mRNA_H-elongata_contig70968.14758.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70968.14758.1
Unique NamemRNA_H-elongata_contig70968.14758.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig70968.14758.1 vs. uniprot
Match: D7G3X6_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3X6_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 1.100e-46
Identity = 80/107 (74.77%), Postives = 93/107 (86.92%), Query Frame = 1
Query:   16 RSRTFTLALFIIVVLLLYSDQNLMAPNLSAIAEDFGFSDEEKDRRLGGEIAVAFFGFGAPASLLVGWLTDFVDRRKLFVAITLIGEAGALATVWVTTYSQVKNKRRI 336
            RS  FTLAL  +VV+LL++DQNL+APNLSAIAE+FGF++EEKDR LGG+IAVAFFGFGAPASLLVGWLTD +DRRKLFVAI  IGE G LATV+VTT+SQ+   R I
Sbjct:   41 RSSMFTLALLTLVVVLLFADQNLLAPNLSAIAEEFGFNEEEKDRHLGGDIAVAFFGFGAPASLLVGWLTDVIDRRKLFVAIVAIGEMGTLATVFVTTFSQLFWTRAI 147          
BLAST of mRNA_H-elongata_contig70968.14758.1 vs. uniprot
Match: A0A6H5KP69_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP69_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 1.530e-42
Identity = 78/107 (72.90%), Postives = 93/107 (86.92%), Query Frame = 1
Query:   16 RSRTFTLALFIIVVLLLYSDQNLMAPNLSAIAEDFGFSDEEKDRRLGGEIAVAFFGFGAPASLLVGWLTDFVDRRKLFVAITLIGEAGALATVWVTTYSQVKNKRRI 336
            RS  FTLAL  +VV+LL++DQNL+APNLSAIAE+FGF++EEKDR LGG+IAVAFFGFGAPAS+LVGWLTD +DRRKLFVAI  +GE G LATV+VTT+SQ+   R I
Sbjct:   41 RSSMFTLALLTLVVVLLFADQNLLAPNLSAIAEEFGFNEEEKDRHLGGDIAVAFFGFGAPASVLVGWLTDVIDRRKLFVAIVALGEMGTLATVFVTTFSQLFWTRAI 147          
BLAST of mRNA_H-elongata_contig70968.14758.1 vs. uniprot
Match: A0A482RV73_9ARCH (MFS transporter n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RV73_9ARCH)

HSP 1 Score: 117 bits (294), Expect = 1.410e-28
Identity = 54/104 (51.92%), Postives = 75/104 (72.12%), Query Frame = 1
Query:    7 CNFRSRTFTLALFIIVVLLLYSDQNLMAPNLSAIAEDFGFSDEEKDRRLGGEIAVAFFGFGAPASLLVGWLTDFVDRRKLFVAITLIGEAGALATVWVTTYSQV 318
            C    R++T  +  + V  +Y+DQN++APNLSAIAEDFGFSD+E+D++LGG IAV FF  G PA+LL+G+L DF +R  LF  + ++GE+  L   WV TYSQ+
Sbjct:   74 CRLSPRSWTSVMICLTVFCIYADQNILAPNLSAIAEDFGFSDKERDQKLGGYIAVGFFIVGGPAALLIGYLADFCNRTVLFGLVVILGESSTLGAYWVQTYSQL 177          
BLAST of mRNA_H-elongata_contig70968.14758.1 vs. uniprot
Match: A0A1Z5KAQ2_FISSO (MFS domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KAQ2_FISSO)

HSP 1 Score: 118 bits (295), Expect = 1.540e-28
Identity = 59/103 (57.28%), Postives = 75/103 (72.82%), Query Frame = 1
Query:   37 ALFIIVVLLLYSDQNLMAPNLSAIAEDFGFSDEEKDRRLGGEIAVAFFGFGAPASLLVGWLTDFVDRRKLFVAITLIGEAGALATVWVTTYSQVKNKRRILSF 345
            ALF +  +LL++DQNLM+PNL+AIA++F F DE++D++LGGEIA+AFF  GAPAS LVG L D  +R KLF A   IGE G + T WV TYSQ+   R I  F
Sbjct:   86 ALFSVCTILLFADQNLMSPNLTAIAKEFNFDDEQRDKKLGGEIALAFFVLGAPASYLVGCLGDAYNRTKLFAATVCIGELGCILTYWVQTYSQLYVCRAITGF 188          
BLAST of mRNA_H-elongata_contig70968.14758.1 vs. uniprot
Match: A0A7S0X5V5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0X5V5_9CHLO)

