mRNA_H-elongata_contig70947.14753.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70947.14753.1
Unique NamemRNA_H-elongata_contig70947.14753.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig70947.14753.1 vs. uniprot
Match: D7FK93_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK93_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 3.420e-63
Identity = 113/223 (50.67%), Postives = 141/223 (63.23%), Query Frame = 1 
Query:    1 TAPVPAGAIDGVWRLCFCEGDFLQGIEVDMHGYLGRKQQVDVLIDCGAERIALGSSGLSSSLPKVVHGSLAYVPGTQTIIGTFDEEAAGIESLVLHAFLMDQDALGFHTMFHGKEGFLLFHAERSKRAMGRLSKPPGKRPGEASEAPGASTAAVAGEAKAKASPVLRLPVNPDLKLVGNEDTHKDRRLAVEETGRETGSFNTFMRYLETEVPTLYVVLVGPAL 669
            +AP+P   ++G+WRLCFCEGDFL GI+VD HGY+ R Q V++L D   E+I L SSGL SSLP  + G L+Y P TQT+ GTF+E   GIESL L AF++D DALGFHT+   K G LLFHAE+SK A  RLSK                            +    L +  D++L   ED H+D+RLAV+ETGRETGSFNTF+RYLE E   +Y V+ GP L
Sbjct:  122 SAPLPLQTMEGLWRLCFCEGDFLPGIDVDKHGYVARGQNVEILFDPEGEKITLASSGLGSSLPAAMEGGLSYTPETQTVTGTFEE--TGIESLDLRAFMIDDDALGFHTVSEDKHGILLFHAEKSKAAAARLSKAVXXXXXXXXXXXXXXXXXXXXXXXXXVAGKDLLDLVLDVQLASEEDVHEDKRLAVQETGRETGSFNTFIRYLEKEGGMIYAVVAGPIL 342
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70947.14753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FK93_ECTSI3.420e-6350.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70947contigH-elongata_contig70947:197..2648 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-17_003230.1
Exons5
Model size678
Cds size678
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70947.14753.1prot_H-elongata_contig70947.14753.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70947 197..2648 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931108.2377932-CDS-H-elongata_contig70947:196..3671622931108.2377932-CDS-H-elongata_contig70947:196..367Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70947 197..367 -
1691679701.4738362-CDS-H-elongata_contig70947:196..3671691679701.4738362-CDS-H-elongata_contig70947:196..367Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70947 197..367 -
1622931108.2570498-CDS-H-elongata_contig70947:663..8341622931108.2570498-CDS-H-elongata_contig70947:663..834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70947 664..834 -
1691679701.4832275-CDS-H-elongata_contig70947:663..8341691679701.4832275-CDS-H-elongata_contig70947:663..834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70947 664..834 -
1622931108.2707026-CDS-H-elongata_contig70947:1324..14051622931108.2707026-CDS-H-elongata_contig70947:1324..1405Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70947 1325..1405 -
1691679701.4943113-CDS-H-elongata_contig70947:1324..14051691679701.4943113-CDS-H-elongata_contig70947:1324..1405Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70947 1325..1405 -
1622931108.286628-CDS-H-elongata_contig70947:1945..20931622931108.286628-CDS-H-elongata_contig70947:1945..2093Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70947 1946..2093 -
