mRNA_H-elongata_contig7118.14779.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7118.14779.1
Unique NamemRNA_H-elongata_contig7118.14779.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig7118.14779.1 vs. uniprot
Match: D7G0S7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0S7_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 1.060e-53
Identity = 89/134 (66.42%), Postives = 104/134 (77.61%), Query Frame = 1
Query:    1 VFDGGPVGLGTMTVVHAAESAEGSETVLPG-VYAGGFDSLVRLTRQGAVAKDRVKFIHGHSAWASGQLQRELDHNQWFVAAVAPELVTADCDKPLNPLWGKIRALHHRRARDAGAPVLRLMGGRYQEVAKRNEP 399
            VFDGGP+GLGTMTV+H A + EGS+ VL G V+AGGFD+LV +TRQG V+KDRV+F+HGHSAW+ GQLQ ELDHNQWFVAA APEL+T  CDKP +PLW K+               LRLMGG+YQEVAKRNEP
Sbjct:  192 VFDGGPMGLGTMTVLHDA-NVEGSDPVLDGGVFAGGFDTLVDVTRQGTVSKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITEHCDKPFHPLWTKL---------------LRLMGGKYQEVAKRNEP 309          
BLAST of mRNA_H-elongata_contig7118.14779.1 vs. uniprot
Match: A0A1E7FAB9_9STRA (DUF179-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FAB9_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 8.500e-12
Identity = 38/126 (30.16%), Postives = 57/126 (45.24%), Query Frame = 1
Query:   10 GGPVGLGTMTVVHAAESAEGSETVLPGVYAGGFDSLVRLTRQGAVAKDRVKFIHGHSAWASGQLQRELDHNQWFVAAVAPELVTADCDKPLNPLWGKIRALHHRRARDAGAPVLRLMGGRYQEVAK 387
            GGPV     +V+H     EGS+ + PGV+ GG + L+   R          FI GH+AW +GQL+RE+  + W+VA+ + + +      P                 D    +L  MG  Y E+ K
Sbjct:  282 GGPVLTEDFSVLHGFGHVEGSKKIAPGVFIGGSEELMNEVRISRFDPRHALFIKGHAAWVTGQLEREIQKDVWYVASASSDFMLRYAGAPTT---------EEDDVEDLWVDILNCMGDNYAELPK 398          
BLAST of mRNA_H-elongata_contig7118.14779.1 vs. uniprot
Match: A0A1Q3X8H8_9BACT (UPF0301 protein BGO69_09275 n=1 Tax=Bacteroidetes bacterium 46-16 TaxID=1895925 RepID=A0A1Q3X8H8_9BACT)

HSP 1 Score: 63.5 bits (153), Expect = 1.030e-9
Identity = 34/118 (28.81%), Postives = 60/118 (50.85%), Query Frame = 1
Query:    1 VFDGGPVGLGTMTVVHAAESAEGSETVLPGVYAGG-FDSLVRLTRQGAVAKDRVKFIHGHSAWASGQLQRELDHNQWFVAAVAPELVTADCDKPLNPLWGK-IRALHHRRARDAGAPV 348
            ++ GGPV + T+ ++H      G   + PGVY GG +++L  +   G     +++   G+S W+ GQL++E++   W +  + P L+    D     +W + IR+L    A  A  PV
Sbjct:   74 IYQGGPVQMDTLHMMHTTPVELGGNEIFPGVYWGGSYEALQDMIAAGTYDPAQLRLFVGYSGWSPGQLEKEVEEGSWIITDLTPRLLF---DTSPENVWKEAIRSLGDEYAYLANLPV 188          
BLAST of mRNA_H-elongata_contig7118.14779.1 vs. uniprot
Match: A0A2V3J2C6_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2C6_9FLOR)

HSP 1 Score: 62.0 bits (149), Expect = 1.340e-9
Identity = 40/130 (30.77%), Postives = 55/130 (42.31%), Query Frame = 1
Query:    1 VFDGGPVGLGTMTVVHAAESAEGSETVLPGVYAGGFDSLVRLTRQGAVAKDRVKFIHGHSAWASGQLQRELDHNQWFVAAVAPELVTADCDKPLNPLWGKIRALHHRRARDAGAPVLRLMGGRYQEVAKR 390