HSP 1 Score: 112 bits (279), Expect = 3.270e-27
Identity = 52/101 (51.49%), Postives = 73/101 (72.28%), Query Frame = 1
Query:   16 RSRTFTLALFIIVVLLLYSDQNLMAPNLSAIAEDFGFSDEEKDRRLGGEIAVAFFGFGAPASLLVGWLTDFVDRRKLFVAITLIGEAGALATVWVTTYSQV 318
            R + +T+ L  +  + LY+DQNL++PNLSA+A+DFGF + EKD +LGG + +AFF  G+PASL++GWL+D V R +LF    L+GE   LAT WV TY Q+
Sbjct:  127 RVKYYTVGLLTLTSMFLYADQNLLSPNLSAVADDFGFDEREKDLKLGGWLQLAFFCVGSPASLIIGWLSDKVPRMRLFFITVLLGEGPCLATYWVKTYWQL 227          
BLAST of mRNA_H-elongata_contig70968.14758.1 vs. uniprot
Match: A0A2P6VRC8_9CHLO (MFS family transporter: sugar n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VRC8_9CHLO)

HSP 1 Score: 110 bits (275), Expect = 9.190e-26
Identity = 54/105 (51.43%), Postives = 74/105 (70.48%), Query Frame = 1
Query:   16 RSRTFTLALFIIVVLLLYSDQNLMAPNLSAIAEDFGFSDEEKDRRLGGEIAVAFFGFGAPASLLVGWLTDFVDRRKLFVAITLIGEAGALATVWVTTYSQVKNKR 330
            R R   ++LF +   LLY+DQNLMAPNL+AIA DFGF + ++DR LGG IA AF+  GAPA+LL GWL+D V+R++L  A  ++GE   + T++VT Y Q+   R
Sbjct:  124 RERMVMVSLFSLTAALLYADQNLMAPNLTAIATDFGFDEAQRDRMLGGVIAAAFYLVGAPAALLFGWLSDHVNRKRLLFAAVVLGEGPCMLTIFVTNYWQLFTLR 228          
BLAST of mRNA_H-elongata_contig70968.14758.1 vs. uniprot
Match: L1JZ53_GUITC (MFS domain-containing protein n=2 Tax=Geminigeraceae TaxID=589343 RepID=L1JZ53_GUITC)

HSP 1 Score: 108 bits (271), Expect = 1.410e-25
Identity = 52/100 (52.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query:   19 SRTFTLALFIIVVLLLYSDQNLMAPNLSAIAEDFGFSDEEKDRRLGGEIAVAFFGFGAPASLLVGWLTDFVDRRKLFVAITLIGEAGALATVWVTTYSQV 318
            S T+ + L  I+  LL++DQNLMAPNL+ IA DFGFSDEE+D +LGGEIA+ FF  G P +L +G+L D + R+ LFV +  +GE   L T++VT Y Q+
Sbjct:   27 SFTYDVFLLCIITALLFADQNLMAPNLTQIARDFGFSDEERDTKLGGEIALGFFVLGGPVALAIGYLADMMPRKMLFVTVVFLGEIPCLLTIFVTEYWQL 126          
BLAST of mRNA_H-elongata_contig70968.14758.1 vs. uniprot
Match: A0A7S0V9L3_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0V9L3_9CRYP)

HSP 1 Score: 108 bits (271), Expect = 1.750e-25
Identity = 50/86 (58.14%), Postives = 67/86 (77.91%), Query Frame = 1
Query:   52 VVLLLYSDQNLMAPNLSAIAEDFGFSDEEKDRRLGGEIAVAFFGFGAPASLLVGWLTDFVDRRKLFVAITLIGEAGALATVWVTTY 309
            + + L++DQN+MAPNL+AIA +FGFSD E+D +LGGEI+ AFF  G P +LLVGWLTD V+R+ LFVA+  +G   ALAT+ VT +
Sbjct:   50 LTMFLFADQNIMAPNLTAIAHEFGFSDRERDAKLGGEISFAFFVMGGPVALLVGWLTDLVERKVLFVALLFLGLCPALATILVTEF 135          
BLAST of mRNA_H-elongata_contig70968.14758.1 vs. uniprot
Match: I0YZR1_COCSC (MFS general substrate transporter n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YZR1_COCSC)

