mRNA_H-elongata_contig71363.14797.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71363.14797.1
Unique NamemRNA_H-elongata_contig71363.14797.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig71363.14797.1 vs. uniprot
Match: A0A6H5JS96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS96_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 1.080e-42
Identity = 65/107 (60.75%), Postives = 83/107 (77.57%), Query Frame = 1
Query:    4 VCFDPHLQGLRGQHIEWTGVDGGWYALVKDNEDDLQTNVRTTAPLSSDFPDRQFITGMAILSHGHSLVVEVKEPYTIDTPGCSHNVSPCLADGGLSVSVDGELADFL 324
            VC DPH+QGLRGQ I+W+GVDGGWY+L+KD+  D+  NVR TAPL  +FPDRQ +T +A+LS GHS+V+EV+ PYT+ T GC   VSPCLA+GGL + VD +  D L
Sbjct:  111 VCGDPHMQGLRGQRIDWSGVDGGWYSLIKDDNIDININVRLTAPLPDEFPDRQLMTSLAVLSKGHSVVIEVENPYTVVTNGCPEGVSPCLANGGLRIIVDSQQVDEL 217          
BLAST of mRNA_H-elongata_contig71363.14797.1 vs. uniprot
Match: D8LMW2_ECTSI (Imm upregulated 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW2_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 2.770e-42
Identity = 66/108 (61.11%), Postives = 83/108 (76.85%), Query Frame = 1
Query:    1 DVCFDPHLQGLRGQHIEWTGVDGGWYALVKDNEDDLQTNVRTTAPLSSDFPDRQFITGMAILSHGHSLVVEVKEPYTIDTPGCSHNVSPCLADGGLSVSVDGELADFL 324
            D+  DPH++GLRGQ I W+GVDGGWY+LVKD+  DL  NVR TAPL  +FPDRQ +T +AI+S G+S+V+EV+ PYTI T GC   VSPCLA+GGL + VDG+  D L
Sbjct:   11 DMWGDPHMRGLRGQRINWSGVDGGWYSLVKDDHADLSINVRVTAPLPDEFPDRQLMTSLAIMSEGYSVVIEVENPYTIVTGGCPEGVSPCLANGGLRIIVDGQEVDEL 118          
BLAST of mRNA_H-elongata_contig71363.14797.1 vs. uniprot
Match: D7G4E8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E8_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 1.060e-40
Identity = 61/105 (58.10%), Postives = 82/105 (78.10%), Query Frame = 1
Query:    1 DVCFDPHLQGLRGQHIEWTGVDGGWYALVKDNEDDLQTNVRTTAPLSSDFPDRQFITGMAILSHGHSLVVEVKEPYTID-TPGCSHNVS-PCLADGGLSVSVDGE 309
            D+C DPH++GLRGQHI+W GVDGGWYA +KD++ DL  NVR TAPL  +FP+RQ +TG+++++  HSL++EV  PY  D   GC   +S PCLA+GGLSV+V+GE
Sbjct:    6 DICDDPHMKGLRGQHIDWFGVDGGWYAFIKDDDIDLHVNVRLTAPLPEEFPERQLVTGLSVIAGEHSLILEVTNPYDTDINGGCLDGMSTPCLANGGLSVTVNGE 110          
BLAST of mRNA_H-elongata_contig71363.14797.1 vs. uniprot
Match: A0A6H5JP37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP37_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 9.580e-40
Identity = 61/107 (57.01%), Postives = 79/107 (73.83%), Query Frame = 1
Query:    4 VCFDPHLQGLRGQHIEWTGVDGGWYALVKDNEDDLQTNVRTTAPLSSDFPDRQFITGMAILSHGHSLVVEVKEPYTIDTPGCSHNVSPCLADGGLSVSVDGELADFL 324
            +  DPH++GL GQ + W+G DGGWY+L+KD+  DL  NVR TAPL  +FPDRQ +T +AI+S G+S+V+EVK PYT DT GC  +VSPC A+GGL + VDG   D L
Sbjct:   17 IWGDPHMRGLLGQRVNWSGFDGGWYSLIKDDNADLHINVRVTAPLPDEFPDRQLMTSLAIMSEGYSVVIEVKNPYTTDTGGCPEDVSPCHANGGLRIIVDGHEVDEL 123          
BLAST of mRNA_H-elongata_contig71363.14797.1 vs. uniprot
Match: A0A6H5JNZ2_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNZ2_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 1.680e-35
Identity = 62/104 (59.62%), Postives = 80/104 (76.92%), Query Frame = 1
Query:    4 VCFDPHLQGLRGQHIEWTGVDGGWYALVKDNEDDLQTNVRTTAPLSSDFPDRQFITGMAILSHGHSLVVEVKEPYTID-TPGCSH-NVSPCLADGGLSVSVDGE 309
            +C DPH++GL GQ I+W GVDG WY+ VKD + DL+ NVR TAPL  DFPDRQ +TG++++S GHSLV+EV  PY+ D   GC   + +PCLA+GGLSV+VDGE
Sbjct:  401 ICDDPHMKGLLGQSIDWFGVDGEWYSFVKDPDMDLRVNVRLTAPLPDDFPDRQLVTGLSVISEGHSLVLEVTNPYSTDLNDGCPDGSPTPCLANGGLSVTVDGE 504          