1691679701.5077643-CDS-H-elongata_contig70947:1945..20931691679701.5077643-CDS-H-elongata_contig70947:1945..2093Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70947 1946..2093 -
1622931108.3048654-CDS-H-elongata_contig70947:2541..26481622931108.3048654-CDS-H-elongata_contig70947:2541..2648Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70947 2542..2648 -
1691679701.5171776-CDS-H-elongata_contig70947:2541..26481691679701.5171776-CDS-H-elongata_contig70947:2541..2648Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70947 2542..2648 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70947.14753.1

>prot_H-elongata_contig70947.14753.1 ID=prot_H-elongata_contig70947.14753.1|Name=mRNA_H-elongata_contig70947.14753.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=226bp
TAPVPAGAIDGVWRLCFCEGDFLQGIEVDMHGYLGRKQQVDVLIDCGAER
IALGSSGLSSSLPKVVHGSLAYVPGTQTIIGTFDEEAAGIESLVLHAFLM
DQDALGFHTMFHGKEGFLLFHAERSKRAMGRLSKPPGKRPGEASEAPGAS
TAAVAGEAKAKASPVLRLPVNPDLKLVGNEDTHKDRRLAVEETGRETGSF
NTFMRYLETEVPTLYVVLVGPALLR*
back to top

mRNA from alignment at H-elongata_contig70947:197..2648-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70947.14753.1 ID=mRNA_H-elongata_contig70947.14753.1|Name=mRNA_H-elongata_contig70947.14753.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2452bp|location=Sequence derived from alignment at H-elongata_contig70947:197..2648- (Himanthalia elongata Himel1 dioecious)
ACAGCCCCTGTCCCAGCGGGGGCCATAGACGGAGTCTGGCGCTTGTGCTT
CTGCGAGGGGGATTTTCTACAAGGTATCGAGGTGGACATGCACGGTTATC
TCGGCAGGTGCGCCTCCGCGGGCGATTGGAGTGGAGTGGAGTGAGGCACG
CCCGGGGTTACTGTCGTCGTTGTGATTTCTTGTTGTGACCGTTGTACCAT
GTGGCCCAGGGATCGCCGTGCTCCACCAACTCCGACTCAGGTAGTGTAGC
AAAGAGATCTCGAACGGCTAAATAATCCTTCATACTCCCTCTGATGCTGA
TGCTGATGCTGATGCTGTTGTTGATGTTGATGTTGTTATTCACACTTTAT
GTTGTTAATTCACTAGTGCTTTATGCAGATTGGATTGATCCCTTAATCGG
CTGGTGGCACAGCAGTATTAATAGCGCTATTAGGTGTTCGACTGTGTGGG
GCGGGCAAAAGACGAATGTTGCCCTCTGCGACCCACCCCAGCCCGGCCGC
CTGTCTGCCTGCTTCCCCCTCCTTTGGGGTCGGTCACGTTGCCACGATCG
CGAAGGAAGCAGCAGGTGGACGTACTGATCGACTGCGGCGCCGAGAGGAT
TGCCCTCGGCAGCAGCGGGCTGTCGTCTTCCCTGCCCAAGGTTGTACACG
GTAGCCTGGCCTACGTGCCGGGGACGCAGACGATCATCGGCACGTTTGAC
GAGGTACTGGTGCTTGTACACTCGTTGACCCTGCCGTCCTTTTGCGGTTG
TCAAGGGTTACCCCAGGCGAAACACATGAAAACTCCCCCGTCCTCCTTCC
CCCTTGATTACAGACTCAGTGGGTGCAAATCGCTGTTTAGTTTTCGCGGA
GCACAGATGCAGTGCACAAACAGGTTCACTAACAGTTGGTGTCGCCTCAC
GTTGTCTACCACCCTTACCCTAACCCTTCTCTCTTCCCCAGCCGGGTTTT
GTCGTCAGTGTGGGGCTAAATAGTAAGCTTGGTATGATATTTCCACACTG
CTCGACGCTACACACTACACTATACTGCGCTAGTACAATCTTCGTCCGAT
CTCTTCGTTTAGTGGCACCAGTCTCGCCGAAAACGCGTTAGTCCCTGTGT
ATTTTCTCTCTCTTTGTGTCTACCAATACCTCTGCCTGTGTCCATATATG
TATGTGTGTGTCTTGTGTATGCGTTTGTCATCGTGTCTTACGTTGGAATG
CACGGGTCGTCGTGAATCCCCGTTGACCTTGACCCTTTGGCAGGAGGCGG
CGGGGATCGAATCTCTCGTCCTGCACGCGTTTCTGATGGATCAGGACGCC
CTGGGTTTCCACACCATGTTCCACGTGAGTCACGACAAGGGAGAGCGGGG
