mRNA_H-elongata_contig7117.14777.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig7117.14777.1 vs. uniprot
Match: D7FR92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR92_ECTSI) HSP 1 Score: 176 bits (445), Expect = 9.860e-51 Identity = 80/104 (76.92%), Postives = 90/104 (86.54%), Query Frame = 1
Query: 1 TWSLWLACLSFLFAPFWFNPLSFHWGNIVEDYKIWMRWMTGMGENSSNSW---EIWWREENAYLSRFSLTQKMQLLLRPLIYVLIGYGIGGPQLMRLNHDEIQV 303
TWSLWLACLSFLFAPFWFNPLSFHWG +V+DYKIWMRWMTG G N E+WWREEN+YLSRFSLTQKMQ L+RPLIYV+IGYGIGGPQL+ L+H E++V
Sbjct: 20 TWSLWLACLSFLFAPFWFNPLSFHWGKVVQDYKIWMRWMTGTGGNRLQQLGVSEVWWREENSYLSRFSLTQKMQGLVRPLIYVVIGYGIGGPQLLGLDHKELKV 123
BLAST of mRNA_H-elongata_contig7117.14777.1 vs. uniprot
Match: A0A835Z1S2_9STRA (1,3-beta-glucan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1S2_9STRA) HSP 1 Score: 147 bits (371), Expect = 4.220e-38 Identity = 61/94 (64.89%), Postives = 75/94 (79.79%), Query Frame = 1
Query: 1 TWSLWLACLSFLFAPFWFNPLSFHWGNIVEDYKIWMRWMTGMGENSSNSWEIWWREENAYLSRFSLTQKMQLLLRPLIYVLIGYGIGGPQLMRL 282
TWSLWLAC+SFLFAPFWFNPLSF W V DYK WMRWM+G G +SSNSWE+WWRE+N Y+S+F L QK+Q +L+P Y++IG GI P++ L
Sbjct: 1940 TWSLWLACISFLFAPFWFNPLSFEWSKCVSDYKRWMRWMSGTGGSSSNSWEVWWREDNGYMSKFGLGQKLQCMLKPAFYLVIGVGIATPKMAEL 2033
BLAST of mRNA_H-elongata_contig7117.14777.1 vs. uniprot
Match: A0A6H5JFR3_9PHAE (1,3-beta-glucan synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR3_9PHAE) HSP 1 Score: 142 bits (358), Expect = 2.360e-36 Identity = 66/101 (65.35%), Postives = 75/101 (74.26%), Query Frame = 1
Query: 1 TWSLWLACLSFLFAPFWFNPLSFHWGNIVEDYKIWMRWMTGMGENSSNSWEIWWREENAYLSRFSLTQKMQLLLRPLIYVLIGYGIGGPQLMRLNHDEIQV 303
TWSLWLACLSFLFAPFWFNPLSFHWG +V+DYKIWMRWMTG G NSSNSWE L+RPLIYV+IGYG+GGPQL+ L+H E++V
Sbjct: 1854 TWSLWLACLSFLFAPFWFNPLSFHWGKVVQDYKIWMRWMTGTGGNSSNSWEG--------------------LVRPLIYVVIGYGVGGPQLLGLDHKELKV 1934
BLAST of mRNA_H-elongata_contig7117.14777.1 vs. uniprot
Match: A0A835Z4B5_9STRA (1,3-beta-glucan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4B5_9STRA) HSP 1 Score: 137 bits (344), Expect = 1.800e-34 Identity = 54/83 (65.06%), Postives = 71/83 (85.54%), Query Frame = 1
Query: 1 TWSLWLACLSFLFAPFWFNPLSFHWGNIVEDYKIWMRWMTGMGENSSNSWEIWWREENAYLSRFSLTQKMQLLLRPLIYVLIG 249
TWSLWLAC+SFLFAPFWFNPLSF WG ++DY+ W+RWM+G G +SSNSW++WWREEN Y+S+F L QK+Q +L+P Y+++G
Sbjct: 1541 TWSLWLACVSFLFAPFWFNPLSFEWGKCMDDYRRWVRWMSGTGGSSSNSWDVWWREENLYVSKFGLGQKLQCMLKPAFYLVVG 1623
BLAST of mRNA_H-elongata_contig7117.14777.1 vs. uniprot
Match: A0A482SV99_9ARCH (FKS1_dom1 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SV99_9ARCH) HSP 1 Score: 114 bits (286), Expect = 1.150e-26 Identity = 50/106 (47.17%), Postives = 68/106 (64.15%), Query Frame = 1
Query: 1 TWSLWLACLSFLFAPFWFNPLSFHWGNIVEDYKIWMRWMTGMGENSSNSWEIWWREENAYLSRFSLTQKMQLLL-RPLIYVLIGYGIGGPQLMRLNHDEIQVCKYY 315
TWSLWLA +SF+F PFWFNPLSF W + EDY WMRWM G NS SWE WW+EEN + + S T K+ L + + ++++ I G+ G +L+ D I V + +
Sbjct: 1644 TWSLWLASISFMFGPFWFNPLSFEWTRLSEDYYAWMRWMAERGGNSEQSWESWWKEENNFYQKISFTWKLFLFIQKSILWIFIAVGLVGSKLLHSKGDRILVFEMF 1749
BLAST of mRNA_H-elongata_contig7117.14777.1 vs. uniprot
Match: A0A7S4R501_9STRA (1,3-beta-glucan synthase (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R501_9STRA) HSP 1 Score: 112 bits (279), Expect = 1.010e-25 Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 1
Query: 1 TWSLWLACLSFLFAPFWFNPLSFHWGNIVEDYKIWMRWMTGMGENSSNSWEIWWREENAYLSRFSLTQKMQLLLRPLIYVLIGYGIGGPQL 273