HSP 1 Score: 109 bits (272), Expect = 1.810e-25
Identity = 55/99 (55.56%), Postives = 72/99 (72.73%), Query Frame = 1
Query:   22 RTFTLALFIIVVLLLYSDQNLMAPNLSAIAEDFGFSDEEKDRRLGGEIAVAFFGFGAPASLLVGWLTDFVDRRKLFVAITLIGEAGALATVWVTTYSQV 318
            R + +A+F +   LLY+DQNLMAPNLSAIAE+FGF++EEK R LGG +A AFF  GAPA+LL+G+L D  +RR L   + L+GE   LAT +V  Y Q+
Sbjct:   57 RYYMVAIFTLTASLLYADQNLMAPNLSAIAEEFGFNEEEKVRYLGGYVAAAFFAVGAPAALLIGYLCDKFNRRNLLFIVVLLGEGPCLATFFVKRYWQL 155          
BLAST of mRNA_H-elongata_contig70968.14758.1 vs. uniprot
Match: A0A7S2YGU5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YGU5_9STRA)

HSP 1 Score: 106 bits (264), Expect = 2.090e-25
Identity = 53/107 (49.53%), Postives = 74/107 (69.16%), Query Frame = 1
Query:   16 RSRTFTLALFIIVVLLLYSDQNLMAPNLSAIAEDFGFSDEEKDRRLGGEIAVAFFGFGAPASLLVGWLTDFVDRRKLFVAITLIGEAGALATVWVTTYSQVKNKRRI 336
            R+  + L LF +  +LL++DQNLMAPNL+AIA +FGFS++E+D +LGG I++AFF  GAPAS  +G+LTD  +R  LF     +GE   LAT +V TY Q+   R +
Sbjct:  139 RTNAWALTLFSLSAILLFADQNLMAPNLTAIATEFGFSEQERDEKLGGHISLAFFCLGAPASFAIGYLTDSYNRSILFFVTVGLGELACLATYFVETYRQLFMTRAL 245          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70968.14758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3X6_ECTSI1.100e-4674.77MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KP69_9PHAE1.530e-4272.90MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A482RV73_9ARCH1.410e-2851.92MFS transporter n=1 Tax=archaeon TaxID=1906665 Rep... [more]
A0A1Z5KAQ2_FISSO1.540e-2857.28MFS domain-containing protein n=2 Tax=Fistulifera ... [more]
A0A7S0X5V5_9CHLO3.270e-2751.49Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A2P6VRC8_9CHLO9.190e-2651.43MFS family transporter: sugar n=1 Tax=Micractinium... [more]
L1JZ53_GUITC1.410e-2552.00MFS domain-containing protein n=2 Tax=Geminigerace... [more]
A0A7S0V9L3_9CRYP1.750e-2558.14Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
I0YZR1_COCSC1.810e-2555.56MFS general substrate transporter n=1 Tax=Coccomyx... [more]
A0A7S2YGU5_9STRA2.090e-2549.53Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70968contigH-elongata_contig70968:13..624 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score109.4
Seed ortholog evalue1.2e-21
Seed eggNOG ortholog248742.XP_005648424.1
EggNOG free text desc.Sugar (and other) transporter
EggNOG OGs34K9Z@3041,37M2K@33090,COG0477@1,KOG1330@2759
COG Functional cat.G
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionMFS family transporter: sugar
Ec32 orthologEc-19_000930.1
Exons2
Model size363
Cds size363
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931108.7174768-CDS-H-elongata_contig70968:12..2401622931108.7174768-CDS-H-elongata_contig70968:12..240Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70968 13..240 -
1691679701.6556969-CDS-H-elongata_contig70968:12..2401691679701.6556969-CDS-H-elongata_contig70968:12..240Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70968 13..240 -
1622931108.7360466-CDS-H-elongata_contig70968:489..6241622931108.7360466-CDS-H-elongata_contig70968:489..624Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70968 490..624 -
1691679701.66729-CDS-H-elongata_contig70968:489..6241691679701.66729-CDS-H-elongata_contig70968:489..624Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70968 490..624 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70968.14758.1prot_H-elongata_contig70968.14758.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70968 13..624 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70968.14758.1

