mRNA_H-elongata_contig71416.14801.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71416.14801.1
Unique NamemRNA_H-elongata_contig71416.14801.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig71416.14801.1 vs. uniprot
Match: D8LGS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGS7_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 1.080e-54
Identity = 98/159 (61.64%), Postives = 123/159 (77.36%), Query Frame = 1 
Query:    1 QVVQKWKQLGRTLCRLLRMSDYWYFFANDHTLSNKERAERRLSVLREQILHMRTGGGGGFARMRSLVRAFTERYPRSIWLNFQQLMRQPKSQRCRRDMSVCAILLSDIDNPFFRHTTADWPFPRLVDLVTDAYLMERPPLSVLYKEGDIAPRLIGRPTS 477
            Q V+KWK LG+ LCRLLRMSDYWY FA D  LS +ERA RR+SVL +QIL MR   G G   M++LV A  ERYPRS+W  F+QLMRQP+++R RRDM+VCA+LL +IDN FF++TTA WPF RLVDL +D+ L+++P LSVLY+EG+ APR I   T+
Sbjct:  482 QAVRKWKNLGKALCRLLRMSDYWYGFAFDGALSGEERAARRISVL-QQILEMR---GVGRTAMKTLVLAIAERYPRSVWSRFRQLMRQPRAERKRRDMAVCAVLLGEIDNQFFKYTTAGWPFSRLVDLASDSRLVQKPALSVLYEEGETAPRTIDSETT 636
[Close]
BLAST of mRNA_H-elongata_contig71416.14801.1 vs. uniprot
Match: A0A6H5KB88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB88_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 2.950e-27
Identity = 59/118 (50.00%), Postives = 79/118 (66.95%), Query Frame = 1 
Query:  187 MRSLVRAFTERYPRSIWLNFQQLMRQPKSQRCRRDMSVCAILLS---------------------DIDNPFFRHTTADWPFPRLVDLVTDAYLMERPPLSVLYKEGDIAPRLIGRPTS 477
            M++LV A  ERYPRS+W  F+QLMRQP+ +R RRDM+VCA+LL+                     +IDN FF++TTA WPF RLVDL +D+ L+++P LSVLY+EG+ APR I   T+
Sbjct:    1 MKTLVLAIAERYPRSVWSRFRQLMRQPRDERKRRDMAVCAVLLAVRFLTRNTMITRGSYRLCTEEEIDNQFFKYTTAGWPFSRLVDLASDSRLVQKPALSVLYEEGETAPRTIDSETT 118
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71416.14801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGS7_ECTSI1.080e-5461.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KB88_9PHAE2.950e-2750.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71416contigH-elongata_contig71416:1108..2444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_005170.1
Hectar predicted targeting categorymitochondrion
Exons4
Model size477
Cds size477
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71416.14801.1prot_H-elongata_contig71416.14801.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71416 1108..2444 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931114.3181007-CDS-H-elongata_contig71416:1107..12481622931114.3181007-CDS-H-elongata_contig71416:1107..1248Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71416 1108..1248 +
1691679703.9954002-CDS-H-elongata_contig71416:1107..12481691679703.9954002-CDS-H-elongata_contig71416:1107..1248Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71416 1108..1248 +
1622931114.332604-CDS-H-elongata_contig71416:1477..15491622931114.332604-CDS-H-elongata_contig71416:1477..1549Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71416 1478..1549 +
1691679704.005934-CDS-H-elongata_contig71416:1477..15491691679704.005934-CDS-H-elongata_contig71416:1477..1549Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71416 1478..1549 +
1622931114.3463895-CDS-H-elongata_contig71416:1827..19321622931114.3463895-CDS-H-elongata_contig71416:1827..1932Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71416 1828..1932 +
1691679704.0149477-CDS-H-elongata_contig71416:1827..19321691679704.0149477-CDS-H-elongata_contig71416:1827..1932Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71416 1828..1932 +
1622931114.3577628-CDS-H-elongata_contig71416:2285..24441622931114.3577628-CDS-H-elongata_contig71416:2285..2444Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71416 2286..2444 +
1691679704.0230591-CDS-H-elongata_contig71416:2285..24441691679704.0230591-CDS-H-elongata_contig71416:2285..2444Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71416 2286..2444 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71416.14801.1

>prot_H-elongata_contig71416.14801.1 ID=prot_H-elongata_contig71416.14801.1|Name=mRNA_H-elongata_contig71416.14801.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=159bp
QVVQKWKQLGRTLCRLLRMSDYWYFFANDHTLSNKERAERRLSVLREQIL
HMRTGGGGGFARMRSLVRAFTERYPRSIWLNFQQLMRQPKSQRCRRDMSV
CAILLSDIDNPFFRHTTADWPFPRLVDLVTDAYLMERPPLSVLYKEGDIA
PRLIGRPTS
back to top