TWS+WLA +SFL +PFWFNPL+F W + DY ++RWM G G N+S SW+IWW EENAY + SL KM +L+ +YV++ GI G L
Sbjct: 1773 TWSMWLASISFLASPFWFNPLTFDWSVVTSDYGKYIRWMCGSGGNASKSWDIWWTEENAYYKKLSLPSKMISVLKATLYVIMAIGIWGSDL 1863
BLAST of mRNA_H-elongata_contig7117.14777.1 vs. uniprot
Match: K3W706_GLOUD (1,3-beta-glucan synthase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W706_GLOUD) HSP 1 Score: 103 bits (257), Expect = 9.150e-23 Identity = 40/86 (46.51%), Postives = 62/86 (72.09%), Query Frame = 1
Query: 1 TWSLWLACLSFLFAPFWFNPLSFHWGNIVEDYKIWMRWMTGMGENSSNSWEIWWREENAYLSRFSLTQKMQLLLRPLIYVLIGYGI 258
TWSLWL LS+ F+PFWFNPL+F W +++ED+++W++WM G G N++ SWE W++EENAY S K+ + ++ L++ +I I
Sbjct: 1657 TWSLWLVVLSWYFSPFWFNPLAFEWSDVIEDWRVWLKWMRGDGGNANQSWEAWFKEENAYFSTLRPWAKIVVTMKGLLFTVIALSI 1742
BLAST of mRNA_H-elongata_contig7117.14777.1 vs. uniprot
Match: F0WVN6_9STRA (1,3-beta-glucan synthase n=2 Tax=Albugo TaxID=65356 RepID=F0WVN6_9STRA) HSP 1 Score: 102 bits (254), Expect = 2.340e-22 Identity = 41/86 (47.67%), Postives = 61/86 (70.93%), Query Frame = 1
Query: 1 TWSLWLACLSFLFAPFWFNPLSFHWGNIVEDYKIWMRWMTGMGENSSNSWEIWWREENAYLSRFSLTQKMQLLLRPLIYVLIGYGI 258
TWSLWL LS+ F+PFWFNPL+F W + VED+++W++WM G G N++ SWE W++EENAY S K+ + L+ L++ ++ I
Sbjct: 2228 TWSLWLVVLSWTFSPFWFNPLAFEWSDAVEDFRVWVKWMRGDGGNANQSWEAWFKEENAYFSTLRPFAKVCVTLKGLLFTVVALSI 2313
BLAST of mRNA_H-elongata_contig7117.14777.1 vs. uniprot
Match: A0A7S2UV62_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV62_9STRA) HSP 1 Score: 101 bits (251), Expect = 5.800e-22 Identity = 41/90 (45.56%), Postives = 62/90 (68.89%), Query Frame = 1
Query: 1 TWSLWLACLSFLFAPFWFNPLSFHWGNIVEDYKIWMRWMTGMGENSSNSWEIWWREENAYLSRFSLTQKMQLLLRPLIYVLIGYGIGGPQ 270
TWSLWLA +S L +PFWFNP + W +++DY WM+WM+ G ++ SWE+WW+EE Y + + TQ++ +L + LI++ I YGI P+
Sbjct: 1318 TWSLWLADVSLLASPFWFNPGALEWTRVLDDYSNWMKWMSSSGGSAQKSWEVWWKEEMGYFKQVAPTQRLYILPKSLIWMGIAYGIVTPK 1407
BLAST of mRNA_H-elongata_contig7117.14777.1 vs. uniprot
Match: A0A7S4EG16_9STRA (1,3-beta-glucan synthase n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EG16_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 2.030e-21 Identity = 42/93 (45.16%), Postives = 57/93 (61.29%), Query Frame = 1
Query: 1 TWSLWLACLSFLFAPFWFNPLSFHWGNIVEDYKIWMRWMTGMGENSSNSWEIWWREENAYLSRFSLTQKMQLLLRPLIYVLIGYGIGGPQLMR 279
TWSLWLA +SFL +PFWFNPL+F W ++ DY +W+RW+ G S+ SW +W+ EENAY T K +++ I L+ GI L R
Sbjct: 1767 TWSLWLASISFLASPFWFNPLTFEWNTVITDYGLWVRWIRGTSGGSTKSWSMWYNEENAYYKGLPFTSKCIFMVKAAILYLVADGIWRSDLFR 1859 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7117.14777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig7117.14777.1 >prot_H-elongata_contig7117.14777.1 ID=prot_H-elongata_contig7117.14777.1|Name=mRNA_H-elongata_contig7117.14777.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp MRWMTGMGENSSNSWEIWWREENAYLSRFSLTQKMQLLLRPLIYVLIGYGback to top mRNA from alignment at H-elongata_contig7117:912..2079+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig7117.14777.1 ID=mRNA_H-elongata_contig7117.14777.1|Name=mRNA_H-elongata_contig7117.14777.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1168bp|location=Sequence derived from alignment at H-elongata_contig7117:912..2079+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig7117:912..2079+ >mRNA_H-elongata_contig7117.14777.1 ID=mRNA_H-elongata_contig7117.14777.1|Name=mRNA_H-elongata_contig7117.14777.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig7117:912..2079+ (Himanthalia elongata Himel1 dioecious)back to top |