>prot_H-elongata_contig70968.14758.1 ID=prot_H-elongata_contig70968.14758.1|Name=mRNA_H-elongata_contig70968.14758.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
MRCNFRSRTFTLALFIIVVLLLYSDQNLMAPNLSAIAEDFGFSDEEKDRR
LGGEIAVAFFGFGAPASLLVGWLTDFVDRRKLFVAITLIGEAGALATVWV
TTYSQVKNKRRILSFVARAR*
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mRNA from alignment at H-elongata_contig70968:13..624-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70968.14758.1 ID=mRNA_H-elongata_contig70968.14758.1|Name=mRNA_H-elongata_contig70968.14758.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=612bp|location=Sequence derived from alignment at H-elongata_contig70968:13..624- (Himanthalia elongata Himel1 dioecious)
ATGCGCTGCAATTTCAGGTCGAGGACATTCACGCTAGCGCTGTTCATCAT CGTTGTGTTGCTGCTGTATTCGGATCAGAACTTGATGGCTCCGAACCTGT CTGCTATCGCCGAAGACTTCGGCTTCTCTGACGAGGTTAGCGCATCCTGA TTGCCCTTGTCGACGCGATAGCGAGAGGCCCACTAACGACAACATCTTCC TCTTCCTCTAATGCTGCGAGCGCCTAGAGGTACTCCGGCATGACCATGGA TAATCCCAACGGTGGCTGTACGATTATGTAGGTGCAAACAACGTCCCGAA TCGGCTCCTGCCGGCCACCGATCGATTTTGGCACCCACGCCGCCGAAACT TGTGCGGTCTGTTGCGTGAAATCGCCTCACACAGGAGAAAGACCGTCGCC TCGGCGGCGAAATCGCTGTTGCGTTCTTCGGCTTTGGCGCGCCGGCGTCA CTGCTAGTCGGATGGCTCACGGACTTTGTCGATCGGCGTAAGCTGTTCGT AGCGATCACTTTGATTGGAGAAGCTGGGGCGCTAGCGACTGTTTGGGTCA CCACCTACTCTCAGGTGAAGAACAAGCGACGGATTTTGAGCTTTGTTGCC CGTGCCCGCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig70968:13..624-

>mRNA_H-elongata_contig70968.14758.1 ID=mRNA_H-elongata_contig70968.14758.1|Name=mRNA_H-elongata_contig70968.14758.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig70968:13..624- (Himanthalia elongata Himel1 dioecious)
ATGCGCTGCAATTTCAGGTCGAGGACATTCACGCTAGCGCTGTTCATCAT
CGTTGTGTTGCTGCTGTATTCGGATCAGAACTTGATGGCTCCGAACCTGT
CTGCTATCGCCGAAGACTTCGGCTTCTCTGACGAGATGCGCTGCAATTTC
AGGTCGAGGACATTCACGCTAGCGCTGTTCATCATCGTTGTGTTGCTGCT
GTATTCGGATCAGAACTTGATGGCTCCGAACCTGTCTGCTATCGCCGAAG
ACTTCGGCTTCTCTGACGAGGAGAAAGACCGTCGCCTCGGCGGCGAAATC
GCTGTTGCGTTCTTCGGCTTTGGCGCGCCGGCGTCACTGCTAGTCGGATG
GCTCACGGACTTTGTCGATCGGCGTAAGCTGTTCGTAGCGATCACTTTGA
TTGGAGAAGCTGGGGCGCTAGCGACTGTTTGGGTCACCACCTACTCTCAG
GTGAAGAACAAGCGACGGATTTTGAGCTTTGTTGCCCGTGCCCGCTGAGA
GAAAGACCGTCGCCTCGGCGGCGAAATCGCTGTTGCGTTCTTCGGCTTTG
GCGCGCCGGCGTCACTGCTAGTCGGATGGCTCACGGACTTTGTCGATCGG
CGTAAGCTGTTCGTAGCGATCACTTTGATTGGAGAAGCTGGGGCGCTAGC
GACTGTTTGGGTCACCACCTACTCTCAGGTGAAGAACAAGCGACGGATTT
TGAGCTTTGTTGCCCGTGCCCGCTGA
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