mRNA_H-elongata_contig7142.14802.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7142.14802.1
Unique NamemRNA_H-elongata_contig7142.14802.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig7142.14802.1 vs. uniprot
Match: A0A6H5L7W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7W2_9PHAE)

HSP 1 Score: 340 bits (872), Expect = 7.520e-116
Identity = 167/201 (83.08%), Postives = 184/201 (91.54%), Query Frame = 1
Query:    1 VHSRQEKNSVLRHLRNVPFEITPGLVADFVLSPKTCAVFISLRYHLLYPHYLIQRIKELSMHFTLRILLCHVDIEDSEKPLLEINKTAVLNDFTCILAWSLQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVIRSVNKSDVLTLASNFGSFQAICDASAEKLALCPGLGDKKVARIHEALHEPLSRAHRQKRI 603
            VH RQEKNS+LRHLRNV FEITPGLVADFVL PKTCAVFISLRYHLLYPHYLIQRIKELS HFTLR+LLCHVD++DSE PLLEINK AV NDFT +LAWSLQEAARYLETYKAYE KSA+SIQEKV+DD+L KLQDCFGV+RSVNKSDVLTLASNFGS +A+CDA+A +L+LCPGLG+KKV+RIHEALHEPL R H   R+
Sbjct:   83 VHKRQEKNSMLRHLRNVAFEITPGLVADFVLGPKTCAVFISLRYHLLYPHYLIQRIKELSGHFTLRVLLCHVDVDDSETPLLEINKMAVFNDFTLVLAWSLQEAARYLETYKAYEHKSADSIQEKVDDDFLGKLQDCFGVVRSVNKSDVLTLASNFGSLKAVCDATAGELSLCPGLGEKKVSRIHEALHEPLVRKHSSSRL 283          
BLAST of mRNA_H-elongata_contig7142.14802.1 vs. uniprot
Match: D7G4P9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P9_ECTSI)

HSP 1 Score: 238 bits (606), Expect = 2.830e-77
Identity = 118/155 (76.13%), Postives = 136/155 (87.74%), Query Frame = 1
Query:  142 YPHYLIQRIKELSMHFTLRILLCHVDIEDSEKPLLEINKTAVLNDFTCILAWSLQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVIRSVNKSDVLTLASNFGSFQAICDASAEKLALCPGLGDKKVARIHEALHEPLSRAHRQKRIR 606
            +PH  +Q   ELS HFTLR+LLCHVD++DSE PLLEINK AV NDFT +LAWSLQEAARYLETYKAYE KSA+SIQEKV+DD+L KLQDCFGV+RSVNKSDVLTLASNFGS +A+CDA+A +L+LCPGLG+KKVARIHEALHEPL R H   R++
Sbjct:    5 HPHIFMQ---ELSGHFTLRVLLCHVDVDDSETPLLEINKMAVFNDFTLVLAWSLQEAARYLETYKAYEHKSADSIQEKVDDDFLGKLQDCFGVVRSVNKSDVLTLASNFGSLKAVCDATAGELSLCPGLGEKKVARIHEALHEPLVRKHSSSRLK 156          
BLAST of mRNA_H-elongata_contig7142.14802.1 vs. uniprot
Match: A0A835ZCX2_9STRA (Restriction endonuclease type II-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCX2_9STRA)

HSP 1 Score: 210 bits (535), Expect = 2.550e-65
Identity = 103/179 (57.54%), Postives = 133/179 (74.30%), Query Frame = 1
Query:   40 LRNVPFEITPGLVADFVLSPKTCAVFISLRYHLLYPHYLIQRIKELSMHFTLRILLCHVDIEDSEKPLLEINKTAVLNDFTCILAWSLQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVIRSVNKSDVLTLASNFGSFQAICDASAEKLALCPGLGDKKVARIHEALHEPL 576
            +RNV +E   G++ DFV+SP  CA+F+S+RYH L P Y+ QRI+EL   F LR+LL  VD +D+   LLE+NK AV  +FT +LAWS  EAARYLET+KA+E K   SIQEKVN DYLAK QD    + +VN++DV+TL S FGS Q +C+AS E++ALCPGLGDKKV  +H+ALH+P 
Sbjct:    7 IRNVEYEFATGIMPDFVISPTACALFLSMRYHQLKPTYIAQRIEELRTSFRLRLLLVLVDQDDNVNLLLELNKMAVARNFTLLLAWSWPEAARYLETFKAFENKPPTSIQEKVNSDYLAKAQDALCTVHAVNRTDVVTLLSTFGSLQGLCEASMEEMALCPGLGDKKVVALHDALHQPF 185          
BLAST of mRNA_H-elongata_contig7142.14802.1 vs. uniprot