            +F GGPVGL  +T +H    A     V   V    F   +R    G +  D  +   G+S WA  QLQ E+D   W   + +  L+    D     L               GA +LRLMGGR+ ++A R
Sbjct:   14 LFLGGPVGLDAVTALH--RDAHFGRVVAGAVRTAAFAETMRRLEGGELRADACRLFCGYSGWAPRQLQHEVDVGVWLPCSASDALLMGFSDAAAPTL---------------GARLLRLMGGRFADIAAR 126          
BLAST of mRNA_H-elongata_contig7118.14779.1 vs. uniprot
Match: A0A7X7QM52_9BACT (YqgE/AlgH family protein n=1 Tax=Lentisphaerae bacterium TaxID=1932692 RepID=A0A7X7QM52_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 4.770e-9
Identity = 38/102 (37.25%), Postives = 52/102 (50.98%), Query Frame = 1
Query:    1 VFDGGPVGLGTMTVVHA-AESAEGSETVLPGVYAGG-FDSLVRLTRQGAVAKDRVKFIHGHSAWASGQLQRELDHNQWFVAAVAPELVTADCDKPLNPLWGK 300
            VF GGPV L  M VVH   ES   S  V+ GV+ GG F+ L +    G  A  R +F  G++ W SGQL  E   + W  A+ +  L+    D P + +W +
Sbjct:   64 VFQGGPVRLQAMQVVHPYGESVPQSLPVMAGVWLGGDFEVLCQGFADGRFAPGRCRFCLGYAGWGSGQLADEFAQDAWLHASASVALIF---DTPADRVWAR 162          
BLAST of mRNA_H-elongata_contig7118.14779.1 vs. uniprot
Match: A0A7V6IIX3_9BACT (UPF0301 protein GXZ40_00085 n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A7V6IIX3_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 2.040e-8
Identity = 30/86 (34.88%), Postives = 49/86 (56.98%), Query Frame = 1
Query:    1 VFDGGPVGLGTMTVVHAAESAEGSETVLPGVYAGGFDSLVRLTRQGAVAKDRVKFIHGHSAWASGQLQRELDHNQWFVAAVAPELV 258
            ++ GGPV    +  VH   S   S+ +LPG+Y G  D+L+++  +   ++   KF  G+S W  GQLQ+E++ N W V    P+L+
Sbjct:   75 LYFGGPVVEKMIFAVHNFPSPNFSK-LLPGIYTGFDDNLLKMVEENPNSEIDFKFFIGYSGWYPGQLQQEIEQNMWVVGNANPDLI 159          
BLAST of mRNA_H-elongata_contig7118.14779.1 vs. uniprot
Match: A0A3E1EW63_9FLAO (YqgE/AlgH family protein n=2 Tax=Brumimicrobium aurantiacum TaxID=1737063 RepID=A0A3E1EW63_9FLAO)

HSP 1 Score: 58.2 bits (139), Expect = 2.170e-7
Identity = 31/97 (31.96%), Postives = 48/97 (49.48%), Query Frame = 1
Query:   10 GGPVGLGTMTVVHA-AESAEGSETVLPGVYAGG-FDSLVRLTRQGAVAKDRVKFIHGHSAWASGQLQRELDHNQWFVAAVAPELVTADCDKPLNPLW 294
            GGPV    +  +H       GS  V  G++ GG +D L+   + G +   +V+F  G+S W  GQL+ E++ N W VA V   L   D    ++ +W
Sbjct:  146 GGPVQTENIFFIHTLGNRLPGSVEVDDGIFIGGDYDLLIEQLKDGLIDNSKVRFFLGYSGWDGGQLEEEINRNNWIVAPVLNPLEIMDTS--ISDIW 240          
BLAST of mRNA_H-elongata_contig7118.14779.1 vs. uniprot
Match: A0A4Q4KKK0_9FLAO (UPF0301 protein ERX46_10745 n=3 Tax=Brumimicrobium TaxID=200473 RepID=A0A4Q4KKK0_9FLAO)

HSP 1 Score: 56.6 bits (135), Expect = 4.080e-7
Identity = 32/97 (32.99%), Postives = 45/97 (46.39%), Query Frame = 1
Query:   10 GGPVGLGTMTVVHA-AESAEGSETVLPGVYAGG-FDSLVRLTRQGAVAKDRVKFIHGHSAWASGQLQRELDHNQWFVAAVAPELVTADCDKPLNPLW 294
            GGPV    +  +H   +   GS  V  G+Y GG +D L      G     +V+F  G+S W  GQL+ E++ N W VA V   L   D    +  +W