BLAST of mRNA_H-elongata_contig71363.14797.1 vs. uniprot
Match: A0A6H5JP35_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP35_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 3.250e-30
Identity = 57/103 (55.34%), Postives = 74/103 (71.84%), Query Frame = 1
Query:    7 CFDPHLQGLRGQHIEWTGVDGGWYALVKDNEDDLQTNVRTTAPLSSDFPDRQFITGMAILSHGHSLVVEVKEPYTIDTPG-CSHNV-SPCLADGGLSVSVDGE 309
            C D +   L GQ I+W G+DGGWY+LV+D + DL  NVR TAP   +FPDRQ +TG+++++ GHSLV+EV +PY  DT G C     +PCLA+GGLSV VDGE
Sbjct:   54 CTDTYAV-LLGQSIDWFGIDGGWYSLVQDPDIDLNVNVRLTAPPPEEFPDRQLVTGLSVMAGGHSLVIEVTKPYDTDTAGGCPDGAPAPCLANGGLSVIVDGE 155          
BLAST of mRNA_H-elongata_contig71363.14797.1 vs. uniprot
Match: A0A6H5KYD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYD0_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 8.070e-27
Identity = 52/103 (50.49%), Postives = 68/103 (66.02%), Query Frame = 1
Query:    4 VCFDPHLQGLRGQHIEWTGVDGGWYALVKDNEDDLQTNVRTTAPLSSDFPDRQFITGMAILS-HGHSLVVEVKEPYTIDTPGCSHNVSPCLADGGLSVSVDGE 309
            V  D H+ GL GQ I+W G D GWY L+ ++E   Q N R TAP+  +FP RQ ++G++I S  G SLVVEVK P T +T GCS   +PCLA+G L + VDG+
Sbjct:    7 VSGDSHMVGLLGQEIDWYGEDSGWYCLLVNSE--FQVNARVTAPMPDEFPTRQLVSGVSIRSAEGPSLVVEVKNPITTETEGCSSTSAPCLAEGALRILVDGD 107          
BLAST of mRNA_H-elongata_contig71363.14797.1 vs. uniprot
Match: A0A6H5KHZ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHZ2_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 2.710e-23
Identity = 42/95 (44.21%), Postives = 60/95 (63.16%), Query Frame = 1
Query:    1 DVCFDPHLQGLRGQHIEWTGVDGGWYALVKDNEDDLQTNVRTTAPLSSDFPDRQFITGMAI----------------------LSHGHSLVVEVK 219
            ++C DPH++GL GQ+I+W GVDGGWY+ V+D + DL  NVR TAPL  +FPDRQ +TG+++                      ++ GHSLV+EV+
Sbjct:   39 NLCLDPHMKGLFGQNIDWFGVDGGWYSFVRDPDIDLNVNVRLTAPLPEEFPDRQLVTGLSVVXXXXXXXXXXXXXXXXXXXXXMARGHSLVIEVR 133          
BLAST of mRNA_H-elongata_contig71363.14797.1 vs. uniprot
Match: D7G544_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G544_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 1.230e-22
Identity = 47/107 (43.93%), Postives = 69/107 (64.49%), Query Frame = 1
Query:    4 VCFDPHLQGLRGQHIEWTGVDGGWYALVKDNEDDLQTNVRTTAPLSSDFPDRQFITGMAILSHG-HSLVVEVKEPYTIDTPGCSHNV-----SPCLADGGLSVSVDG 306
            +  DPHL GLRGQH +W G DGGWYA +    D LQ N+R T+ L + FP+RQ +TG+A+++ G H++  ++ +P  +  P C   V     +PCL +GGL ++VDG
Sbjct:  242 IWDDPHLTGLRGQHFDWYGQDGGWYAFLS-TPDQLQMNLRVTSHLPATFPERQLVTGVALVTEGGHTITADIVDPLDL-APTCHGTVDAVGSAPCLVNGGLRITVDG 346          
BLAST of mRNA_H-elongata_contig71363.14797.1 vs. uniprot
Match: A0A6H5KRS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRS2_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.850e-20
Identity = 46/109 (42.20%), Postives = 71/109 (65.14%), Query Frame = 1
Query:    4 VCFDPHLQGLRGQHIEWTGVDGGWYALVKDNEDDLQTNVRTTAPLSSDFPDRQFITGMAILSHG-----HSLVVEVKEPYTIDTPGCSHNVSPCLADGGLSVSVDGELA 315
             C DPH+ G  GQ  ++TG DG WY L+ D    +  N+R TAP+ S  PD  +ITG+++++       HS+V+ VK+P+++++  C   V+PCLA+G LSVS+DG+ A
Sbjct:   54 ACGDPHMTGFHGQKFDFTGDDGEWYCLISDLPS-MNLNMRVTAPVPSR-PDITYITGISLITQDGNGLDHSVVITVKDPHSLES-SCPAGVTPCLANGALSVSLDGKEA 159          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71363.14797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5JS96_9PHAE1.080e-4260.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMW2_ECTSI2.770e-4261.11Imm upregulated 3 n=1 Tax=Ectocarpus siliculosus T... [more]