Match: M4FED2_BRARP (Uncharacterized protein n=5 Tax=Brassicaceae TaxID=3700 RepID=M4FED2_BRARP)

HSP 1 Score: 210 bits (535), Expect = 2.090e-63
Identity = 105/195 (53.85%), Postives = 142/195 (72.82%), Query Frame = 1
Query:    1 VHSRQEKNSVLRHLRNVPFEITPGLVADFVLSPKTCAVFISLRYHLLYPHYLIQRIKELSMHFTLRILLCHVDIEDSEKPLLEINKTAVLNDFTCILAWSLQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVIRSVNKSDVLTLASNFGSFQAICDASAEKLALCPGLGDKKVARIHEALHEPLSRA 585
            V +RQ+ N +L+H+RNV + +   ++ D++L   TCA+++SLRYHLL+P YL  RI+EL  +F LR++LCHVD+EDS KPLLE+ KTA+L+D T + AWSL E ARYLET K YE K A+ IQ +++ DYL++L      IR VNKSDV+TL S FGS   I DAS E LA CPG+G++KV R+++  HEP  RA
Sbjct:  123 VSNRQKGNPLLKHIRNVKW-VFSDIIPDYLLGQTTCALYLSLRYHLLHPDYLYFRIRELQKNFKLRVVLCHVDVEDSVKPLLEVTKTALLHDCTLLCAWSLTECARYLETIKVYENKPADLIQGQMDTDYLSRLNHSLTSIRHVNKSDVVTLGSTFGSLAHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRA 316          
BLAST of mRNA_H-elongata_contig7142.14802.1 vs. uniprot
Match: A0A1J3ENY5_NOCCA (DNA excision repair protein ERCC-1 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3ENY5_NOCCA)

HSP 1 Score: 207 bits (527), Expect = 2.260e-63
Identity = 103/195 (52.82%), Postives = 141/195 (72.31%), Query Frame = 1
Query:    1 VHSRQEKNSVLRHLRNVPFEITPGLVADFVLSPKTCAVFISLRYHLLYPHYLIQRIKELSMHFTLRILLCHVDIEDSEKPLLEINKTAVLNDFTCILAWSLQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVIRSVNKSDVLTLASNFGSFQAICDASAEKLALCPGLGDKKVARIHEALHEPLSRA 585
            V +RQ+ N +L+H+RNV + +   ++ D++L   TCA+++SLRYHLL+P YL  RI+EL  +F LR++LCHVD+EDS KPLLE+ KTA+L+D T + AWS+ E ARYLET K YE K A+ IQ +++ DYL++L      IR VNKSDV+TL S FGS   I DAS E LA CPG+G++KV  +++  HEP  RA
Sbjct:   25 VSNRQKGNPLLKHIRNVKW-VFSDIIPDYLLGQSTCALYLSLRYHLLHPDYLYFRIRELQKNFKLRVVLCHVDVEDSVKPLLEVTKTALLHDCTLLCAWSMTECARYLETIKVYENKPADLIQGQMDTDYLSRLNQSLTSIRHVNKSDVVTLGSTFGSLAHIIDASMEDLARCPGIGERKVKWLYDTFHEPFKRA 218          
BLAST of mRNA_H-elongata_contig7142.14802.1 vs. uniprot
Match: A0A6J0NQ48_RAPSA (DNA excision repair protein ERCC-1 n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0NQ48_RAPSA)

HSP 1 Score: 210 bits (535), Expect = 3.000e-63
Identity = 105/195 (53.85%), Postives = 142/195 (72.82%), Query Frame = 1
Query:    1 VHSRQEKNSVLRHLRNVPFEITPGLVADFVLSPKTCAVFISLRYHLLYPHYLIQRIKELSMHFTLRILLCHVDIEDSEKPLLEINKTAVLNDFTCILAWSLQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVIRSVNKSDVLTLASNFGSFQAICDASAEKLALCPGLGDKKVARIHEALHEPLSRA 585
            V +RQ+ N +L+H+RNV + +   ++ D++L   TCA+++SLRYHLL+P YL  RI+EL  +F LR++LCHVD+EDS KPLLE+ KTA+L+D T + AWSL E ARYLET K YE K A+ IQ +++ DYL++L      IR VNKSDV+TL S FGS   I DAS E LA CPG+G++KV R+++  HEP  RA
Sbjct:  128 VSNRQKGNPLLKHIRNVKW-VYSDIIPDYLLGQTTCALYLSLRYHLLHPDYLYFRIRELQRNFKLRVVLCHVDVEDSVKPLLEVTKTALLHDCTLLCAWSLTECARYLETIKVYENKPADLIQGQMDTDYLSRLNHSLTSIRHVNKSDVVTLGSTFGSLAHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRA 321          
