mRNA_H-elongata_contig7142.14802.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig7142.14802.1 vs. uniprot
Match: A0A6H5L7W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7W2_9PHAE) HSP 1 Score: 340 bits (872), Expect = 7.520e-116 Identity = 167/201 (83.08%), Postives = 184/201 (91.54%), Query Frame = 1
Query: 1 VHSRQEKNSVLRHLRNVPFEITPGLVADFVLSPKTCAVFISLRYHLLYPHYLIQRIKELSMHFTLRILLCHVDIEDSEKPLLEINKTAVLNDFTCILAWSLQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVIRSVNKSDVLTLASNFGSFQAICDASAEKLALCPGLGDKKVARIHEALHEPLSRAHRQKRI 603
VH RQEKNS+LRHLRNV FEITPGLVADFVL PKTCAVFISLRYHLLYPHYLIQRIKELS HFTLR+LLCHVD++DSE PLLEINK AV NDFT +LAWSLQEAARYLETYKAYE KSA+SIQEKV+DD+L KLQDCFGV+RSVNKSDVLTLASNFGS +A+CDA+A +L+LCPGLG+KKV+RIHEALHEPL R H R+
Sbjct: 83 VHKRQEKNSMLRHLRNVAFEITPGLVADFVLGPKTCAVFISLRYHLLYPHYLIQRIKELSGHFTLRVLLCHVDVDDSETPLLEINKMAVFNDFTLVLAWSLQEAARYLETYKAYEHKSADSIQEKVDDDFLGKLQDCFGVVRSVNKSDVLTLASNFGSLKAVCDATAGELSLCPGLGEKKVSRIHEALHEPLVRKHSSSRL 283
BLAST of mRNA_H-elongata_contig7142.14802.1 vs. uniprot
Match: D7G4P9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P9_ECTSI) HSP 1 Score: 238 bits (606), Expect = 2.830e-77 Identity = 118/155 (76.13%), Postives = 136/155 (87.74%), Query Frame = 1
Query: 142 YPHYLIQRIKELSMHFTLRILLCHVDIEDSEKPLLEINKTAVLNDFTCILAWSLQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVIRSVNKSDVLTLASNFGSFQAICDASAEKLALCPGLGDKKVARIHEALHEPLSRAHRQKRIR 606
+PH +Q ELS HFTLR+LLCHVD++DSE PLLEINK AV NDFT +LAWSLQEAARYLETYKAYE KSA+SIQEKV+DD+L KLQDCFGV+RSVNKSDVLTLASNFGS +A+CDA+A +L+LCPGLG+KKVARIHEALHEPL R H R++
Sbjct: 5 HPHIFMQ---ELSGHFTLRVLLCHVDVDDSETPLLEINKMAVFNDFTLVLAWSLQEAARYLETYKAYEHKSADSIQEKVDDDFLGKLQDCFGVVRSVNKSDVLTLASNFGSLKAVCDATAGELSLCPGLGEKKVARIHEALHEPLVRKHSSSRLK 156
BLAST of mRNA_H-elongata_contig7142.14802.1 vs. uniprot
Match: A0A835ZCX2_9STRA (Restriction endonuclease type II-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCX2_9STRA) HSP 1 Score: 210 bits (535), Expect = 2.550e-65 Identity = 103/179 (57.54%), Postives = 133/179 (74.30%), Query Frame = 1
Query: 40 LRNVPFEITPGLVADFVLSPKTCAVFISLRYHLLYPHYLIQRIKELSMHFTLRILLCHVDIEDSEKPLLEINKTAVLNDFTCILAWSLQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVIRSVNKSDVLTLASNFGSFQAICDASAEKLALCPGLGDKKVARIHEALHEPL 576
+RNV +E G++ DFV+SP CA+F+S+RYH L P Y+ QRI+EL F LR+LL VD +D+ LLE+NK AV +FT +LAWS EAARYLET+KA+E K SIQEKVN DYLAK QD + +VN++DV+TL S FGS Q +C+AS E++ALCPGLGDKKV +H+ALH+P
Sbjct: 7 IRNVEYEFATGIMPDFVISPTACALFLSMRYHQLKPTYIAQRIEELRTSFRLRLLLVLVDQDDNVNLLLELNKMAVARNFTLLLAWSWPEAARYLETFKAFENKPPTSIQEKVNSDYLAKAQDALCTVHAVNRTDVVTLLSTFGSLQGLCEASMEEMALCPGLGDKKVVALHDALHQPF 185