Sbjct:   75 GGPVQTENIFFIHTLGDGLPGSIEVDDGIYIGGDYDLLTEQLNDGTADPSKVRFFLGYSGWDPGQLEEEINRNNWIVAPVLNPLEIMDTS--ITDIW 169          
BLAST of mRNA_H-elongata_contig7118.14779.1 vs. uniprot
Match: A0A2W2BBF0_9BACT (UPF0301 protein DN068_07275 n=2 Tax=Taibaiella soli TaxID=1649169 RepID=A0A2W2BBF0_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 5.600e-7
Identity = 27/101 (26.73%), Postives = 47/101 (46.53%), Query Frame = 1
Query:    1 VFDGGPVGLGTMTVVHAAESAEGSETVLPGVYAGG-FDSLVRLTRQGAVAKDRVKFIHGHSAWASGQLQRELDHNQWFVAAVAPELVTADCDKPLNPLWGK 300
            ++ GGPV + T+ ++H      G   + PG+Y GG +D+L    +        ++   G++ W  GQL++EL    W V    P ++    D  +   W K
Sbjct:   73 IYQGGPVQMDTLHMLHRLPELIGGHEISPGIYWGGSYDALTDAVKHNLCDPADLRLFIGYAGWNEGQLEKELKDGSWLVTDGNPNILF---DTAIEETWKK 170          
BLAST of mRNA_H-elongata_contig7118.14779.1 vs. uniprot
Match: A0A6M1NAE7_9SPHI (YqgE/AlgH family protein n=1 Tax=Sphingobacterium sp. SGG-5 TaxID=2710881 RepID=A0A6M1NAE7_9SPHI)

HSP 1 Score: 53.1 bits (126), Expect = 7.320e-6
Identity = 30/80 (37.50%), Postives = 43/80 (53.75%), Query Frame = 1
Query:    1 VFDGGPVGLGTMTVVHAAESAEGSET-VLPGVYAGG-FDSLVRLTRQGAVAKDRVKFIHGHSAWASGQLQRELDHNQWFV 234
            ++ GGPV    +  +H A     S T V   VY GG F+ LV L  +  +  + +KF  G+S W++GQL  E+D N W V
Sbjct:   66 LYFGGPVQSNALFFLHRAYDRLLSGTKVYQDVYWGGDFERLVFLINEDLIQPEEIKFFLGYSGWSTGQLNDEIDQNNWAV 145          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7118.14779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7G0S7_ECTSI1.060e-5366.42Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1E7FAB9_9STRA8.500e-1230.16DUF179-domain-containing protein n=1 Tax=Fragilari... [more]
A0A1Q3X8H8_9BACT1.030e-928.81UPF0301 protein BGO69_09275 n=1 Tax=Bacteroidetes ... [more]
A0A2V3J2C6_9FLOR1.340e-930.77Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A7X7QM52_9BACT4.770e-937.25YqgE/AlgH family protein n=1 Tax=Lentisphaerae bac... [more]
A0A7V6IIX3_9BACT2.040e-834.88UPF0301 protein GXZ40_00085 n=1 Tax=Bacteroidales ... [more]
A0A3E1EW63_9FLAO2.170e-731.96YqgE/AlgH family protein n=2 Tax=Brumimicrobium au... [more]
A0A4Q4KKK0_9FLAO4.080e-732.99UPF0301 protein ERX46_10745 n=3 Tax=Brumimicrobium... [more]
A0A2W2BBF0_9BACT5.600e-726.73UPF0301 protein DN068_07275 n=2 Tax=Taibaiella sol... [more]
A0A6M1NAE7_9SPHI7.320e-637.50YqgE/AlgH family protein n=1 Tax=Sphingobacterium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7118contigH-elongata_contig7118:8619..10269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.4
Seed ortholog evalue9e-42
Seed eggNOG ortholog2880.D7G0S7
KEGG koko:K07735
EggNOG free text desc.Uncharacterized ACR, COG1678
EggNOG OGs2QRDU@2759,COG1678@1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Hectar predicted targeting categoryother localisation
