGCCTTACGATGGTGTTAAGG
GAGAACGGGATTGTCTTCGTGCCGGCGAGCGGTCGGGGCAAATCGGGGAT
GTTTTCGGCCATGGAGGAGCTCGGGGAAAGTCTCAAGAGGGACGGGGCGC
CCTTCGTCTGCATGAACGGCCTTACGGTTTACGGGCAGGGAGATGGGTGC
CACGGGGAGATAATCTACAGCGAGGTTATGTGCCCCAGACTTGCGGCGAG
GGTGATCGGTTTCTGGCGGAGCCATCCCCTGGCGAAGGCGGCCGGGGTTT
CATTGTGCGGCAGCGAGGGGGACACCCTCGTTGTCGAGCGTCTGGACAAG
CGAACGAGTGGGTTTACGGGCAGGGAGATGGGTGCCACGGGGAGATAATC
TACAGCGAGGTTATGTGCCCCAGACTTGCGGCGAGGGTGATCGGTTTCTG
GCGGAGCCATCCCCTGGCGAAGGCGGCCGGGGTTTCATTGTGCGGCAGCG
AGGGGGACACCCTCGTTGTCGAGCGTCTGGACAAGCGAACGAGTGGGTTT
ACCAGCTACTCGGAGCCGCTACCGGTGGAGGTTTACCAGCTACTCGGAGC
CGCTACCGGTGGAGGTGGGTGATTTGATGGATGCGATCGAGGCTGGGATG
AAGCTGAACCGCCTTTTCTTCTGGGGAGAGACCCGGTGGGTGATTTGATG
GATGCGATCGAGGCTGGGATGAAGCTGAACCGCCTTTTCTTCTGGGGAGA
GACCCGGGCTGCCGTCGATGCATTTAAGGTTGATCTGGCCGAATACCTGA
AGGACCATCCCGCTGAGCTGACGCGTGGAGTGCCCGAGATGATCGAGGTG
TTGCCACCGGGAGCTTCTAAGGCGGTTGGTCTGGGGGCTCTCCTGAAGGA
GATGGGCATCAGTCCGGACGAGGTCGGCTGCCGTCGATGCATTTAAGGTT
GATCTGGCCGAATACCTGAAGGACCATCCCGCTGAGCTGACGCGTGGAGT
GCCCGAGATGATCGAGGTGTTGCCACCGGGAGCTTCTAAGGCGGTTGGTC
TGGGGGCTCTCCTGAAGGAGATGGGCATCAGTCCGGACGAGGTC
back to top