BLAST of mRNA_H-elongata_contig7142.14802.1 vs. uniprot
Match: A0A078GQT9_BRANA ((rape) hypothetical protein n=6 Tax=Brassicaceae TaxID=3700 RepID=A0A078GQT9_BRANA)

HSP 1 Score: 210 bits (534), Expect = 3.190e-63
Identity = 105/195 (53.85%), Postives = 142/195 (72.82%), Query Frame = 1
Query:    1 VHSRQEKNSVLRHLRNVPFEITPGLVADFVLSPKTCAVFISLRYHLLYPHYLIQRIKELSMHFTLRILLCHVDIEDSEKPLLEINKTAVLNDFTCILAWSLQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVIRSVNKSDVLTLASNFGSFQAICDASAEKLALCPGLGDKKVARIHEALHEPLSRA 585
            V +RQ+ N +L+H+RNV + +   ++ D++L   TCA+++SLRYHLL+P YL  RI+EL  +F LR++LCHVD+EDS KPLLE+ KTA+L+D T + AWSL E ARYLET K YE K A+ IQ +++ DYL++L      IR VNKSDV+TL S FGS   I DAS E LA CPG+G++KV R+++  HEP  RA
Sbjct:  124 VSNRQKGNPLLKHIRNVKW-VFSEIIPDYLLGQTTCALYLSLRYHLLHPDYLYFRIRELQKNFKLRVVLCHVDVEDSVKPLLEVTKTALLHDCTLLCAWSLTECARYLETIKVYENKPADLIQGQMDTDYLSRLNHSLTSIRHVNKSDVVTLGSTFGSLAHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRA 317          
BLAST of mRNA_H-elongata_contig7142.14802.1 vs. uniprot
Match: A0A1D1ZHX7_9ARAE (DNA excision repair protein ERCC-1 n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1ZHX7_9ARAE)

HSP 1 Score: 206 bits (525), Expect = 4.260e-63
Identity = 101/201 (50.25%), Postives = 143/201 (71.14%), Query Frame = 1
Query:    1 VHSRQEKNSVLRHLRNVPFEITPGLVADFVLSPKTCAVFISLRYHLLYPHYLIQRIKELSMHFTLRILLCHVDIEDSEKPLLEINKTAVLNDFTCILAWSLQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVIRSVNKSDVLTLASNFGSFQAICDASAEKLALCPGLGDKKVARIHEALHEPLSRAHRQKRI 603
            V  RQ+ N +L+H+RNV +     +V D++L   +CA++ISLRYHLL+P Y+  RI+EL  +F LR++LCH+D+ED  KPLLE+ +TA+L+D + +  WSL+E  RYLET K YE KSA+SI+E+++ DYL++L      IR VNK+DV+TL S FGS   I DAS E+LA CPG+G++KV R+++  HEP  R   Q  I
Sbjct:   18 VSHRQKGNPLLKHIRNVRWTFA-DVVCDYLLGQNSCALYISLRYHLLHPDYVYYRIRELQKNFKLRVVLCHIDVEDVAKPLLEVTRTALLHDCSLLCGWSLEECGRYLETIKVYENKSADSIREQMDTDYLSRLTHALTTIRHVNKTDVVTLGSAFGSLSRIMDASMEELARCPGIGERKVQRLYDTFHEPFRRTSSQSTI 217          
BLAST of mRNA_H-elongata_contig7142.14802.1 vs. uniprot
Match: A0A835LMH1_9MAGN (Uncharacterized protein n=2 Tax=Coptis chinensis TaxID=261450 RepID=A0A835LMH1_9MAGN)

HSP 1 Score: 208 bits (530), Expect = 8.780e-63
Identity = 100/195 (51.28%), Postives = 141/195 (72.31%), Query Frame = 1
Query:    1 VHSRQEKNSVLRHLRNVPFEITPGLVADFVLSPKTCAVFISLRYHLLYPHYLIQRIKELSMHFTLRILLCHVDIEDSEKPLLEINKTAVLNDFTCILAWSLQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVIRSVNKSDVLTLASNFGSFQAICDASAEKLALCPGLGDKKVARIHEALHEPLSRA 585
            V  RQ+ N +L+H+RNV + +   ++ D++L   +CA+++SLRYHLL+P YL  RIKEL  +F LR++LCHVD+ED  KP+LE+ KTA+L+D T + AWSL+E  RYLET K YE K A+ +Q +++ DYL++L      +R VNK+DV+TL SNFGS   I D+S E LA CPG+G+KKV R+++  HEP  RA
Sbjct:  103 VSHRQKGNPLLKHIRNVKW-LFADIICDYLLGQNSCALYLSLRYHLLHPDYLYYRIKELQKNFKLRVVLCHVDVEDVVKPILEVTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADILQGQMDTDYLSRLNHALTAVRRVNKTDVVTLGSNFGSLSRIMDSSMEDLARCPGIGEKKVKRLYDTFHEPFRRA 296          