Exons4
Model size408
Cds size408
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7118.14779.1prot_H-elongata_contig7118.14779.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7118 8619..10269 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931111.638968-CDS-H-elongata_contig7118:8618..86811622931111.638968-CDS-H-elongata_contig7118:8618..8681Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7118 8619..8681 -
1691679702.8633215-CDS-H-elongata_contig7118:8618..86811691679702.8633215-CDS-H-elongata_contig7118:8618..8681Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7118 8619..8681 -
1622931111.6534455-CDS-H-elongata_contig7118:9113..92331622931111.6534455-CDS-H-elongata_contig7118:9113..9233Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7118 9114..9233 -
1691679702.8750584-CDS-H-elongata_contig7118:9113..92331691679702.8750584-CDS-H-elongata_contig7118:9113..9233Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7118 9114..9233 -
1622931111.6673195-CDS-H-elongata_contig7118:9439..95291622931111.6673195-CDS-H-elongata_contig7118:9439..9529Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7118 9440..9529 -
1691679702.8841481-CDS-H-elongata_contig7118:9439..95291691679702.8841481-CDS-H-elongata_contig7118:9439..9529Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7118 9440..9529 -
1622931111.6827922-CDS-H-elongata_contig7118:10134..102691622931111.6827922-CDS-H-elongata_contig7118:10134..10269Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7118 10135..10269 -
1691679702.8939607-CDS-H-elongata_contig7118:10134..102691691679702.8939607-CDS-H-elongata_contig7118:10134..10269Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7118 10135..10269 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7118.14779.1

>prot_H-elongata_contig7118.14779.1 ID=prot_H-elongata_contig7118.14779.1|Name=mRNA_H-elongata_contig7118.14779.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
VFDGGPVGLGTMTVVHAAESAEGSETVLPGVYAGGFDSLVRLTRQGAVAK
DRVKFIHGHSAWASGQLQRELDHNQWFVAAVAPELVTADCDKPLNPLWGK
IRALHHRRARDAGAPVLRLMGGRYQEVAKRNEPTS*
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mRNA from alignment at H-elongata_contig7118:8619..10269-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7118.14779.1 ID=mRNA_H-elongata_contig7118.14779.1|Name=mRNA_H-elongata_contig7118.14779.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1651bp|location=Sequence derived from alignment at H-elongata_contig7118:8619..10269- (Himanthalia elongata Himel1 dioecious)
