mRNA_H-elongata_contig71189.14780.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71189.14780.1
Unique NamemRNA_H-elongata_contig71189.14780.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig71189.14780.1 vs. uniprot
Match: D7FPI4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI4_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 3.110e-31
Identity = 66/74 (89.19%), Postives = 68/74 (91.89%), Query Frame = 1
Query:    1 AREEMEFAAESKETTYFDEEASAAKEAVEEAVGLFEEVLASVDVKKRTEIMRQSGLRVEQLKAELDQLLESDDH 222
            AREEME+A ESKETTYFDEEA+AAKEAVEEAV LFEEVL SVD KKRTEIMR SGLRVEQLKAELDQLL SDDH
Sbjct:   11 AREEMEYAEESKETTYFDEEAAAAKEAVEEAVALFEEVLRSVDEKKRTEIMRSSGLRVEQLKAELDQLLISDDH 84          
BLAST of mRNA_H-elongata_contig71189.14780.1 vs. uniprot
Match: A0A7S2CH79_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CH79_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 6.420e-15
Identity = 43/74 (58.11%), Postives = 56/74 (75.68%), Query Frame = 1
Query:    1 AREEMEFAAESKETTYFDEEASAAKEAVEEAVGLFEEVLASVDVKKRTEIMRQSGLRVEQLKAELDQLLESDDH 222
            AREE+E A ESKETTY+DEEA  A+EAVE A+  + ++L S++   R E  R +GL++EQLKAEL+ LL SDDH
Sbjct:   26 AREEIEMAEESKETTYYDEEAEIAQEAVEAALAEYGDILNSLEEPARGEFQRGNGLKMEQLKAELEILLHSDDH 99          
BLAST of mRNA_H-elongata_contig71189.14780.1 vs. uniprot
Match: A0A8B8MI30_ABRPR (uncharacterized protein LOC113873100 n=1 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8MI30_ABRPR)

HSP 1 Score: 71.6 bits (174), Expect = 5.140e-14
Identity = 41/68 (60.29%), Postives = 51/68 (75.00%), Query Frame = 1
Query:    1 AREEMEFAAESKETTYFDEEASAAKEAVEEAVGLFEEVLASVDVKKRTEIMRQSGLRVEQLKAELDQL 204
            AREE+E A ESK+T YFDEEA  A+ AV E VGLFEE+LA +  ++R  + R  GL++EQLKAEL QL
Sbjct:   88 AREEIEMALESKDTVYFDEEAECARAAVNEVVGLFEELLAKLPERERGALQRSMGLKIEQLKAELQQL 155          
BLAST of mRNA_H-elongata_contig71189.14780.1 vs. uniprot
Match: A0A371F7D8_MUCPR (Uncharacterized protein (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371F7D8_MUCPR)

HSP 1 Score: 69.3 bits (168), Expect = 3.740e-13
Identity = 38/68 (55.88%), Postives = 52/68 (76.47%), Query Frame = 1
Query:    1 AREEMEFAAESKETTYFDEEASAAKEAVEEAVGLFEEVLASVDVKKRTEIMRQSGLRVEQLKAELDQL 204
            AREE+E A ESK+T YFDEEA  A+ AV+E +G+FEE+LA +  ++R  + R  GL++EQLKAE+ QL
Sbjct:   83 AREEIEMALESKDTVYFDEEAECARAAVKEVLGMFEELLAKLPERERGALQRSMGLKIEQLKAEIQQL 150          
BLAST of mRNA_H-elongata_contig71189.14780.1 vs. uniprot
Match: UPI00125E2BE0 (uncharacterized protein LOC116014478 n=1 Tax=Ipomoea triloba TaxID=35885 RepID=UPI00125E2BE0)

