mRNA_H-elongata_contig7138.14799.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7138.14799.1
Unique NamemRNA_H-elongata_contig7138.14799.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig7138.14799.1 vs. uniprot
Match: D7G479_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G479_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 3.570e-47
Identity = 99/190 (52.11%), Postives = 117/190 (61.58%), Query Frame = 1 
Query:   16 GGSKLFKGFQTTETVVRRKKPRTLSTETATPAPEXXXXXXXXXXXXPSRYPKDVWPGHKPPSQKDEGSSNRVVPHVEGGDAK--GAVVTGSELLEFFCDGCDDTIPDGIERMECVVCPDEFCLCQACYDEGELFEKKHEHELLPSSAPFHITSAAPNAEAAAAAAKSLHVTEAKKDEGDLDGGYDDDDLG 579
            G S+LFKGF+ TETVVR                 XX            RYPKD+WPGHKPP+            H+ GG+    G      E LEFFCDGCD+TIP G+ERMEC VCPDEFCLC ACYDEGE+ +K+H+HELLPS+APFH+T AAP+A AA  AAK+LHV EA   +G     YD+ DLG
Sbjct:  159 GASRLFKGFEKTETVVRXXXXXXXXXXXXX---XXXIPPSGEGEHVTHRYPKDIWPGHKPPN------------HIVGGEGANDGERAGDEEQLEFFCDGCDETIPSGVERMECAVCPDEFCLCHACYDEGEVLDKRHKHELLPSAAPFHVTRAAPSAAAALEAAKALHVAEAHHGQG---LAYDEADLG 330
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7138.14799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G479_ECTSI3.570e-4752.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7138contigH-elongata_contig7138:6678..9965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_001620.1
Exons4
Model size1591
Cds size582
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7138.14799.1prot_H-elongata_contig7138.14799.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7138 6678..8837 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931114.1660607-CDS-H-elongata_contig7138:6677..68381622931114.1660607-CDS-H-elongata_contig7138:6677..6838Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7138 6678..6838 +
1691679703.9095955-CDS-H-elongata_contig7138:6677..68381691679703.9095955-CDS-H-elongata_contig7138:6677..6838Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7138 6678..6838 +
1622931114.1875522-CDS-H-elongata_contig7138:7142..73861622931114.1875522-CDS-H-elongata_contig7138:7142..7386Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7138 7143..7386 +
1691679703.9243798-CDS-H-elongata_contig7138:7142..73861691679703.9243798-CDS-H-elongata_contig7138:7142..7386Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7138 7143..7386 +
1622931114.2040987-CDS-H-elongata_contig7138:8660..88371622931114.2040987-CDS-H-elongata_contig7138:8660..8837Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7138 8661..8837 +
1691679703.945356-CDS-H-elongata_contig7138:8660..88371691679703.945356-CDS-H-elongata_contig7138:8660..8837Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7138 8661..8837 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931114.2209034-UTR-H-elongata_contig7138:8837..95111622931114.2209034-UTR-H-elongata_contig7138:8837..9511Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7138 8838..9511 +
1691679703.9576614-UTR-H-elongata_contig7138:8837..95111691679703.9576614-UTR-H-elongata_contig7138:8837..9511Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7138 8838..9511 +