BLAST of mRNA_H-elongata_contig7142.14802.1 vs. uniprot
Match: A0A7J8YLC7_GOSAI (Uncharacterized protein n=6 Tax=Malvoideae TaxID=214907 RepID=A0A7J8YLC7_GOSAI)

HSP 1 Score: 206 bits (525), Expect = 9.850e-63
Identity = 100/194 (51.55%), Postives = 137/194 (70.62%), Query Frame = 1
Query:    1 VHSRQEKNSVLRHLRNVPFEITPGLVADFVLSPKTCAVFISLRYHLLYPHYLIQRIKELSMHFTLRILLCHVDIEDSEKPLLEINKTAVLNDFTCILAWSLQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVIRSVNKSDVLTLASNFGSFQAICDASAEKLALCPGLGDKKVARIHEALHEPLSR 582
            V  RQ+ N +L+H+RNV +     +  D++L   TCA+++SLRYHLL+P YL  RI+EL  +F LR++LCHVD+ED  KPLLE+ KTA+L+D T +  WSL+E  RYLET K YE K A+ IQ +++ DYL++L      +R VNK+DV+TL S FGS  +I DAS E LA CPG+G++KV R+H+  HEP  R
Sbjct:   40 VSHRQKGNPLLKHIRNVRWAFA-DVACDYLLGQNTCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLCGWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLNHALTTVRRVNKTDVVTLGSTFGSLSSIMDASMEDLARCPGIGERKVKRLHDTFHEPFKR 232          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7142.14802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7W2_9PHAE7.520e-11683.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4P9_ECTSI2.830e-7776.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZCX2_9STRA2.550e-6557.54Restriction endonuclease type II-like protein n=1 ... [more]
M4FED2_BRARP2.090e-6353.85Uncharacterized protein n=5 Tax=Brassicaceae TaxID... [more]
A0A1J3ENY5_NOCCA2.260e-6352.82DNA excision repair protein ERCC-1 (Fragment) n=1 ... [more]
A0A6J0NQ48_RAPSA3.000e-6353.85DNA excision repair protein ERCC-1 n=1 Tax=Raphanu... [more]
A0A078GQT9_BRANA3.190e-6353.85(rape) hypothetical protein n=6 Tax=Brassicaceae T... [more]
A0A1D1ZHX7_9ARAE4.260e-6350.25DNA excision repair protein ERCC-1 n=1 Tax=Anthuri... [more]
A0A835LMH1_9MAGN8.780e-6351.28Uncharacterized protein n=2 Tax=Coptis chinensis T... [more]
A0A7J8YLC7_GOSAI9.850e-6351.55Uncharacterized protein n=6 Tax=Malvoideae TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7142contigH-elongata_contig7142:2412..3546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score240.7
Seed ortholog evalue5.9e-61
Seed eggNOG ortholog2880.D7G4P9
Preferred nameERCC1
KEGG koko:K01230,ko:K03514,ko:K10849,ko:K10898,ko:K14850
KEGG ReactionR05982,R06722
KEGG Pathwayko00510,ko00513,ko01100,ko01524,ko03018,ko03420,ko03460,ko04141,map00510,map00513,map01100,map01524,map03018,map03420,map03460,map04141
KEGG ModuleM00073,M00074,M00393,M00413