HSP 1 Score: 68.9 bits (167), Expect = 6.370e-13
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = 1
Query:    1 AREEMEFAAESKETTYFDEEASAAKEAVEEAVGLFEEVLASVDVKKRTEIMRQSGLRVEQLKAELDQLLE 210
            AREE+E A ESKET YFDEEA  A+ AV+E +GL+E +LA V+  ++  I R  GL++EQLKAEL+QL E
Sbjct:   93 AREEIESAMESKETVYFDEEAECARAAVKEVLGLYEGLLAKVNENEKGVIQRSMGLKIEQLKAELEQLNE 162          
BLAST of mRNA_H-elongata_contig71189.14780.1 vs. uniprot
Match: I3T868_LOTJA (Uncharacterized protein n=1 Tax=Lotus japonicus TaxID=34305 RepID=I3T868_LOTJA)

HSP 1 Score: 67.8 bits (164), Expect = 1.430e-12
Identity = 39/68 (57.35%), Postives = 49/68 (72.06%), Query Frame = 1
Query:    1 AREEMEFAAESKETTYFDEEASAAKEAVEEAVGLFEEVLASVDVKKRTEIMRQSGLRVEQLKAELDQL 204
            AREE++ A ESKET YF+EEA  A+ AV E VG+FE +LA +  K R  + R  GL++EQLKAEL QL
Sbjct:   82 AREEIDMALESKETAYFNEEAECARAAVNEVVGMFERLLARLPEKDRAALQRSMGLKIEQLKAELQQL 149          
BLAST of mRNA_H-elongata_contig71189.14780.1 vs. uniprot
Match: A0A484LV25_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484LV25_9ASTE)

HSP 1 Score: 65.9 bits (159), Expect = 1.890e-12
Identity = 40/70 (57.14%), Postives = 51/70 (72.86%), Query Frame = 1
Query:    1 AREEMEFAAESKETTYFDEEASAAKEAVEEAVGLFEEVLASVDVKKRTEIMRQSGLRVEQLKAELDQLLE 210
            AREE+E A ESKET YFDEEA  A++AV E + L+E +L  +  K+R  I R  GL++EQLKAEL+QL E
Sbjct:   20 AREEIESAMESKETLYFDEEAECARKAVNEVLELYEGLLEKLPEKEREAIQRSMGLKIEQLKAELEQLNE 89          
BLAST of mRNA_H-elongata_contig71189.14780.1 vs. uniprot
Match: A0A2R6RNT0_ACTCC (Uncharacterized protein n=1 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6RNT0_ACTCC)

HSP 1 Score: 67.0 bits (162), Expect = 3.770e-12
Identity = 39/70 (55.71%), Postives = 53/70 (75.71%), Query Frame = 1
Query:    1 AREEMEFAAESKETTYFDEEASAAKEAVEEAVGLFEEVLASVDVKKRTEIMRQSGLRVEQLKAELDQLLE 210
            AREE+E A ESKET YF+EEA  A++AV+E + ++E +LA + VK++  I R  GL++EQLKAEL QL E
Sbjct:   95 AREEIETALESKETVYFNEEAECARDAVKEVLDMYEGLLAKLQVKEKGAIQRSMGLKIEQLKAELQQLNE 164          
BLAST of mRNA_H-elongata_contig71189.14780.1 vs. uniprot
Match: A0A2G2ZQ26_CAPAN (Uncharacterized protein n=1 Tax=Capsicum annuum TaxID=4072 RepID=A0A2G2ZQ26_CAPAN)

HSP 1 Score: 66.6 bits (161), Expect = 4.630e-12
Identity = 39/70 (55.71%), Postives = 52/70 (74.29%), Query Frame = 1
Query:    1 AREEMEFAAESKETTYFDEEASAAKEAVEEAVGLFEEVLASVDVKKRTEIMRQSGLRVEQLKAELDQLLE 210
            AREE+E A ESKET YF+EEA  A++AV+E + L++E+L  V   ++  I R  GL++EQLKAELDQL E
Sbjct:   89 AREEIESAMESKETVYFNEEADCARDAVKEVLDLYQELLGKVSESEKGVIQRSMGLKIEQLKAELDQLNE 158          
BLAST of mRNA_H-elongata_contig71189.14780.1 vs. uniprot
Match: UPI001C4FFF6E (embryogenesis-like protein n=1 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C4FFF6E)