1622931114.2366338-UTR-H-elongata_contig7138:9631..99651622931114.2366338-UTR-H-elongata_contig7138:9631..9965Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7138 9632..9965 +
1691679703.9680037-UTR-H-elongata_contig7138:9631..99651691679703.9680037-UTR-H-elongata_contig7138:9631..9965Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7138 9632..9965 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7138.14799.1

>prot_H-elongata_contig7138.14799.1 ID=prot_H-elongata_contig7138.14799.1|Name=mRNA_H-elongata_contig7138.14799.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=194bp
GRVGAGGSKLFKGFQTTETVVRRKKPRTLSTETATPAPETEALDTSAQAP
APSRYPKDVWPGHKPPSQKDEGSSNRVVPHVEGGDAKGAVVTGSELLEFF
CDGCDDTIPDGIERMECVVCPDEFCLCQACYDEGELFEKKHEHELLPSSA
PFHITSAAPNAEAAAAAAKSLHVTEAKKDEGDLDGGYDDDDLG*
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mRNA from alignment at H-elongata_contig7138:6678..9965+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7138.14799.1 ID=mRNA_H-elongata_contig7138.14799.1|Name=mRNA_H-elongata_contig7138.14799.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3288bp|location=Sequence derived from alignment at H-elongata_contig7138:6678..9965+ (Himanthalia elongata Himel1 dioecious)
GGGAGAGTAGGCGCGGGGGGGAGTAAACTCTTCAAGGGCTTCCAGACCAC
GGAGACCGTGGTGAGAAGGAAGAAGCCGCGGACACTTTCCACGGAAACAG
CAACGCCAGCACCGGAGACGGAGGCACTAGATACGTCGGCTCAAGCTCCA
GCGCCGAGCAGGTGGGGGCGTTCGGAAGGTGTGCCATCGCTGAAAACTCT
GCTCTCGAGGTGTTCCGCAAAGGGTGGTGCTGTCGATAAATAAATCAAAG
GCGCCATGTGTGCGGAGCGAATGTGGTACTCTGCTGTGTGTATGGCGATT
GTGTTAGCCCTCGACACCTTGAGCGCCGTCGCCCAGGACCCACGCAATTT
TCCAGACCCAAAACATACACGCACATCTCGTGAGGGTTTACCCCGTAACT
TCCCCTCCCCCACCGCGAGAGTGATCCTTATTCACGCTTGGTTGAAAACT
GTTCTCGGTCCACAGGTATCCAAAAGACGTGTGGCCAGGGCACAAGCCCC
CGAGCCAAAAGGACGAAGGGAGTTCCAACCGAGTAGTACCTCACGTCGAG
GGGGGCGATGCAAAGGGTGCTGTCGTTACTGGCAGTGAACTGCTGGAGTT
TTTCTGCGACGGGTGCGACGACACCATACCCGACGGAATCGAGCGCATGG
AGTGCGTCGTGTGCCCGGATGAATTCTGCCTGTGTCAAGCGTGCTACGAC
GAGGGAGAGGTGCTATGTTGTTTGTGTGTGTGTGGGTATGTGTAATTATT
AAATTACACATAACTGCGCAGTCCGGCTATGTCATGCTAGCACTTCTAGG
CTACTCTCGCATTGATCCTCTCAATGGGGGATTCAACAACCATATTTGCT
ACTCTCTCTACATTTCGTGTCTAAGCCATTAATAATCAATAATCAATAAC
CCTCTCCTCTCCTCGCTTCCTGCGTGTATGCGTTTTTATTAAAGTGCACA
TAAGCACGCAACCCGTCCCTGCCATGCTAGTCAGTGTAGGCTTTTCGCAT
TAGTCCTTAGTCCTCCCCAAGGGAACCAATAATACTTTTTACGAAGGCCT
CTGATCAGGCGTGACATAGGGGAGACACTCTATCTAAAGGTCTCAACGCC
TTGCGCTTCCCTTTCTTCCTTCGTGTTCTCTATATAGCTTCGGTCGACAC
ATAATTGGACTAGTCAGTCCTCTCTCGTGTGTGTGTGAGTGAGTGAGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GATTGAAATAATCATAGTTTTCGCGCGCTCTTGTTTATATAGTTTTGAGC
TTTCTCACTTTGGCCCCGTCCATAGCACGTCGGGTTGGTGCACTTTCTGT
TTGTAGTTGAGGCGGGATTATCACAGATCGAGAACACCAGGCATCTGCTG
CGCGAATATGATACTAAGTATATATACTATACTATTCTATACTATATTAT
ACTATACTATACTATACTATACTAGGTGTATCGTTTTTCTGTCCTCGCTT
ATGCGGTGAAGCGAGGCGGATGGGTGGGTGGGTGTGCGACCCAACATATT
TTGGTGCAACGCGCGCTTGGGGAGCAGTTCGCTCCCGGAGTAATGCCCGA
CCTTCCCAACCGTCTGATTGATATCGATGGATTGATAAGTGCGCCGGGTT
TCTCCTGCTTATTTGTATCGCGCAGCGTTTTAGTCAAGATCTGTCCCCTT
GTCGAAGGATGACACAATAACTAATACCAGTACATTAGTAATTCTCAAAC
CCCACATGCCGCCTCATACTATGATCCCCTCTTCTGTCCTCCCGAGGAGT
CATAGTCAATGATCTAACAGCTACGTCATGTCAAACATGAGCACGCCCTC
