mRNA_H-elongata_contig7118.14779.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig7118.14779.1 vs. uniprot
Match: D7G0S7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0S7_ECTSI) HSP 1 Score: 180 bits (456), Expect = 1.060e-53 Identity = 89/134 (66.42%), Postives = 104/134 (77.61%), Query Frame = 1
Query: 1 VFDGGPVGLGTMTVVHAAESAEGSETVLPG-VYAGGFDSLVRLTRQGAVAKDRVKFIHGHSAWASGQLQRELDHNQWFVAAVAPELVTADCDKPLNPLWGKIRALHHRRARDAGAPVLRLMGGRYQEVAKRNEP 399
VFDGGP+GLGTMTV+H A + EGS+ VL G V+AGGFD+LV +TRQG V+KDRV+F+HGHSAW+ GQLQ ELDHNQWFVAA APEL+T CDKP +PLW K+ LRLMGG+YQEVAKRNEP
Sbjct: 192 VFDGGPMGLGTMTVLHDA-NVEGSDPVLDGGVFAGGFDTLVDVTRQGTVSKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITEHCDKPFHPLWTKL---------------LRLMGGKYQEVAKRNEP 309
BLAST of mRNA_H-elongata_contig7118.14779.1 vs. uniprot
Match: A0A1E7FAB9_9STRA (DUF179-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FAB9_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 8.500e-12 Identity = 38/126 (30.16%), Postives = 57/126 (45.24%), Query Frame = 1
Query: 10 GGPVGLGTMTVVHAAESAEGSETVLPGVYAGGFDSLVRLTRQGAVAKDRVKFIHGHSAWASGQLQRELDHNQWFVAAVAPELVTADCDKPLNPLWGKIRALHHRRARDAGAPVLRLMGGRYQEVAK 387
GGPV +V+H EGS+ + PGV+ GG + L+ R FI GH+AW +GQL+RE+ + W+VA+ + + + P D +L MG Y E+ K
Sbjct: 282 GGPVLTEDFSVLHGFGHVEGSKKIAPGVFIGGSEELMNEVRISRFDPRHALFIKGHAAWVTGQLEREIQKDVWYVASASSDFMLRYAGAPTT---------EEDDVEDLWVDILNCMGDNYAELPK 398
BLAST of mRNA_H-elongata_contig7118.14779.1 vs. uniprot
Match: A0A1Q3X8H8_9BACT (UPF0301 protein BGO69_09275 n=1 Tax=Bacteroidetes bacterium 46-16 TaxID=1895925 RepID=A0A1Q3X8H8_9BACT) HSP 1 Score: 63.5 bits (153), Expect = 1.030e-9 Identity = 34/118 (28.81%), Postives = 60/118 (50.85%), Query Frame = 1
Query: 1 VFDGGPVGLGTMTVVHAAESAEGSETVLPGVYAGG-FDSLVRLTRQGAVAKDRVKFIHGHSAWASGQLQRELDHNQWFVAAVAPELVTADCDKPLNPLWGK-IRALHHRRARDAGAPV 348
++ GGPV + T+ ++H G + PGVY GG +++L + G +++ G+S W+ GQL++E++ W + + P L+ D +W + IR+L A A PV
Sbjct: 74 IYQGGPVQMDTLHMMHTTPVELGGNEIFPGVYWGGSYEALQDMIAAGTYDPAQLRLFVGYSGWSPGQLEKEVEEGSWIITDLTPRLLF---DTSPENVWKEAIRSLGDEYAYLANLPV 188
BLAST of mRNA_H-elongata_contig7118.14779.1 vs. uniprot
Match: A0A2V3J2C6_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2C6_9FLOR) HSP 1 Score: 62.0 bits (149), Expect = 1.340e-9 Identity = 40/130 (30.77%), Postives = 55/130 (42.31%), Query Frame = 1
Query: 1 VFDGGPVGLGTMTVVHAAESAEGSETVLPGVYAGGFDSLVRLTRQGAVAKDRVKFIHGHSAWASGQLQRELDHNQWFVAAVAPELVTADCDKPLNPLWGKIRALHHRRARDAGAPVLRLMGGRYQEVAKR 390
