mRNA_H-elongata_contig70976.14761.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70976.14761.1
Unique NamemRNA_H-elongata_contig70976.14761.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70976.14761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70976contigH-elongata_contig70976:411..1529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size584
Cds size582
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70976.14761.1prot_H-elongata_contig70976.14761.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70976 411..1529 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931109.175958-CDS-H-elongata_contig70976:410..5691622931109.175958-CDS-H-elongata_contig70976:410..569Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70976 411..569 -
1691679701.8353856-CDS-H-elongata_contig70976:410..5691691679701.8353856-CDS-H-elongata_contig70976:410..569Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70976 411..569 -
1622931109.1994743-CDS-H-elongata_contig70976:759..8311622931109.1994743-CDS-H-elongata_contig70976:759..831Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70976 760..831 -
1691679701.8528678-CDS-H-elongata_contig70976:759..8311691679701.8528678-CDS-H-elongata_contig70976:759..831Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70976 760..831 -
1622931109.218445-CDS-H-elongata_contig70976:1178..15291622931109.218445-CDS-H-elongata_contig70976:1178..1529Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70976 1179..1529 -
1691679701.8651407-CDS-H-elongata_contig70976:1178..15291691679701.8651407-CDS-H-elongata_contig70976:1178..1529Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70976 1179..1529 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70976.14761.1

>prot_H-elongata_contig70976.14761.1 ID=prot_H-elongata_contig70976.14761.1|Name=mRNA_H-elongata_contig70976.14761.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=194bp
GFHATGVNTRFGFFRSLSKRQGSVVGEATEGPVMEGPAAAEAASALLYGT
NWSVTYNNASSRSRAKRGGGSKASSSRMEMLGSLERSPSSRMNSRLGYLV
TDDANDDAPRLQLSEHAALLLLEASVFVNGEREALIANLSKPSQDEYVQA
LIGYVCSPPLDFEADDSALVSGNRASSGEYPDRKSPADAGPEAA
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mRNA from alignment at H-elongata_contig70976:411..1529-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70976.14761.1 ID=mRNA_H-elongata_contig70976.14761.1|Name=mRNA_H-elongata_contig70976.14761.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1119bp|location=Sequence derived from alignment at H-elongata_contig70976:411..1529- (Himanthalia elongata Himel1 dioecious)
GGCTTTCACGCGACCGGCGTAAACACTCGCTTTGGGTTCTTCCGGAGCCT
AAGCAAGAGGCAAGGGTCCGTGGTTGGTGAGGCCACGGAGGGTCCGGTCA
TGGAGGGCCCCGCGGCGGCAGAGGCGGCGAGTGCGTTACTGTACGGTACT