GOsGO:0000003,GO:0000014,GO:0000109,GO:0000110,GO:0000228,GO:0000280,GO:0000428,GO:0000710,GO:0000712,GO:0000720,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000733,GO:0000735,GO:0000736,GO:0000781,GO:0000784,GO:0001085,GO:0001091,GO:0001094,GO:0001098,GO:0001099,GO:0001302,GO:0001325,GO:0001775,GO:0002200,GO:0002204,GO:0002208,GO:0002250,GO:0002252,GO:0002263,GO:0002285,GO:0002312,GO:0002366,GO:0002376,GO:0002377,GO:0002381,GO:0002440,GO:0002443,GO:0002449,GO:0002460,GO:0002520,GO:0002562,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003684,GO:0003697,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006277,GO:0006281,GO:0006283,GO:0006284,GO:0006289,GO:0006290,GO:0006293,GO:0006294,GO:0006295,GO:0006296,GO:0006298,GO:0006302,GO:0006303,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006949,GO:0006950,GO:0006955,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007131,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007530,GO:0007531,GO:0007533,GO:0007534,GO:0007548,GO:0007568,GO:0007569,GO:0008022,GO:0008134,GO:0008150,GO:0008152,GO:0008283,GO:0008406,GO:0008584,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009650,GO:0009653,GO:0009791,GO:0009892,GO:0009893,GO:0009987,GO:0010165,GO:0010212,GO:0010213,GO:0010224,GO:0010259,GO:0010332,GO:0010604,GO:0010605,GO:0010638,GO:0010639,GO:0016043,GO:0016064,GO:0016444,GO:0016445,GO:0016447,GO:0016591,GO:0016787,GO:0016788,GO:0016888,GO:0016893,GO:0017108,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019724,GO:0019899,GO:0019904,GO:0019953,GO:0022402,GO:0022412,GO:0022413,GO:0022414,GO:0022607,GO:0030097,GO:0030154,GO:0030880,GO:0031323,GO:0031324,GO:0031325,GO:0031334,GO:0031593,GO:0031974,GO:0031981,GO:0032200,GO:0032204,GO:0032205,GO:0032206,GO:0032392,GO:0032501,GO:0032502,GO:0032504,GO:0032505,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0033683,GO:0034622,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0035166,GO:0035264,GO:0035822,GO:0035825,GO:0035861,GO:0036297,GO:0040007,GO:0042113,GO:0042592,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043240,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044703,GO:0044798,GO:0045002,GO:0045132,GO:0045137,GO:0045165,GO:0045190,GO:0045321,GO:0045934,GO:0045935,GO:0046483,GO:0046546,GO:0046649,GO:0046661,GO:0046982,GO:0046983,GO:0048232,GO:0048256,GO:0048285,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048569,GO:0048583,GO:0048585,GO:0048589,GO:0048608,GO:0048609,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051704,GO:0051716,GO:0055029,GO:0060249,GO:0060255,GO:0061458,GO:0061695,GO:0061819,GO:0061982,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070522,GO:0070911,GO:0070914,GO:0071103,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071824,GO:0071840,GO:0071897,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090305,GO:0090575,GO:0090656,GO:0090734,GO:0090737,GO:0097159,GO:0098687,GO:0098813,GO:0104004,GO:0140013,GO:0140030,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1903046,GO:1904353,GO:1904354,GO:1904429,GO:1904431,GO:1904505,GO:1904506,GO:1905764,GO:1905765,GO:1990234,GO:1990391,GO:2001020,GO:2001021,GO:2001251,GO:2001252