D7G4E8_ECTSI1.060e-4058.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JP37_9PHAE9.580e-4057.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNZ2_9PHAE1.680e-3559.62VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JP35_9PHAE3.250e-3055.34Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYD0_9PHAE8.070e-2750.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHZ2_9PHAE2.710e-2344.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G544_ECTSI1.230e-2243.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRS2_9PHAE1.850e-2042.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71363contigH-elongata_contig71363:2847..3170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931113.9133837-CDS-H-elongata_contig71363:2846..31701622931113.9133837-CDS-H-elongata_contig71363:2846..3170Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71363 2847..3170 +
1691679703.8243897-CDS-H-elongata_contig71363:2846..31701691679703.8243897-CDS-H-elongata_contig71363:2846..3170Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71363 2847..3170 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71363.14797.1prot_H-elongata_contig71363.14797.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71363 2847..3170 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71363.14797.1

>prot_H-elongata_contig71363.14797.1 ID=prot_H-elongata_contig71363.14797.1|Name=mRNA_H-elongata_contig71363.14797.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
DVCFDPHLQGLRGQHIEWTGVDGGWYALVKDNEDDLQTNVRTTAPLSSDF
PDRQFITGMAILSHGHSLVVEVKEPYTIDTPGCSHNVSPCLADGGLSVSV
DGELADFL
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mRNA from alignment at H-elongata_contig71363:2847..3170+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71363.14797.1 ID=mRNA_H-elongata_contig71363.14797.1|Name=mRNA_H-elongata_contig71363.14797.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=324bp|location=Sequence derived from alignment at H-elongata_contig71363:2847..3170+ (Himanthalia elongata Himel1 dioecious)
GACGTGTGCTTCGACCCGCACTTGCAAGGACTCCGCGGACAACACATTGA ATGGACTGGGGTCGACGGTGGATGGTACGCCCTAGTCAAAGACAACGAAG ATGATCTTCAGACCAACGTGCGCACCACCGCGCCTCTTTCCAGTGATTTC CCCGACCGTCAGTTCATCACGGGTATGGCCATTCTGTCGCACGGACACTC TCTTGTCGTCGAAGTGAAGGAGCCCTACACCATCGACACTCCTGGCTGTT CCCACAACGTTTCACCCTGCCTGGCGGACGGCGGTCTCAGTGTCTCTGTG GACGGGGAGCTGGCGGACTTCCTG
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Coding sequence (CDS) from alignment at H-elongata_contig71363:2847..3170+

>mRNA_H-elongata_contig71363.14797.1 ID=mRNA_H-elongata_contig71363.14797.1|Name=mRNA_H-elongata_contig71363.14797.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig71363:2847..3170+ (Himanthalia elongata Himel1 dioecious)
GACGTGTGCTTCGACCCGCACTTGCAAGGACTCCGCGGACAACACATTGA
ATGGACTGGGGTCGACGGTGGATGGTACGCCCTAGTCAAAGACAACGAAG
ATGATCTTCAGACCAACGTGCGCACCACCGCGCCTCTTTCCAGTGATTTC
CCCGACCGTCAGTTCATCACGGGTATGGCCATTCTGTCGCACGGACACTC
TCTTGTCGTCGAAGTGAAGGAGCCCTACACCATCGACACTCCTGGCTGTT
CCCACAACGTTTCACCCTGCCTGGCGGACGGCGGTCTCAGTGTCTCTGTG
GACGGGGAGCTGGCGGACTTCCTGGACGTGTGCTTCGACCCGCACTTGCA
AGGACTCCGCGGACAACACATTGAATGGACTGGGGTCGACGGTGGATGGT
ACGCCCTAGTCAAAGACAACGAAGATGATCTTCAGACCAACGTGCGCACC
ACCGCGCCTCTTTCCAGTGATTTCCCCGACCGTCAGTTCATCACGGGTAT
GGCCATTCTGTCGCACGGACACTCTCTTGTCGTCGAAGTGAAGGAGCCCT
ACACCATCGACACTCCTGGCTGTTCCCACAACGTTTCACCCTGCCTGGCG
GACGGCGGTCTCAGTGTCTCTGTGGACGGGGAGCTGGCGGACTTCCTG
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