AATTGGTCCGTTACCTACAATAATGCCTCCAGTAGGTCGCGCGCGAAGCG
GGGCGGCGGTTCTAAGGCATCAAGCTCGAGGATGGAAATGCTGGGGTCAT
TGGAGCGCTCGCCGTCGAGCAGAATGAACTCACGCTTGGGGTATTTGGTA
ACTGATGACGCCAACGACGATGCGCCCAGGTTACAGCTCAGTGAACACGC
GGTAAGATCAGATGTTAGTGGTATGATTGTCTGGGTCGAGCTTTGTGGTT
GATCAAAACCTCCTTGACCTTCAGAACGTCACCACGCGGCCAAGACTTCT
TCTTGCGGCCCCCCTCAATTGCGGCTCGAGCGTGCTCGTTTGTACGCGTT
AAAAGAAGGGGTTTAAGGAAGCTGTCGCGGTTACGAGCTGTCAAGTTTTT
GTCGGCGGTATTCAGCTGACAGGGGCTCACAAATATGAGTCGTCTTGCAG
CAGCCCCGTGGCGTGGCAACGACGAGATGACACGGCATCGATCAGTACTC
TACAATTGCACGAATCCCGCCACAACAACTGTGACCCGAATCATGCAGGC
ACTTCTTCTCCTGGAGGCGAGCGTCTTCGTCAACGGCGAGCGGGAGGCCC
TAATCGCCAACCTCAGTAAGGTATACTGCTCTAGTGTCTGCAGCCATCGA
TCGAGAAACACGCGCTTTTTAAAGGTGAAGCGGACGCATCTCGTCACTGT
GACCGTACCATCTGCTCATGCTGTAGGACCACCCGCAAACGTTTACGTAA
AACACACACACATACACCTCACCATATTTCTTCTTCCCATACCTCTCTAC
GAAACCCCAGCCGAGTCAGGATGAATATGTCCAGGCACTCATTGGGTACG
TCTGCTCGCCGCCCCTCGACTTCGAGGCAGACGACTCCGCGTTGGTCAGC
GGCAACAGAGCGTCCAGCGGAGAGTACCCGGACCGCAAGTCGCCCGCGGA
CGCCGGGCCGGAGGCAGCC
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Coding sequence (CDS) from alignment at H-elongata_contig70976:411..1529-

>mRNA_H-elongata_contig70976.14761.1 ID=mRNA_H-elongata_contig70976.14761.1|Name=mRNA_H-elongata_contig70976.14761.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1164bp|location=Sequence derived from alignment at H-elongata_contig70976:411..1529- (Himanthalia elongata Himel1 dioecious)
GGCTTTCACGCGACCGGCGTAAACACTCGCTTTGGGTTCTTCCGGAGCCT
AAGCAAGAGGCAAGGGTCCGTGGTTGGTGAGGCCACGGAGGGTCCGGTCA
TGGAGGGCCCCGCGGCGGCAGAGGCGGCGAGTGCGTTACTGTACGGTACT
AATTGGTCCGTTACCTACAATAATGCCTCCAGTAGGTCGCGCGCGAAGCG
GGGCGGCGGTTCTAAGGCATCAAGCTCGAGGATGGAAATGCTGGGGTCAT
TGGAGCGCTCGCCGTCGAGCAGAATGAACTCACGCTTGGGGTATTTGGTA
ACTGATGACGCCAACGACGATGCGCCCAGGTTACAGCTCAGTGAACACGC
GGGCTTTCACGCGACCGGCGTAAACACTCGCTTTGGGTTCTTCCGGAGCC
TAAGCAAGAGGCAAGGGTCCGTGGTTGGTGAGGCCACGGAGGGTCCGGTC
ATGGAGGGCCCCGCGGCGGCAGAGGCGGCGAGTGCGTTACTGTACGGTAC
TAATTGGTCCGTTACCTACAATAATGCCTCCAGTAGGTCGCGCGCGAAGC
GGGGCGGCGGTTCTAAGGCATCAAGCTCGAGGATGGAAATGCTGGGGTCA
TTGGAGCGCTCGCCGTCGAGCAGAATGAACTCACGCTTGGGGTATTTGGT
AACTGATGACGCCAACGACGATGCGCCCAGGTTACAGCTCAGTGAACACG
CGGCACTTCTTCTCCTGGAGGCGAGCGTCTTCGTCAACGGCGAGCGGGAG
GCCCTAATCGCCAACCTCAGTAAGGCACTTCTTCTCCTGGAGGCGAGCGT
CTTCGTCAACGGCGAGCGGGAGGCCCTAATCGCCAACCTCAGTAAGCCGA
GTCAGGATGAATATGTCCAGGCACTCATTGGGTACGTCTGCTCGCCGCCC
CTCGACTTCGAGGCAGACGACTCCGCGTTGGTCAGCGGCAACAGAGCGTC
CAGCGGAGAGTACCCGGACCGCAAGTCGCCCGCGGACGCCGGGCCGGAGG
CAGCCCCGAGTCAGGATGAATATGTCCAGGCACTCATTGGGTACGTCTGC
TCGCCGCCCCTCGACTTCGAGGCAGACGACTCCGCGTTGGTCAGCGGCAA
CAGAGCGTCCAGCGGAGAGTACCCGGACCGCAAGTCGCCCGCGGACGCCG
GGCCGGAGGCAGCC
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