mRNA_H-elongata_contig7117.14778.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7117.14778.1
Unique NamemRNA_H-elongata_contig7117.14778.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7117.14778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7117contigH-elongata_contig7117:6738..7527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Exons2
Model size665
Cds size444
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7117.14778.1prot_H-elongata_contig7117.14778.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7117 6738..7308 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931111.4674122-CDS-H-elongata_contig7117:6737..71371622931111.4674122-CDS-H-elongata_contig7117:6737..7137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7117 6738..7137 +
1691679702.776505-CDS-H-elongata_contig7117:6737..71371691679702.776505-CDS-H-elongata_contig7117:6737..7137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7117 6738..7137 +
1622931111.482609-CDS-H-elongata_contig7117:7264..73081622931111.482609-CDS-H-elongata_contig7117:7264..7308Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7117 7265..7308 +
1691679702.7952654-CDS-H-elongata_contig7117:7264..73081691679702.7952654-CDS-H-elongata_contig7117:7264..7308Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7117 7265..7308 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931111.5046396-UTR-H-elongata_contig7117:7308..75271622931111.5046396-UTR-H-elongata_contig7117:7308..7527Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7117 7309..7527 +
1691679702.8081272-UTR-H-elongata_contig7117:7308..75271691679702.8081272-UTR-H-elongata_contig7117:7308..7527Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7117 7309..7527 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7117.14778.1

>prot_H-elongata_contig7117.14778.1 ID=prot_H-elongata_contig7117.14778.1|Name=mRNA_H-elongata_contig7117.14778.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=148bp
SGSSLQRLAVDVVARAASEAVAAIEVAQISSCTKSPRGRSKTGRGLGIEA
DRRAFPISRRALAEPTLRFFVPCALYWQRLASTLPPQYHPASPSCPRIRC
TRWFLLGVQNFDNHPLHSKEYLVQRMTCCRAAAXXXXSSSSGSIISK*
back to top

mRNA from alignment at H-elongata_contig7117:6738..7527+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7117.14778.1 ID=mRNA_H-elongata_contig7117.14778.1|Name=mRNA_H-elongata_contig7117.14778.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=790bp|location=Sequence derived from alignment at H-elongata_contig7117:6738..7527+ (Himanthalia elongata Himel1 dioecious)
TCCGGATCTTCCCTCCAACGCCTCGCCGTGGATGTGGTGGCGAGAGCAGC
GTCGGAGGCTGTGGCCGCTATTGAGGTTGCACAGATATCCAGCTGCACAA
AATCCCCACGAGGACGAAGTAAGACGGGAAGGGGATTGGGAATAGAGGCC
GATCGTCGCGCGTTTCCGATTTCGAGGAGAGCGCTCGCCGAGCCAACTCT
GCGATTTTTCGTCCCATGCGCCTTGTACTGGCAACGTCTTGCATCGACAT
TACCGCCGCAGTACCATCCAGCATCTCCTTCTTGCCCTCGCATCCGATGC
ACTCGATGGTTCTTGCTGGGAGTCCAGAATTTTGACAACCACCCTCTGCA
CAGCAAGGAGTACCTTGTTCAGAGGATGACATGCTGTCGTGCAGCAGCAG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAGCAGCAGTAGC
GGTAGCATCATCAGCAAGTAGCAGCAGCAGCAGCAGGGTAGAGTAACAGC
AACAGCAGGTGCACTGCTGAAAAATGGGGTTTCGGCCCTTTTCAGCGGCA
TTTTGTCCCCGGGATTGCCCGTCATATACTTTTTGTTCGTTTGTGAACAA
GAACACCGTGCTTTAGCATTGCAACGTACGCGCTTTGCAGAACAACCACC
TATTCAATGAAACCATTTTATAGCACTTTGGGTAATATCG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig7117:6738..7527+

>mRNA_H-elongata_contig7117.14778.1 ID=mRNA_H-elongata_contig7117.14778.1|Name=mRNA_H-elongata_contig7117.14778.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=888bp|location=Sequence derived from alignment at H-elongata_contig7117:6738..7527+ (Himanthalia elongata Himel1 dioecious)
TCCGGATCTTCCCTCCAACGCCTCGCCGTGGATGTGGTGGCGAGAGCAGC
GTCGGAGGCTGTGGCCGCTATTGAGGTTGCACAGATATCCAGCTGCACAA
AATCCCCACGAGGACGAAGTAAGACGGGAAGGGGATTGGGAATAGAGGCC
GATCGTCGCGCGTTTCCGATTTCGAGGAGAGCGCTCGCCGAGCCAACTCT
GCGATTTTTCGTCCCATGCGCCTTGTACTGGCAACGTCTTGCATCGACAT
TACCGCCGCAGTACCATCCAGCATCTCCTTCTTGCCCTCGCATCCGATGC
ACTCGATGGTTCTTGCTGGGAGTCCAGAATTTTGACAACCACCCTCTGCA
CAGCAAGGAGTACCTTGTTCAGAGGATGACATGCTGTCGTGCAGCAGCAG
TCCGGATCTTCCCTCCAACGCCTCGCCGTGGATGTGGTGGCGAGAGCAGC
GTCGGAGGCTGTGGCCGCTATTGAGGTTGCACAGATATCCAGCTGCACAA
AATCCCCACGAGGACGAAGTAAGACGGGAAGGGGATTGGGAATAGAGGCC
GATCGTCGCGCGTTTCCGATTTCGAGGAGAGCGCTCGCCGAGCCAACTCT
GCGATTTTTCGTCCCATGCGCCTTGTACTGGCAACGTCTTGCATCGACAT
TACCGCCGCAGTACCATCCAGCATCTCCTTCTTGCCCTCGCATCCGATGC
ACTCGATGGTTCTTGCTGGGAGTCCAGAATTTTGACAACCACCCTCTGCA
CAGCAAGGAGTACCTTGTTCAGAGGATGACATGCTGTCGTGCAGCAGCAG
NNNNNNNNNGCAGCAGCAGTAGCGGTAGCATCATCAGCAAGTAGNNNNNN
NNNGCAGCAGCAGTAGCGGTAGCATCATCAGCAAGTAG
back to top