HSP 1 Score: 64.3 bits (155), Expect = 6.760e-12
Identity = 36/68 (52.94%), Postives = 50/68 (73.53%), Query Frame = 1
Query:    1 AREEMEFAAESKETTYFDEEASAAKEAVEEAVGLFEEVLASVDVKKRTEIMRQSGLRVEQLKAELDQL 204
            AREE+E A ESKET YFDEEA +A+EA +  + +F+ +LA +   +R  + R  GL++EQLKAEL+QL
Sbjct:   15 AREEIEMALESKETVYFDEEAESAREAAKVVLDMFQGLLAKLPENERASLQRSMGLKIEQLKAELEQL 82          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71189.14780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPI4_ECTSI3.110e-3189.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2CH79_9STRA6.420e-1558.11Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A8B8MI30_ABRPR5.140e-1460.29uncharacterized protein LOC113873100 n=1 Tax=Abrus... [more]
A0A371F7D8_MUCPR3.740e-1355.88Uncharacterized protein (Fragment) n=1 Tax=Mucuna ... [more]
UPI00125E2BE06.370e-1358.57uncharacterized protein LOC116014478 n=1 Tax=Ipomo... [more]
I3T868_LOTJA1.430e-1257.35Uncharacterized protein n=1 Tax=Lotus japonicus Ta... [more]
A0A484LV25_9ASTE1.890e-1257.14Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]
A0A2R6RNT0_ACTCC3.770e-1255.71Uncharacterized protein n=1 Tax=Actinidia chinensi... [more]
A0A2G2ZQ26_CAPAN4.630e-1255.71Uncharacterized protein n=1 Tax=Capsicum annuum Ta... [more]
UPI001C4FFF6E6.760e-1252.94embryogenesis-like protein n=1 Tax=Macadamia integ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71189contigH-elongata_contig71189:543..1658 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score66.6
Seed ortholog evalue5.2e-09
Seed eggNOG ortholog3885.XP_007143589.1
EggNOG OGs2CMFC@1,2S3XZ@2759,37W2K@33090,3GKBR@35493,4JQIR@91835
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_000670.1
Exons3
Model size225
Cds size213
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71189.14780.1prot_H-elongata_contig71189.14780.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71189 543..1646 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931111.730701-CDS-H-elongata_contig71189:542..6061622931111.730701-CDS-H-elongata_contig71189:542..606Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71189 543..606 -
1691679702.904213-CDS-H-elongata_contig71189:542..6061691679702.904213-CDS-H-elongata_contig71189:542..606Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71189 543..606 -
1622931111.7448392-CDS-H-elongata_contig71189:1038..11111622931111.7448392-CDS-H-elongata_contig71189:1038..1111Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71189 1039..1111 -
1691679702.9238956-CDS-H-elongata_contig71189:1038..11111691679702.9238956-CDS-H-elongata_contig71189:1038..1111Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71189 1039..1111 -
1622931111.7576244-CDS-H-elongata_contig71189:1570..16461622931111.7576244-CDS-H-elongata_contig71189:1570..1646Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71189 1571..1646 -
1691679702.9330812-CDS-H-elongata_contig71189:1570..16461691679702.9330812-CDS-H-elongata_contig71189:1570..1646Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71189 1571..1646 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931111.7735636-UTR-H-elongata_contig71189:1646..16581622931111.7735636-UTR-H-elongata_contig71189:1646..1658Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71189 1647..1658 -
1691679702.9429972-UTR-H-elongata_contig71189:1646..16581691679702.9429972-UTR-H-elongata_contig71189:1646..1658Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71189 1647..1658 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71189.14780.1