GTGTTCGACGGTGGGCCGGTTGGGCTCGGTACGATGACAGTGGTGCACGC GGCAGAGAGTGCCGAGGGGAGCGAGACAGTCCTCCCGGGGGTGTACGCGG GGGGGTTCGACTCGTTGGTGAGGTTGACCCGCCAGGTGAGCCTGAAAAAG GAAAGTAATGATTCCGCTTCCACTGGCGTGCCTGAGCCACCGAATCGAAG AAGCCGTCTGCATGTGAATGTTTTCTACGGGACCCGTCGGCCTTAAGAGT TTTTTTCGATGTCCCTGTTAGTACAGGCACAGAGAAGCATTTAGTTGCTT TGGCCCCTGCAACCCGTTGTGCGCTTCCGCGTGTGATACAATGTAAAATA TCTTCATTACTTTCTACCAAATGACGCTTAGCCGGTGACTGAAGTGAAAG ATTTTTCAGTTTTTGGCTTTTTTATGTCGAGTTCGTTGAAGAGAAAAATA GCGGGAGGCTCCGTCTTAATCGTTTTCTTCTCCCGTTATTTATACGACAT GATTAGCATTGCGCGATGGGTACTGTGGTACTCGCTACGGCAACTCAATT CTCTTACCTTGATCCTCTCAGAATGAACCGGTCGCGGAATGGCATAGTTT CAAAAGAGCCGTGTTGCCGTCTCATTCACGATGTGTGTCGTATATTTATT AATAAAACATGTAAATACATCAGGTGTATAATATATAATATATTAACATG TATTCATGTACTATTGACTGCGCACGCCGCGATTTCCCAGGGGGCAGTGG CGAAAGACCGCGTAAAGTTCATACACGGGCACTCGGCGTGGGCCTCGGGA CAGCTCCAGCGAGAGCTGGACCACAATCAGGTGTGGCCGCCGCCCTATTT ATACCCGTCTACCTGGGATTGATGGTGCTACTCGCGGGGGACTGCAGAGC CTAACGAACCAGCAATCAGCTCTTATTAATTGTGGTCATGTGTTATAAAG GGCGTGCAGATAAGGTGACGCCATTCGCGAGCCGTTTCCCTTTCTTCCCG ACCGACGTGCTGTTGGTCCGCGATTCTTCCTGACAGTGGTTTGTTGCCGC TGTCGCGCCGGAGCTTGTAACCGCCGACTGCGACAAGCCGCTCAATCCTC TTTGGGGGAAGATAAGAGCGCTGCACCACCGCCGCGCTCGTGACGCGGGC GCGCCAGTAATAGCGTTTTACTGGCGTGAATCGCACATTGTCTCCGTTTG GGCAACCACTCACCGTGCTACGCGCTTATCGATTTTGTCAGCGCACCTCC GTTCGCTCCGAAACGTTTCGCCGCAGAGTGCTCTATTTTCCAGACTGGCA TCGACAGGCTATCGGGCCAATTGCACATCGAGATTTATCTTTTTGGTATA GCCTGTTCTGCCCTAGAAGGAGAGAAAACTGGCTGTTTGTAGTCTCGTTT TAAGGGCGTCGCCTCGGGAGGCTGGCAAACGTTAACGTTAAGCGTTGCAC TCGTGCACGCCGACCCCGTGGCGGCCGGCCATTCGTGCGTTCGGCGCACG AAGGGTTTCTCCGAAGAACCTCCGTCGTTCCTTCCCTATTTTATTCCGAA GCCCTTAAATTCCCTTTGCCCGTGCAATTCGGCAAAAGGTACTCCGTCTG ATGGGGGGAAGATATCAAGAAGTCGCGAAAAGGAACGAGCCGACATCATA A
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Coding sequence (CDS) from alignment at H-elongata_contig7118:8619..10269-

>mRNA_H-elongata_contig7118.14779.1 ID=mRNA_H-elongata_contig7118.14779.1|Name=mRNA_H-elongata_contig7118.14779.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig7118:8619..10269- (Himanthalia elongata Himel1 dioecious)
GTGTTCGACGGTGGGCCGGTTGGGCTCGGTACGATGACAGTGGTGCACGC
GGCAGAGAGTGCCGAGGGGAGCGAGACAGTCCTCCCGGGGGTGTACGCGG
GGGGGTTCGACTCGTTGGTGAGGTTGACCCGCCAGGTGTTCGACGGTGGG
CCGGTTGGGCTCGGTACGATGACAGTGGTGCACGCGGCAGAGAGTGCCGA
GGGGAGCGAGACAGTCCTCCCGGGGGTGTACGCGGGGGGGTTCGACTCGT
TGGTGAGGTTGACCCGCCAGGGGGCAGTGGCGAAAGACCGCGTAAAGTTC
ATACACGGGCACTCGGCGTGGGCCTCGGGACAGCTCCAGCGAGAGCTGGA
CCACAATCAGGGGGCAGTGGCGAAAGACCGCGTAAAGTTCATACACGGGC
ACTCGGCGTGGGCCTCGGGACAGCTCCAGCGAGAGCTGGACCACAATCAG
TGGTTTGTTGCCGCTGTCGCGCCGGAGCTTGTAACCGCCGACTGCGACAA
GCCGCTCAATCCTCTTTGGGGGAAGATAAGAGCGCTGCACCACCGCCGCG
CTCGTGACGCGGGCGCGCCATGGTTTGTTGCCGCTGTCGCGCCGGAGCTT
GTAACCGCCGACTGCGACAAGCCGCTCAATCCTCTTTGGGGGAAGATAAG
AGCGCTGCACCACCGCCGCGCTCGTGACGCGGGCGCGCCAGTACTCCGTC
TGATGGGGGGAAGATATCAAGAAGTCGCGAAAAGGAACGAGCCGACATCA
TAAGTACTCCGTCTGATGGGGGGAAGATATCAAGAAGTCGCGAAAAGGAA
CGAGCCGACATCATAA
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