+F GGPVGL +T +H A V V F +R G + D + G+S WA QLQ E+D W + + L+ D L GA +LRLMGGR+ ++A R
Sbjct: 14 LFLGGPVGLDAVTALH--RDAHFGRVVAGAVRTAAFAETMRRLEGGELRADACRLFCGYSGWAPRQLQHEVDVGVWLPCSASDALLMGFSDAAAPTL---------------GARLLRLMGGRFADIAAR 126
BLAST of mRNA_H-elongata_contig7118.14779.1 vs. uniprot
Match: A0A7X7QM52_9BACT (YqgE/AlgH family protein n=1 Tax=Lentisphaerae bacterium TaxID=1932692 RepID=A0A7X7QM52_9BACT) HSP 1 Score: 61.6 bits (148), Expect = 4.770e-9 Identity = 38/102 (37.25%), Postives = 52/102 (50.98%), Query Frame = 1
Query: 1 VFDGGPVGLGTMTVVHA-AESAEGSETVLPGVYAGG-FDSLVRLTRQGAVAKDRVKFIHGHSAWASGQLQRELDHNQWFVAAVAPELVTADCDKPLNPLWGK 300
VF GGPV L M VVH ES S V+ GV+ GG F+ L + G A R +F G++ W SGQL E + W A+ + L+ D P + +W +
Sbjct: 64 VFQGGPVRLQAMQVVHPYGESVPQSLPVMAGVWLGGDFEVLCQGFADGRFAPGRCRFCLGYAGWGSGQLADEFAQDAWLHASASVALIF---DTPADRVWAR 162
BLAST of mRNA_H-elongata_contig7118.14779.1 vs. uniprot
Match: A0A7V6IIX3_9BACT (UPF0301 protein GXZ40_00085 n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A7V6IIX3_9BACT) HSP 1 Score: 60.1 bits (144), Expect = 2.040e-8 Identity = 30/86 (34.88%), Postives = 49/86 (56.98%), Query Frame = 1
Query: 1 VFDGGPVGLGTMTVVHAAESAEGSETVLPGVYAGGFDSLVRLTRQGAVAKDRVKFIHGHSAWASGQLQRELDHNQWFVAAVAPELV 258
++ GGPV + VH S S+ +LPG+Y G D+L+++ + ++ KF G+S W GQLQ+E++ N W V P+L+
Sbjct: 75 LYFGGPVVEKMIFAVHNFPSPNFSK-LLPGIYTGFDDNLLKMVEENPNSEIDFKFFIGYSGWYPGQLQQEIEQNMWVVGNANPDLI 159
BLAST of mRNA_H-elongata_contig7118.14779.1 vs. uniprot
Match: A0A3E1EW63_9FLAO (YqgE/AlgH family protein n=2 Tax=Brumimicrobium aurantiacum TaxID=1737063 RepID=A0A3E1EW63_9FLAO) HSP 1 Score: 58.2 bits (139), Expect = 2.170e-7 Identity = 31/97 (31.96%), Postives = 48/97 (49.48%), Query Frame = 1
Query: 10 GGPVGLGTMTVVHA-AESAEGSETVLPGVYAGG-FDSLVRLTRQGAVAKDRVKFIHGHSAWASGQLQRELDHNQWFVAAVAPELVTADCDKPLNPLW 294
GGPV + +H GS V G++ GG +D L+ + G + +V+F G+S W GQL+ E++ N W VA V L D ++ +W
Sbjct: 146 GGPVQTENIFFIHTLGNRLPGSVEVDDGIFIGGDYDLLIEQLKDGLIDNSKVRFFLGYSGWDGGQLEEEINRNNWIVAPVLNPLEIMDTS--ISDIW 240
BLAST of mRNA_H-elongata_contig7118.14779.1 vs. uniprot
Match: A0A4Q4KKK0_9FLAO (UPF0301 protein ERX46_10745 n=3 Tax=Brumimicrobium TaxID=200473 RepID=A0A4Q4KKK0_9FLAO) HSP 1 Score: 56.6 bits (135), Expect = 4.080e-7 Identity = 32/97 (32.99%), Postives = 45/97 (46.39%), Query Frame = 1