EggNOG free text desc.meiotic mismatch repair
EggNOG OGsCOG5241@1,KOG2841@2759
EC2.1.1.287,2.7.7.19,3.2.1.113
COG Functional cat.L
CAZyGH47
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03016,ko03019,ko03400,ko04131
Hectar predicted targeting categoryother localisation
Exons4
Model size618
Cds size618
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7142.14802.1prot_H-elongata_contig7142.14802.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7142 2412..3546 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931114.394266-CDS-H-elongata_contig7142:2411..25821622931114.394266-CDS-H-elongata_contig7142:2411..2582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7142 2412..2582 +
1691679704.0320528-CDS-H-elongata_contig7142:2411..25821691679704.0320528-CDS-H-elongata_contig7142:2411..2582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7142 2412..2582 +
1622931114.4081178-CDS-H-elongata_contig7142:2711..28461622931114.4081178-CDS-H-elongata_contig7142:2711..2846Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7142 2712..2846 +
1691679704.0427105-CDS-H-elongata_contig7142:2711..28461691679704.0427105-CDS-H-elongata_contig7142:2711..2846Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7142 2712..2846 +
1622931114.4236453-CDS-H-elongata_contig7142:3039..31081622931114.4236453-CDS-H-elongata_contig7142:3039..3108Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7142 3040..3108 +
1691679704.0503829-CDS-H-elongata_contig7142:3039..31081691679704.0503829-CDS-H-elongata_contig7142:3039..3108Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7142 3040..3108 +
1622931114.4399056-CDS-H-elongata_contig7142:3303..35461622931114.4399056-CDS-H-elongata_contig7142:3303..3546Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7142 3304..3546 +
1691679704.0607848-CDS-H-elongata_contig7142:3303..35461691679704.0607848-CDS-H-elongata_contig7142:3303..3546Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7142 3304..3546 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7142.14802.1

>prot_H-elongata_contig7142.14802.1 ID=prot_H-elongata_contig7142.14802.1|Name=mRNA_H-elongata_contig7142.14802.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=206bp
VHSRQEKNSVLRHLRNVPFEITPGLVADFVLSPKTCAVFISLRYHLLYPH
YLIQRIKELSMHFTLRILLCHVDIEDSEKPLLEINKTAVLNDFTCILAWS
LQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVIRSVNKSDVL
TLASNFGSFQAICDASAEKLALCPGLGDKKVARIHEALHEPLSRAHRQKR
IRQET*
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mRNA from alignment at H-elongata_contig7142:2412..3546+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7142.14802.1 ID=mRNA_H-elongata_contig7142.14802.1|Name=mRNA_H-elongata_contig7142.14802.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1135bp|location=Sequence derived from alignment at H-elongata_contig7142:2412..3546+ (Himanthalia elongata Himel1 dioecious)