mRNA from alignment at H-elongata_contig71416:1108..2444+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71416.14801.1 ID=mRNA_H-elongata_contig71416.14801.1|Name=mRNA_H-elongata_contig71416.14801.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1337bp|location=Sequence derived from alignment at H-elongata_contig71416:1108..2444+ (Himanthalia elongata Himel1 dioecious)
CAGGTTGTTCAGAAGTGGAAACAGCTGGGGAGGACGTTGTGCCGTCTCCT
CCGCATGTCTGATTACTGGTACTTTTTTGCCAACGACCACACGCTGTCTA
ACAAGGAGAGGGCGGAGAGGCGACTTTCTGTCCTCCGTGAGGTGAGCCGT
CCATGCGCCCAAGGACATCAGCCCGCGACTACTTCGTCGCCTTCATGCTG
AAAAGGCTTCGTCTTCGAATGTTTCGTTTGTAATCTCAGCGAGGACCAAA
ATGACGAACAACCTTCTCCGGTGGAGACCGACTCCTCAAGAGTACTTTGT
CGTAACACTTTCTTCATGGCTTATCTCTTCACGTGTGTCTTGGCCCATGC
GCACACCGCAATTGGGCGAGCAGATATTGCATATGCGTACAGGCGGCGGA
GGCGGCTTTGCGAGGATGAGATCCCTTGTTCGCGCTTTCACAGTGAGTGT
AAATTGGCATCGTGCCAGATTTTATGGCGTTCCCAATCAAGCGTCATGTC
TGGCAGGTCTTAAAATATCCAACCCACCTACAGCAGGTAAGATGAGGCCT
TGGCGCTACTACCATATATAGATCATAATCATCCTATTGCTGAAATATTA
CCTTCAAGATATTTGATAAAATGTTAGCGTCATTGCTTCCAGCGTAGATG
ATTACAAGGAGTGGGAAAAACCTGCGTCCATCGAGCCTCAACATGCGTTA
CATGTCTCTTGCTCCTCAAGGAACGATATCCACGTTCAATCTGGCTGAAT
TTTCAGCAGCTCATGCGCCAACCAAAATCCCAGCGATGCCGGCGAGATAT
GTCCGTGTGCGCTATACTACTATCGGTGAGTTGCTTCGTCACTCTCACGG
GTTGATGGCTGAAGGACCTTATCACTAGGTCGGTTATCAGCGTCACTCGT
GGTCTCAACCACGACCAACCGACGAAGCAGCACTAGAAATCAGCCCCAAT
CGGATGCTGAGACGGTCATGAAATTTCTCCTCGTGGTCACGGTGGGCACT
TGTCGTTTTGTCCAGTGCAAAACCCACATATCCGTATATTCCTATGTTGA
CCGGACGGTTCGCGCAAGGAATGCCTTATTATGTGATCCACACGGCTCAA
AATATGTTACTGCGTCCCGCGCGCACGTGCCCGTCTCCATCGCTAAATAT
TTGCGCTTTGTCCCGATCCCCTACACAGGACATCGACAACCCGTTCTTCA
GGCACACGACGGCAGACTGGCCGTTTCCTCGGCTGGTTGACCTTGTGACC
GACGCTTACTTGATGGAGAGACCACCCCTCTCCGTGCTCTACAAAGAAGG
GGACATAGCGCCAAGACTAATCGGACGACCGACGTCA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig71416:1108..2444+

>mRNA_H-elongata_contig71416.14801.1 ID=mRNA_H-elongata_contig71416.14801.1|Name=mRNA_H-elongata_contig71416.14801.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=954bp|location=Sequence derived from alignment at H-elongata_contig71416:1108..2444+ (Himanthalia elongata Himel1 dioecious)
CAGGTTGTTCAGAAGTGGAAACAGCTGGGGAGGACGTTGTGCCGTCTCCT
CCGCATGTCTGATTACTGGTACTTTTTTGCCAACGACCACACGCTGTCTA
ACAAGGAGAGGGCGGAGAGGCGACTTTCTGTCCTCCGTGAGCAGGTTGTT
CAGAAGTGGAAACAGCTGGGGAGGACGTTGTGCCGTCTCCTCCGCATGTC
TGATTACTGGTACTTTTTTGCCAACGACCACACGCTGTCTAACAAGGAGA
GGGCGGAGAGGCGACTTTCTGTCCTCCGTGAGCAGATATTGCATATGCGT
ACAGGCGGCGGAGGCGGCTTTGCGAGGATGAGATCCCTTGTTCGCGCTTT
CACACAGATATTGCATATGCGTACAGGCGGCGGAGGCGGCTTTGCGAGGA
TGAGATCCCTTGTTCGCGCTTTCACAGAACGATATCCACGTTCAATCTGG
CTGAATTTTCAGCAGCTCATGCGCCAACCAAAATCCCAGCGATGCCGGCG
AGATATGTCCGTGTGCGCTATACTACTATCGGAACGATATCCACGTTCAA
TCTGGCTGAATTTTCAGCAGCTCATGCGCCAACCAAAATCCCAGCGATGC
CGGCGAGATATGTCCGTGTGCGCTATACTACTATCGGACATCGACAACCC
GTTCTTCAGGCACACGACGGCAGACTGGCCGTTTCCTCGGCTGGTTGACC
TTGTGACCGACGCTTACTTGATGGAGAGACCACCCCTCTCCGTGCTCTAC
AAAGAAGGGGACATAGCGCCAAGACTAATCGGACGACCGACGTCAGACAT
CGACAACCCGTTCTTCAGGCACACGACGGCAGACTGGCCGTTTCCTCGGC
TGGTTGACCTTGTGACCGACGCTTACTTGATGGAGAGACCACCCCTCTCC
GTGCTCTACAAAGAAGGGGACATAGCGCCAAGACTAATCGGACGACCGAC
GTCA
back to top