BLAST of mRNA_H-elongata_contig7142.14802.1 vs. uniprot
Match: M4FED2_BRARP (Uncharacterized protein n=5 Tax=Brassicaceae TaxID=3700 RepID=M4FED2_BRARP) HSP 1 Score: 210 bits (535), Expect = 2.090e-63 Identity = 105/195 (53.85%), Postives = 142/195 (72.82%), Query Frame = 1
Query: 1 VHSRQEKNSVLRHLRNVPFEITPGLVADFVLSPKTCAVFISLRYHLLYPHYLIQRIKELSMHFTLRILLCHVDIEDSEKPLLEINKTAVLNDFTCILAWSLQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVIRSVNKSDVLTLASNFGSFQAICDASAEKLALCPGLGDKKVARIHEALHEPLSRA 585
V +RQ+ N +L+H+RNV + + ++ D++L TCA+++SLRYHLL+P YL RI+EL +F LR++LCHVD+EDS KPLLE+ KTA+L+D T + AWSL E ARYLET K YE K A+ IQ +++ DYL++L IR VNKSDV+TL S FGS I DAS E LA CPG+G++KV R+++ HEP RA
Sbjct: 123 VSNRQKGNPLLKHIRNVKW-VFSDIIPDYLLGQTTCALYLSLRYHLLHPDYLYFRIRELQKNFKLRVVLCHVDVEDSVKPLLEVTKTALLHDCTLLCAWSLTECARYLETIKVYENKPADLIQGQMDTDYLSRLNHSLTSIRHVNKSDVVTLGSTFGSLAHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRA 316
BLAST of mRNA_H-elongata_contig7142.14802.1 vs. uniprot
Match: A0A1J3ENY5_NOCCA (DNA excision repair protein ERCC-1 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3ENY5_NOCCA) HSP 1 Score: 207 bits (527), Expect = 2.260e-63 Identity = 103/195 (52.82%), Postives = 141/195 (72.31%), Query Frame = 1
Query: 1 VHSRQEKNSVLRHLRNVPFEITPGLVADFVLSPKTCAVFISLRYHLLYPHYLIQRIKELSMHFTLRILLCHVDIEDSEKPLLEINKTAVLNDFTCILAWSLQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVIRSVNKSDVLTLASNFGSFQAICDASAEKLALCPGLGDKKVARIHEALHEPLSRA 585
V +RQ+ N +L+H+RNV + + ++ D++L TCA+++SLRYHLL+P YL RI+EL +F LR++LCHVD+EDS KPLLE+ KTA+L+D T + AWS+ E ARYLET K YE K A+ IQ +++ DYL++L IR VNKSDV+TL S FGS I DAS E LA CPG+G++KV +++ HEP RA
Sbjct: 25 VSNRQKGNPLLKHIRNVKW-VFSDIIPDYLLGQSTCALYLSLRYHLLHPDYLYFRIRELQKNFKLRVVLCHVDVEDSVKPLLEVTKTALLHDCTLLCAWSMTECARYLETIKVYENKPADLIQGQMDTDYLSRLNQSLTSIRHVNKSDVVTLGSTFGSLAHIIDASMEDLARCPGIGERKVKWLYDTFHEPFKRA 218
BLAST of mRNA_H-elongata_contig7142.14802.1 vs. uniprot
Match: A0A6J0NQ48_RAPSA (DNA excision repair protein ERCC-1 n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0NQ48_RAPSA) HSP 1 Score: 210 bits (535), Expect = 3.000e-63 Identity = 105/195 (53.85%), Postives = 142/195 (72.82%), Query Frame = 1
Query: 1 VHSRQEKNSVLRHLRNVPFEITPGLVADFVLSPKTCAVFISLRYHLLYPHYLIQRIKELSMHFTLRILLCHVDIEDSEKPLLEINKTAVLNDFTCILAWSLQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVIRSVNKSDVLTLASNFGSFQAICDASAEKLALCPGLGDKKVARIHEALHEPLSRA 585
V +RQ+ N +L+H+RNV + + ++ D++L TCA+++SLRYHLL+P YL RI+EL +F LR++LCHVD+EDS KPLLE+ KTA+L+D T + AWSL E ARYLET K YE K A+ IQ +++ DYL++L IR VNKSDV+TL S FGS I DAS E LA CPG+G++KV R+++ HEP RA