>prot_H-elongata_contig71189.14780.1 ID=prot_H-elongata_contig71189.14780.1|Name=mRNA_H-elongata_contig71189.14780.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
MEFAAESKETTYFDEEASAAKEAVEEAVGLFEEVLASVDVKKRTEIMRQS
GLRVEQLKAELDQLLESDDH*
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mRNA from alignment at H-elongata_contig71189:543..1658-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71189.14780.1 ID=mRNA_H-elongata_contig71189.14780.1|Name=mRNA_H-elongata_contig71189.14780.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1116bp|location=Sequence derived from alignment at H-elongata_contig71189:543..1658- (Himanthalia elongata Himel1 dioecious)
GCACGAGAGGAGATGGAGTTCGCGGCTGAGAGTAAGGAAACGACCTACTT CGACGAGGAGGCTTCTGCGGCAAAGGAAGCGGTCGAGGGTGAGCGACCGA CAGCTGAAGGTCGCCTGCCGGTCGCTCTAGAGAAGGCTACGCTCGAAAGC TGGGGGTGGTAATAGTGGAACCTTCCTTGTTTATTTAACTCTCGCGCTTC ACCTTACAAGACTAATTTGTGTGATGTTGTACAGGACCATGTCTAGAGTA AACGTTTTGCTCCCCGTGGCGGGGCGCAAACTTCGAGTGTTGTGAAATAC ACTCTGGTACAAAGTATAGCAGCAGCAGCAGCAACAGCGGGGGCAATAGT AGTTGCTTGTGAAAATGTTACATCGGCACTTTATTGAAATGCCTCCCCGT CGATTGCCGTGGACACGTTCCCGAGTGCCGGATGAGGTGTTGACCGTCGC CATGCCAGGTGAATCTTCTTGGGGCGACCGTCGTTGTGTCAAAATGTCAT ACGCATTCCGACTGTATGCGCGCGCGAATCTCGTGTCATGGTGGCAGAGG CGGTGGGACTGTTTGAAGAAGTCCTGGCATCGGTGGACGTGAAGAAGCGA ACCGAGATCATGAGGCAGAGGTGACGAGTCTACTGCGGCAAAAAAGTGCA GGGCTCCTTTTGGCCGGGGCGGTGCTCTTGATTTGCTTTTGCTTTTAGTT TAGTTTACACGTGTTCTAGTATCATGTTTAGCCAGAAAAGACGGATGCTG TAGGCCCGACGTCAAGCACACAAAAATATGTATGTGAATGTTCCGGGGGT TTGAATGAGCTCATGTTTAAATATATATATATATATATATATCGGCTCCG GTAGCACAAGACCGTCTACGTCTCGTGTCGAATCTCCGATCGTATCGCGA ACGGATGTGCAACAGGTTCATCTCAGGAGGAGGAATCTCACGAGACCATG CAATAAGGTGGTTGACCCCTGTTTTATTTTTGTGTCCCCCTCCCCCCCTC AAAATGTTCGTGTTTTTGTCGCCGTGAACACCGTGAACAACCTCCTATAC AGCGGCTTGAGAGTAGAGCAACTGAAGGCAGAGCTCGATCAGTTGCTGGA ATCGGACGACCATTGA
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Coding sequence (CDS) from alignment at H-elongata_contig71189:543..1658-

>mRNA_H-elongata_contig71189.14780.1 ID=mRNA_H-elongata_contig71189.14780.1|Name=mRNA_H-elongata_contig71189.14780.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig71189:543..1658- (Himanthalia elongata Himel1 dioecious)
ATGGAGTTCGCGGCTGAGAGTAAGGAAACGACCTACTTCGACGAGGAGGC
TTCTGCGGCAAAGGAAGCGGTCGAGGATGGAGTTCGCGGCTGAGAGTAAG
GAAACGACCTACTTCGACGAGGAGGCTTCTGCGGCAAAGGAAGCGGTCGA
GGAGGCGGTGGGACTGTTTGAAGAAGTCCTGGCATCGGTGGACGTGAAGA
AGCGAACCGAGATCATGAGGCAGAGAGGCGGTGGGACTGTTTGAAGAAGT
CCTGGCATCGGTGGACGTGAAGAAGCGAACCGAGATCATGAGGCAGAGCG
GCTTGAGAGTAGAGCAACTGAAGGCAGAGCTCGATCAGTTGCTGGAATCG
GACGACCATTGACGGCTTGAGAGTAGAGCAACTGAAGGCAGAGCTCGATC
AGTTGCTGGAATCGGACGACCATTGA
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