AGGGGGTGGGTAAGCCCGAGAACCATGACGTTGTCATGTTACTTTCTCGC
TTTTGGGTGCACGGACCCAATCTTGCCAGCCGCAGTAGTTTTGCCTCCGT
TTTTGGATGGGATTCCTCGCGGAGGCCGACGTCCCGCGGGGCTATCGGGC
GAGCGATTGTGTTGACAATGGGGGCGGACGGGGTTCGCTTCTTGGCTAAC
CGTCGTTGGATGATTAACTATCGAGATAAGGGTTTTCCTATAGCAGCGGA
GGCGATTAGAGGATCCGGGTAGACACCAAGTGATGACGATGCCACTCGAG
GATCTCTCTATCTGTTTTTACTCCTTAAGCCTTGTGTGCTAAGCGGATGC
AAGCCTCGCCGTGTCGGCCGTTGACCCTGTTTTGAAGTTTCCAGCCCGTT
TGGAAAAATATTTATTGTTGGTTCTCAGTAAGTAGCCATTTCTGCGCGTC
GGTGGCGTCGACAGGGCAAGGAAGGCTTTCTCCTCTTCCACGCGGAAAGG
AGCAAGCGCGCGATGGGGCGATTGTCGAAGCCTCCCGGCAAGCGGCCCGG
TGAGGCATCGGAAGCTCCGGGTGCCTCCACAGCCGCCGTCGCCGGCGAGG
CGAAGGCAAAGGCGAGTCCCGTCCTCCGTCTTCCTGTCTGCAGCCTTGTT
GCAGATAGATCGCATTTTGACGCCTCCCACCGAGCTTGCGCTTTCTTTTG
TTGGAGGCCACGAGAACGGCGATGTCATGCATGTATCCCTGTTTTCGATC
TGGTAAGAGATGTGATTGGTCCCGTGATCGATATCAGTTGGTGAGTTCTG
TTCTTTGTTCCTCGCTCTTCGTGTGTACCCATCGTATTCCTGTTGGATCC
GGCTGGATCTGTAGGAGTCTGCCTCCGACCCCGTCCCGTCCCCTGTCCCC
ATACCCATCCCATAATTCGACGCCTCCCAAGGTGAACCCGGATCTGAAGC
TCGTCGGCAACGAGGACACGCACAAGGACAGGAGGTTGGCGGTCGAGGAG
ACGGGGAGGGAGACGGGCAGCTTCAACACTTTCATGCGGTACCTGGAGAC
GGAGGTGCCGACCCTCTACGTTGTCCTGGTCGGACCCGCACTCCTGAGGT
GA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig70947:197..2648-

>mRNA_H-elongata_contig70947.14753.1 ID=mRNA_H-elongata_contig70947.14753.1|Name=mRNA_H-elongata_contig70947.14753.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1356bp|location=Sequence derived from alignment at H-elongata_contig70947:197..2648- (Himanthalia elongata Himel1 dioecious)
ACAGCCCCTGTCCCAGCGGGGGCCATAGACGGAGTCTGGCGCTTGTGCTT
CTGCGAGGGGGATTTTCTACAAGGTATCGAGGTGGACATGCACGGTTATC
TCGGCAGACAGCCCCTGTCCCAGCGGGGGCCATAGACGGAGTCTGGCGCT
TGTGCTTCTGCGAGGGGGATTTTCTACAAGGTATCGAGGTGGACATGCAC
GGTTATCTCGGCAGGAAGCAGCAGGTGGACGTACTGATCGACTGCGGCGC
CGAGAGGATTGCCCTCGGCAGCAGCGGGCTGTCGTCTTCCCTGCCCAAGG
TTGTACACGGTAGCCTGGCCTACGTGCCGGGGACGCAGACGATCATCGGC
ACGTTTGACGAGGAAGCAGCAGGTGGACGTACTGATCGACTGCGGCGCCG
AGAGGATTGCCCTCGGCAGCAGCGGGCTGTCGTCTTCCCTGCCCAAGGTT
GTACACGGTAGCCTGGCCTACGTGCCGGGGACGCAGACGATCATCGGCAC
GTTTGACGAGGAGGCGGCGGGGATCGAATCTCTCGTCCTGCACGCGTTTC
TGATGGATCAGGACGCCCTGGGTTTCCACACCATGTTCCACGAGGCGGCG
GGGATCGAATCTCTCGTCCTGCACGCGTTTCTGATGGATCAGGACGCCCT
GGGTTTCCACACCATGTTCCACGGCAAGGAAGGCTTTCTCCTCTTCCACG
CGGAAAGGAGCAAGCGCGCGATGGGGCGATTGTCGAAGCCTCCCGGCAAG
CGGCCCGGTGAGGCATCGGAAGCTCCGGGTGCCTCCACAGCCGCCGTCGC
CGGCGAGGCGAAGGCAAAGGCGAGTCCCGTCCTCCGTCTTCCTGGCAAGG
AAGGCTTTCTCCTCTTCCACGCGGAAAGGAGCAAGCGCGCGATGGGGCGA
TTGTCGAAGCCTCCCGGCAAGCGGCCCGGTGAGGCATCGGAAGCTCCGGG
TGCCTCCACAGCCGCCGTCGCCGGCGAGGCGAAGGCAAAGGCGAGTCCCG
TCCTCCGTCTTCCTGTGAACCCGGATCTGAAGCTCGTCGGCAACGAGGAC
ACGCACAAGGACAGGAGGTTGGCGGTCGAGGAGACGGGGAGGGAGACGGG
CAGCTTCAACACTTTCATGCGGTACCTGGAGACGGAGGTGCCGACCCTCT
ACGTTGTCCTGGTCGGACCCGCACTCCTGAGGTGAGTGAACCCGGATCTG
AAGCTCGTCGGCAACGAGGACACGCACAAGGACAGGAGGTTGGCGGTCGA
GGAGACGGGGAGGGAGACGGGCAGCTTCAACACTTTCATGCGGTACCTGG
AGACGGAGGTGCCGACCCTCTACGTTGTCCTGGTCGGACCCGCACTCCTG
AGGTGA
back to top