Query: 10 GGPVGLGTMTVVHA-AESAEGSETVLPGVYAGG-FDSLVRLTRQGAVAKDRVKFIHGHSAWASGQLQRELDHNQWFVAAVAPELVTADCDKPLNPLW 294
GGPV + +H + GS V G+Y GG +D L G +V+F G+S W GQL+ E++ N W VA V L D + +W
Sbjct: 75 GGPVQTENIFFIHTLGDGLPGSIEVDDGIYIGGDYDLLTEQLNDGTADPSKVRFFLGYSGWDPGQLEEEINRNNWIVAPVLNPLEIMDTS--ITDIW 169
BLAST of mRNA_H-elongata_contig7118.14779.1 vs. uniprot
Match: A0A2W2BBF0_9BACT (UPF0301 protein DN068_07275 n=2 Tax=Taibaiella soli TaxID=1649169 RepID=A0A2W2BBF0_9BACT) HSP 1 Score: 56.2 bits (134), Expect = 5.600e-7 Identity = 27/101 (26.73%), Postives = 47/101 (46.53%), Query Frame = 1
Query: 1 VFDGGPVGLGTMTVVHAAESAEGSETVLPGVYAGG-FDSLVRLTRQGAVAKDRVKFIHGHSAWASGQLQRELDHNQWFVAAVAPELVTADCDKPLNPLWGK 300
++ GGPV + T+ ++H G + PG+Y GG +D+L + ++ G++ W GQL++EL W V P ++ D + W K
Sbjct: 73 IYQGGPVQMDTLHMLHRLPELIGGHEISPGIYWGGSYDALTDAVKHNLCDPADLRLFIGYAGWNEGQLEKELKDGSWLVTDGNPNILF---DTAIEETWKK 170
BLAST of mRNA_H-elongata_contig7118.14779.1 vs. uniprot
Match: A0A6M1NAE7_9SPHI (YqgE/AlgH family protein n=1 Tax=Sphingobacterium sp. SGG-5 TaxID=2710881 RepID=A0A6M1NAE7_9SPHI) HSP 1 Score: 53.1 bits (126), Expect = 7.320e-6 Identity = 30/80 (37.50%), Postives = 43/80 (53.75%), Query Frame = 1
Query: 1 VFDGGPVGLGTMTVVHAAESAEGSET-VLPGVYAGG-FDSLVRLTRQGAVAKDRVKFIHGHSAWASGQLQRELDHNQWFV 234
++ GGPV + +H A S T V VY GG F+ LV L + + + +KF G+S W++GQL E+D N W V
Sbjct: 66 LYFGGPVQSNALFFLHRAYDRLLSGTKVYQDVYWGGDFERLVFLINEDLIQPEEIKFFLGYSGWSTGQLNDEIDQNNWAV 145 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7118.14779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig7118.14779.1 >prot_H-elongata_contig7118.14779.1 ID=prot_H-elongata_contig7118.14779.1|Name=mRNA_H-elongata_contig7118.14779.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp VFDGGPVGLGTMTVVHAAESAEGSETVLPGVYAGGFDSLVRLTRQGAVAKback to top mRNA from alignment at H-elongata_contig7118:8619..10269- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig7118.14779.1 ID=mRNA_H-elongata_contig7118.14779.1|Name=mRNA_H-elongata_contig7118.14779.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1651bp|location=Sequence derived from alignment at H-elongata_contig7118:8619..10269- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig7118:8619..10269- >mRNA_H-elongata_contig7118.14779.1 ID=mRNA_H-elongata_contig7118.14779.1|Name=mRNA_H-elongata_contig7118.14779.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig7118:8619..10269- (Himanthalia elongata Himel1 dioecious)back to top |