Sbjct: 128 VSNRQKGNPLLKHIRNVKW-VYSDIIPDYLLGQTTCALYLSLRYHLLHPDYLYFRIRELQRNFKLRVVLCHVDVEDSVKPLLEVTKTALLHDCTLLCAWSLTECARYLETIKVYENKPADLIQGQMDTDYLSRLNHSLTSIRHVNKSDVVTLGSTFGSLAHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRA 321
BLAST of mRNA_H-elongata_contig7142.14802.1 vs. uniprot
Match: A0A078GQT9_BRANA ((rape) hypothetical protein n=6 Tax=Brassicaceae TaxID=3700 RepID=A0A078GQT9_BRANA) HSP 1 Score: 210 bits (534), Expect = 3.190e-63 Identity = 105/195 (53.85%), Postives = 142/195 (72.82%), Query Frame = 1
Query: 1 VHSRQEKNSVLRHLRNVPFEITPGLVADFVLSPKTCAVFISLRYHLLYPHYLIQRIKELSMHFTLRILLCHVDIEDSEKPLLEINKTAVLNDFTCILAWSLQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVIRSVNKSDVLTLASNFGSFQAICDASAEKLALCPGLGDKKVARIHEALHEPLSRA 585
V +RQ+ N +L+H+RNV + + ++ D++L TCA+++SLRYHLL+P YL RI+EL +F LR++LCHVD+EDS KPLLE+ KTA+L+D T + AWSL E ARYLET K YE K A+ IQ +++ DYL++L IR VNKSDV+TL S FGS I DAS E LA CPG+G++KV R+++ HEP RA
Sbjct: 124 VSNRQKGNPLLKHIRNVKW-VFSEIIPDYLLGQTTCALYLSLRYHLLHPDYLYFRIRELQKNFKLRVVLCHVDVEDSVKPLLEVTKTALLHDCTLLCAWSLTECARYLETIKVYENKPADLIQGQMDTDYLSRLNHSLTSIRHVNKSDVVTLGSTFGSLAHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRA 317
BLAST of mRNA_H-elongata_contig7142.14802.1 vs. uniprot
Match: A0A1D1ZHX7_9ARAE (DNA excision repair protein ERCC-1 n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1ZHX7_9ARAE) HSP 1 Score: 206 bits (525), Expect = 4.260e-63 Identity = 101/201 (50.25%), Postives = 143/201 (71.14%), Query Frame = 1
Query: 1 VHSRQEKNSVLRHLRNVPFEITPGLVADFVLSPKTCAVFISLRYHLLYPHYLIQRIKELSMHFTLRILLCHVDIEDSEKPLLEINKTAVLNDFTCILAWSLQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVIRSVNKSDVLTLASNFGSFQAICDASAEKLALCPGLGDKKVARIHEALHEPLSRAHRQKRI 603
V RQ+ N +L+H+RNV + +V D++L +CA++ISLRYHLL+P Y+ RI+EL +F LR++LCH+D+ED KPLLE+ +TA+L+D + + WSL+E RYLET K YE KSA+SI+E+++ DYL++L IR VNK+DV+TL S FGS I DAS E+LA CPG+G++KV R+++ HEP R Q I
Sbjct: 18 VSHRQKGNPLLKHIRNVRWTFA-DVVCDYLLGQNSCALYISLRYHLLHPDYVYYRIRELQKNFKLRVVLCHIDVEDVAKPLLEVTRTALLHDCSLLCGWSLEECGRYLETIKVYENKSADSIREQMDTDYLSRLTHALTTIRHVNKTDVVTLGSAFGSLSRIMDASMEELARCPGIGERKVQRLYDTFHEPFRRTSSQSTI 217
BLAST of mRNA_H-elongata_contig7142.14802.1 vs. uniprot
Match: A0A835LMH1_9MAGN (Uncharacterized protein n=2 Tax=Coptis chinensis TaxID=261450 RepID=A0A835LMH1_9MAGN) HSP 1 Score: 208 bits (530), Expect = 8.780e-63 Identity = 100/195 (51.28%), Postives = 141/195 (72.31%), Query Frame = 1
