mRNA_H-elongata_contig7116.14776.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig7116.14776.1 vs. uniprot
Match: D7G1J9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J9_ECTSI) HSP 1 Score: 231 bits (588), Expect = 2.160e-64 Identity = 133/338 (39.35%), Postives = 181/338 (53.55%), Query Frame = 2
Query: 122 MFCVIVSVLLAFPALAKARSHNLRIKACSDIYSGTENTIYLKFCQGMSN-CTTGESNAYNLDGELKHPGTWSFFDVPLGYAPTTMVAWLSGDDAWCIEEVIWNNSTSLLGRGARIYLDGDKGFRGCNYGVHHQTGRFYPCRDHWRFFNLRGKDDFTYEIAVKQC---------------------KENTASTAI-ASLCSESMCLDDVGDVAKFNLTLGRPGNDG---------------WVKKRVKMTFNPVAMKLKGTGNL-WCANDIAFNDFRLVDHSSLP--IVLSDEKEQYFYNVQMFDIKPLRNESSGGGTG---IEEYAWAIFFEVATAVL 1003
+F +++ FPA A + + L ++ + +G+ + ++L FC G + C G N YN EL GT + F++PL Y PT M + G DAWC +E IWN T+LLG GAR+YLDGD G +GCNYGVH TG FYPC+ WRFFNL G DD+ YEI VK C +E++AST I ASLCSES C + G+V N+TL G W R TFNPVAM+L G+L WCA ++AFN++ LV+ + P + L ++ F+NVQ + + GG+ I+ AW + EV TAVL
Sbjct: 30 LFLLLLLAGWTFPATAAIQPYTLEVRTRNATNAGSLDEVHLSFCDGGGDDCVMGPENVYNSMAELAEIGTRATFEIPLAYEPTAMSISIVGIDAWCFDEAIWNGGTNLLGSGARVYLDGDLGEKGCNYGVHFDTGWFYPCQSRWRFFNLPGSDDYEYEIKVKPCDSATPSGSASLSQQEEEAAAVRESSASTKILASLCSESECDETAGEVV--NVTLAAEPAQGXXXXXXXXXXXXXXDWATTRTPATFNPVAMRLTNVGDLPWCAEEVAFNEYTLVNRYASPHGMKLDVGDDRLFFNVQSLGLLAGDSSDDPGGSDDDYIKGEAWELAREVITAVL 365
BLAST of mRNA_H-elongata_contig7116.14776.1 vs. uniprot
Match: A0A6H5K899_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K899_9PHAE) HSP 1 Score: 225 bits (573), Expect = 2.830e-63 Identity = 122/328 (37.20%), Postives = 173/328 (52.74%), Query Frame = 2
Query: 89 RGPATERIWDVMFCVIVSVLLAFPALAKARSHNLRIKACSDIYSGTENTIYLKFCQGMSN-CTTGESNAYNLDGELKHPGTWSFFDVPLGYAPTTMVAWLSGDDAWCIEEVIWNNSTSLLGRGARIYLDGDKGFRGCNYGVHHQTGRFYPCRDHWRFFNLRGKDDFTYEIAVKQCKENTAS----------------------TAIASLCSESMCLDDVGDVAKFNLTL--------------GRPGNDG-WVKKRVKMTFNPVAMKLKGTGNL-WCANDIAFNDFRLVDHSSLP--IVLSDEKEQYFYNVQMFDIKPLRNESSGGGT 949
R AT + +++ ++++ A A + L ++ C++ +G+ + ++L FC G + C G N YN EL GTW+ F++PL + PT M + G DAWC +EVIWN T+LLG G R+YLDGD G +GCNYGVH TG FYPC+ WRFFNL+G DD+ YEI VK C T+S +ASLCSES C + VG+V L R G+ G W R TFNPVAM+L G+ WCA ++AFN++ LV+ + P + L ++ F+NVQ + + GG+
Sbjct: 104 RASATVKAGNLLLLLLLAGW-TITATAAIQPFTLEVRTCNETNAGSLDEVHLSFCDGGGDDCVMGPENVYNSVAELAEIGTWTPFEIPLAFEPTAMSMSMVGIDAWCFDEVIWNGGTNLLGSGGRVYLDGDLGKKGCNYGVHFDTGWFYPCQSSWRFFNLQGSDDYEYEIKVKPCGSATSSGXXXXXXXXXXXXXXXXXXXSSRILASLCSESECDETVGEVVNVTLAAEPSHRHGXXXXXXTSRAGSGGDWATTRTPATFNPVAMRLTNVGDFPWCAEEVAFNEYTLVNRFASPHGMKLGVGDDRLFFNVQSLGLLAGASSDDPGGS 430 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7116.14776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig7116.14776.1 >prot_H-elongata_contig7116.14776.1 ID=prot_H-elongata_contig7116.14776.1|Name=mRNA_H-elongata_contig7116.14776.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=423bp MFCVIVSVLLAFPALAKARSHNLRIKACSDIYSGTENTIYLKFCQGMSNCback to top mRNA from alignment at H-elongata_contig7116:3781..7723+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig7116.14776.1 ID=mRNA_H-elongata_contig7116.14776.1|Name=mRNA_H-elongata_contig7116.14776.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3943bp|location=Sequence derived from alignment at H-elongata_contig7116:3781..7723+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig7116:3781..7723+ >mRNA_H-elongata_contig7116.14776.1 ID=mRNA_H-elongata_contig7116.14776.1|Name=mRNA_H-elongata_contig7116.14776.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2538bp|location=Sequence derived from alignment at H-elongata_contig7116:3781..7723+ (Himanthalia elongata Himel1 dioecious)back to top |