GTGCACAGTCGCCAGGAGAAGAATTCCGTCCTTCGCCACCTAAGGAATGT TCCGTTCGAAATAACTCCGGGGCTTGTTGCTGACTTCGTTCTCAGCCCGA AAACATGCGCTGTTTTCATCAGCCTGAGGTATCATCTCCTTTACCCTCAC TACCTCATCCAAAGAATCAAGGTGAGATTTGGTCTGAATAACATAACAGG CACAGTAAACGGTACATCCAAAATTATTGATTGTTTTACGAAGCTCAGAT ACACATTTAAACTAGACTAAACATTCATTATACACTTTATTTTTGTACAG GAGCTGTCGATGCACTTCACTCTGCGGATACTACTATGCCATGTTGATAT TGAGGACAGCGAGAAACCCCTCCTCGAAATCAACAAGACGGCAGTACTGA ACGACTTCACGTGCATCTTGGCGTGGAGCCTACAGGTGGTACAACTTTAG TATTCAAATTAATATGCGAGACCAAGTCACCTCCACAGCTCTAGACTAAT TTGTTCTGCCACGATCTGCAGTGGCTGTTAATTTGTCTACGCCATACATC TTACAAAAGTCATAACAAGCAAACAGACTGACGGGTTCGAATACCCCCCT CTTATTATCTACTCCGATGGAGCAACAGGAGGCAGCCAGATACTTGGAAA CGTACAAGGCATACGAACAAAAATCGGCAGAAAGCATCCAAGAAAAGGTG AAGGCAATGACCGTTCTGGAAAGAAGCTACCGAATGAGCTGATGACGGTT TTGTTGTTCGGTACCCACAGCCCCCACGTCCACTGAGACCCTCTCAAAGG ACTTACAGGCTAAGGATATTGCACGTATCTTGAGACCCAGAAGCCGACAC ATGACATCGCTGATACCGCTCGTCCACTGCTTATTTTTCTAGGTCAACGA TGACTACCTCGCCAAACTACAGGACTGCTTCGGAGTGATAAGATCTGTCA ACAAGTCTGACGTCCTCACGCTCGCATCGAACTTCGGATCTTTCCAAGCA ATATGCGATGCGTCTGCCGAAAAACTTGCGCTTTGTCCAGGCCTTGGGGA CAAAAAGGTCGCGAGAATACATGAAGCTTTACACGAACCGCTGTCGCGTG CTCACAGGCAAAAGCGCATTCGACAAGAAACGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig7142:2412..3546+

>mRNA_H-elongata_contig7142.14802.1 ID=mRNA_H-elongata_contig7142.14802.1|Name=mRNA_H-elongata_contig7142.14802.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1236bp|location=Sequence derived from alignment at H-elongata_contig7142:2412..3546+ (Himanthalia elongata Himel1 dioecious)
GTGCACAGTCGCCAGGAGAAGAATTCCGTCCTTCGCCACCTAAGGAATGT
TCCGTTCGAAATAACTCCGGGGCTTGTTGCTGACTTCGTTCTCAGCCCGA
AAACATGCGCTGTTTTCATCAGCCTGAGGTATCATCTCCTTTACCCTCAC
TACCTCATCCAAAGAATCAAGGTGCACAGTCGCCAGGAGAAGAATTCCGT
CCTTCGCCACCTAAGGAATGTTCCGTTCGAAATAACTCCGGGGCTTGTTG
CTGACTTCGTTCTCAGCCCGAAAACATGCGCTGTTTTCATCAGCCTGAGG
TATCATCTCCTTTACCCTCACTACCTCATCCAAAGAATCAAGGAGCTGTC
GATGCACTTCACTCTGCGGATACTACTATGCCATGTTGATATTGAGGACA
GCGAGAAACCCCTCCTCGAAATCAACAAGACGGCAGTACTGAACGACTTC
ACGTGCATCTTGGCGTGGAGCCTACAGGAGCTGTCGATGCACTTCACTCT
GCGGATACTACTATGCCATGTTGATATTGAGGACAGCGAGAAACCCCTCC
TCGAAATCAACAAGACGGCAGTACTGAACGACTTCACGTGCATCTTGGCG
TGGAGCCTACAGGAGGCAGCCAGATACTTGGAAACGTACAAGGCATACGA
ACAAAAATCGGCAGAAAGCATCCAAGAAAAGGAGGCAGCCAGATACTTGG
AAACGTACAAGGCATACGAACAAAAATCGGCAGAAAGCATCCAAGAAAAG
GTCAACGATGACTACCTCGCCAAACTACAGGACTGCTTCGGAGTGATAAG
ATCTGTCAACAAGTCTGACGTCCTCACGCTCGCATCGAACTTCGGATCTT
TCCAAGCAATATGCGATGCGTCTGCCGAAAAACTTGCGCTTTGTCCAGGC
CTTGGGGACAAAAAGGTCGCGAGAATACATGAAGCTTTACACGAACCGCT
GTCGCGTGCTCACAGGCAAAAGCGCATTCGACAAGAAACGTAGGTCAACG
ATGACTACCTCGCCAAACTACAGGACTGCTTCGGAGTGATAAGATCTGTC
AACAAGTCTGACGTCCTCACGCTCGCATCGAACTTCGGATCTTTCCAAGC
AATATGCGATGCGTCTGCCGAAAAACTTGCGCTTTGTCCAGGCCTTGGGG
ACAAAAAGGTCGCGAGAATACATGAAGCTTTACACGAACCGCTGTCGCGT
GCTCACAGGCAAAAGCGCATTCGACAAGAAACGTAG
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