CCCCCTGATGTCCTTTCATTGAAAATATATATCGCGTGAATATTCTCGCT
GCATGTCGTATAACGTGACGTCTTATCTTATATCGCGTCGTTCGTGCGTG
GCCGTGTCGGTCGTCTTTCCCCGTTCGTTTCAGCTTTTTGAAAAGAAGCA
CGAGCACGAGCTGCTCCCGTCGTCCGCACCCTTCCACATCACGAGCGCCG
CCCCGAACGCCGAGGCAGCCGCCGCAGCGGCGAAATCCTTGCACGTGACG
GAGGCGAAAAAGGATGAAGGAGATCTCGACGGGGGCTACGACGACGACGA
CCTGGGATGACTTTTTGTCCACCCCCCCCTCCCCACTTGTTCTGTTGATC
AATCAATCAATGAATCGATCGAGACACAGCCCCCTCACCCTCCCCCAAAA
GGCGTGAAGCGAAGAGGGGTTGGCTGTTTGACGGGCAATATACATAAAAT
ATTTTCAGAGTTCCTATATCTGGAAGTACTAAAACCCACTGGGTGCTCAG
CAATCATGCACAGAGGACGTTCGTACGAATGGGCAATACGGCAGTAGAGT
TGGTCATTTATCGGCGTCGACACACGCACGGATGGATGCCGATGATGCAG
CACGGTGTATTTTGCCCCTTTTTCCCTTGGACGCCGATGCGCCTACACGT
CAGCAAGCGCAGAGTGCTTGAGTGCTTGCAGCGGAGTCGATTAATCTGAT
ATGATATAATAGTTGATGTTGAAGAAAGACGCACGCAGTATATTTTTCTT
TCCCCGCGAGTGCTGGATCGGTGTCTTTTCGAAAGGCGTGCCAGAGTGCG
ATAGATTGCTCTAGTAGTGGCATGGTCCTGTGGAGTACATCACGATTTTA
AGCACGCATTTGTCGCTCTCTTTTTCCTGTCGCTTTGTCGTCCTTTTTTG
CCTAACGGGCTTGTGGTTTGCCTTCGGCGGAGGGTCAGTTAGTTTGCTGT
GAACCGTTGTAGGCGCTCTTCGTAGGTTGTATTATCGNNNNNNNNNNCAA
GCGTGCTCGTGCTGGCTCTCTCGCCACAGTTGAGTATCCACAAGTAGCGC
GTGCACCTTGTTGTCGGATGCCATATTGCTTTTCTCTGGGGTAACGATTG
TTTTTCGGAGGCGTTTTTTTTTATGGGGTTATCCTGTCGAATCCTTATTT
CCGCACGCTGAGTTACTGGGATTTACGCTTTGGCCTGCTGCGATATCACT
TTTTTTACCTACTTGATTCTTGAGTCGAATGGTCACATTTGCCTGACTTT
CTGAATTCTAACGGCATCCATGTATGGATATTGTGGGCGGCATAATAAGG
CCCCTTGATGAATAGTCGATTGGTTTGATGAATAGTCGATTGATATTGTG
GACGGCATAATAAGGTCCCTTGACGAATAGTCGGTTGATGAATAGTCCCT
TGATGAATAGTCGATTGATAAAAAAAACTATGCTTTCT
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Coding sequence (CDS) from alignment at H-elongata_contig7138:6678..9965+

>mRNA_H-elongata_contig7138.14799.1 ID=mRNA_H-elongata_contig7138.14799.1|Name=mRNA_H-elongata_contig7138.14799.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1164bp|location=Sequence derived from alignment at H-elongata_contig7138:6678..9965+ (Himanthalia elongata Himel1 dioecious)
GGGAGAGTAGGCGCGGGGGGGAGTAAACTCTTCAAGGGCTTCCAGACCAC
GGAGACCGTGGTGAGAAGGAAGAAGCCGCGGACACTTTCCACGGAAACAG
CAACGCCAGCACCGGAGACGGAGGCACTAGATACGTCGGCTCAAGCTCCA
GCGCCGAGCAGGGGAGAGTAGGCGCGGGGGGGAGTAAACTCTTCAAGGGC
TTCCAGACCACGGAGACCGTGGTGAGAAGGAAGAAGCCGCGGACACTTTC
CACGGAAACAGCAACGCCAGCACCGGAGACGGAGGCACTAGATACGTCGG
CTCAAGCTCCAGCGCCGAGCAGGTATCCAAAAGACGTGTGGCCAGGGCAC
AAGCCCCCGAGCCAAAAGGACGAAGGGAGTTCCAACCGAGTAGTACCTCA
CGTCGAGGGGGGCGATGCAAAGGGTGCTGTCGTTACTGGCAGTGAACTGC
TGGAGTTTTTCTGCGACGGGTGCGACGACACCATACCCGACGGAATCGAG
CGCATGGAGTGCGTCGTGTGCCCGGATGAATTCTGCCTGTGTCAAGCGTG
CTACGACGAGGGAGAGGTATCCAAAAGACGTGTGGCCAGGGCACAAGCCC
CCGAGCCAAAAGGACGAAGGGAGTTCCAACCGAGTAGTACCTCACGTCGA
GGGGGGCGATGCAAAGGGTGCTGTCGTTACTGGCAGTGAACTGCTGGAGT
TTTTCTGCGACGGGTGCGACGACACCATACCCGACGGAATCGAGCGCATG
GAGTGCGTCGTGTGCCCGGATGAATTCTGCCTGTGTCAAGCGTGCTACGA
CGAGGGAGAGCTTTTTGAAAAGAAGCACGAGCACGAGCTGCTCCCGTCGT
CCGCACCCTTCCACATCACGAGCGCCGCCCCGAACGCCGAGGCAGCCGCC
GCAGCGGCGAAATCCTTGCACGTGACGGAGGCGAAAAAGGATGAAGGAGA
TCTCGACGGGGGCTACGACGACGACGACCTGGGATGACTTTTTGAAAAGA
AGCACGAGCACGAGCTGCTCCCGTCGTCCGCACCCTTCCACATCACGAGC
GCCGCCCCGAACGCCGAGGCAGCCGCCGCAGCGGCGAAATCCTTGCACGT
GACGGAGGCGAAAAAGGATGAAGGAGATCTCGACGGGGGCTACGACGACG
ACGACCTGGGATGA
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