Query: 1 VHSRQEKNSVLRHLRNVPFEITPGLVADFVLSPKTCAVFISLRYHLLYPHYLIQRIKELSMHFTLRILLCHVDIEDSEKPLLEINKTAVLNDFTCILAWSLQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVIRSVNKSDVLTLASNFGSFQAICDASAEKLALCPGLGDKKVARIHEALHEPLSRA 585
V RQ+ N +L+H+RNV + + ++ D++L +CA+++SLRYHLL+P YL RIKEL +F LR++LCHVD+ED KP+LE+ KTA+L+D T + AWSL+E RYLET K YE K A+ +Q +++ DYL++L +R VNK+DV+TL SNFGS I D+S E LA CPG+G+KKV R+++ HEP RA
Sbjct: 103 VSHRQKGNPLLKHIRNVKW-LFADIICDYLLGQNSCALYLSLRYHLLHPDYLYYRIKELQKNFKLRVVLCHVDVEDVVKPILEVTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADILQGQMDTDYLSRLNHALTAVRRVNKTDVVTLGSNFGSLSRIMDSSMEDLARCPGIGEKKVKRLYDTFHEPFRRA 296
BLAST of mRNA_H-elongata_contig7142.14802.1 vs. uniprot
Match: A0A7J8YLC7_GOSAI (Uncharacterized protein n=6 Tax=Malvoideae TaxID=214907 RepID=A0A7J8YLC7_GOSAI) HSP 1 Score: 206 bits (525), Expect = 9.850e-63 Identity = 100/194 (51.55%), Postives = 137/194 (70.62%), Query Frame = 1
Query: 1 VHSRQEKNSVLRHLRNVPFEITPGLVADFVLSPKTCAVFISLRYHLLYPHYLIQRIKELSMHFTLRILLCHVDIEDSEKPLLEINKTAVLNDFTCILAWSLQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVIRSVNKSDVLTLASNFGSFQAICDASAEKLALCPGLGDKKVARIHEALHEPLSR 582
V RQ+ N +L+H+RNV + + D++L TCA+++SLRYHLL+P YL RI+EL +F LR++LCHVD+ED KPLLE+ KTA+L+D T + WSL+E RYLET K YE K A+ IQ +++ DYL++L +R VNK+DV+TL S FGS +I DAS E LA CPG+G++KV R+H+ HEP R
Sbjct: 40 VSHRQKGNPLLKHIRNVRWAFA-DVACDYLLGQNTCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLCGWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLNHALTTVRRVNKTDVVTLGSTFGSLSSIMDASMEDLARCPGIGERKVKRLHDTFHEPFKR 232 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7142.14802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig7142.14802.1 >prot_H-elongata_contig7142.14802.1 ID=prot_H-elongata_contig7142.14802.1|Name=mRNA_H-elongata_contig7142.14802.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=206bp VHSRQEKNSVLRHLRNVPFEITPGLVADFVLSPKTCAVFISLRYHLLYPHback to top mRNA from alignment at H-elongata_contig7142:2412..3546+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig7142.14802.1 ID=mRNA_H-elongata_contig7142.14802.1|Name=mRNA_H-elongata_contig7142.14802.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1135bp|location=Sequence derived from alignment at H-elongata_contig7142:2412..3546+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig7142:2412..3546+ >mRNA_H-elongata_contig7142.14802.1 ID=mRNA_H-elongata_contig7142.14802.1|Name=mRNA_H-elongata_contig7142.14802.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1236bp|location=Sequence derived from alignment at H-elongata_contig7142:2412..3546+ (Himanthalia elongata Himel1 dioecious)back to top |