mRNA_H-elongata_contig70920.14749.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70920.14749.1
Unique NamemRNA_H-elongata_contig70920.14749.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig70920.14749.1 vs. uniprot
Match: D7G8V9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8V9_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 3.440e-52
Identity = 86/114 (75.44%), Postives = 97/114 (85.09%), Query Frame = 1
Query:   10 VCSASAFVPTGPFVGSRMASVAQQPSNSALSMAAQDMVGSSAPLGFFDPMGFSKGSEERLNEYRESELKHGRTAMLGVVGFLTQEAWHPLYNGQLSSNPCKAIFEVPPEGLLQV 351
            + SASAFVP+  FVGS ++SV +  S++A+SMAA DMVG+SAPLGFFDPMGFSKG  ERLN YRE+ELKHGRTAML VVGFLTQE WHPLYNG LSSNP KAI EVPPEGL Q+
Sbjct:   11 LASASAFVPSASFVGSPVSSVTRPASSTAVSMAASDMVGASAPLGFFDPMGFSKGPAERLNAYREAELKHGRTAMLAVVGFLTQENWHPLYNGGLSSNPVKAITEVPPEGLFQI 124          
BLAST of mRNA_H-elongata_contig70920.14749.1 vs. uniprot
Match: A0A7S0XDX8_9STRA (Hypothetical protein n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XDX8_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.060e-28
Identity = 53/80 (66.25%), Postives = 64/80 (80.00%), Query Frame = 1
Query:  115 DMVGSSAPLGFFDPMGFSKG-SEERLNEYRESELKHGRTAMLGVVGFLTQEAWHPLYNGQLSSNPCKAIFEVPPEGLLQV 351
            ++VG+SAPLGFFDP GFSKG S+E L +YRESELKHGR AML V+G+LTQE +HP Y G+LS NP  A  EVPP G +Q+
Sbjct:   37 ELVGASAPLGFFDPFGFSKGVSDETLFKYRESELKHGRVAMLAVLGWLTQERFHPFYEGKLSGNPLVAFGEVPPLGFVQI 116          
BLAST of mRNA_H-elongata_contig70920.14749.1 vs. uniprot
Match: I2CPJ1_NANGC (Protein fucoxanthin chlorophyll a c protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPJ1_NANGC)

HSP 1 Score: 108 bits (271), Expect = 2.620e-27
Identity = 58/118 (49.15%), Postives = 75/118 (63.56%), Query Frame = 1
Query:    1 ANNVCSASAFVPTGPFVGSRMASVAQQPSNSALSMAAQDMVGSSAPLGFFDPMGFS-KGSEERLNEYRESELKHGRTAMLGVVGFLTQEAWHPLYNGQLSSNPCKAIFEVPPEGLLQV 351
            A  + S SAFVP  P             +   ++M    M+GSSAP   FDP+GF+ K  ++ LN+YRESELKHGR AML V+G++ QE WHPLY+G+LSSNP KA+ EVP  G  Q+
Sbjct:   12 AVTMASVSAFVPPAPSAPR---------TRGVVNMGLDGMIGSSAPFKNFDPLGFAAKADQKTLNKYRESELKHGRVAMLAVLGWVVQEVWHPLYDGKLSSNPLKALTEVPLIGWAQI 120          
BLAST of mRNA_H-elongata_contig70920.14749.1 vs. uniprot
Match: A0A7S0E1K9_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0E1K9_9EUKA)

HSP 1 Score: 105 bits (263), Expect = 2.790e-26
Identity = 56/116 (48.28%), Postives = 76/116 (65.52%), Query Frame = 1
Query:   10 VCSA-SAFVPTGPFVGSRMASVAQQPSNSALSMAAQDMVGSSAPLGFFDPMGFSK-GSEERLNEYRESELKHGRTAMLGVVGFLTQEAWHPLYNGQLSSNPCKAIFEVPPEGLLQV 351
            +CSA +AF PT   V    +SVA Q       M    ++G  APL +FDP+GFSK  S E + +YRE+ELKHGR AML   G +TQ+AWHPL++G+LS+NP  AI + P  G++Q+
Sbjct:    4 LCSAVTAFAPTPVLVRPASSSVAVQ-------MKVGGLIGDCAPLAYFDPLGFSKDASPETMKKYREAELKHGRVAMLAAWGMITQDAWHPLFDGKLSANPLLAIIQTPKLGVIQI 112          
BLAST of mRNA_H-elongata_contig70920.14749.1 vs. uniprot
Match: A0A7S3AG67_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AG67_9EUKA)

HSP 1 Score: 103 bits (258), Expect = 2.330e-25
Identity = 49/80 (61.25%), Postives = 61/80 (76.25%), Query Frame = 1
Query:  115 DMVGSSAPLGFFDPMGFSK-GSEERLNEYRESELKHGRTAMLGVVGFLTQEAWHPLYNGQLSSNPCKAIFEVPPEGLLQV 351
            DMVGSSAPLGFFDP+GFSK  S E + ++RE+ELKHGR AML V G +T + +HPL+ GQ SSNP  A+ +VP  G LQ+
Sbjct:   47 DMVGSSAPLGFFDPLGFSKDASPETMKKFREAELKHGRVAMLAVFGMITADKFHPLFGGQCSSNPLLALTQVPKLGWLQI 126          
BLAST of mRNA_H-elongata_contig70920.14749.1 vs. uniprot
Match: Q2IA68_ISOGA (Chloroplast light harvesting protein isoform 11 n=1 Tax=Isochrysis galbana TaxID=37099 RepID=Q2IA68_ISOGA)

HSP 1 Score: 102 bits (254), Expect = 6.940e-25
Identity = 51/93 (54.84%), Postives = 65/93 (69.89%), Query Frame = 1
Query:   76 QQPSNSALSMAAQDMVGSSAPLGFFDPMGFSK-GSEERLNEYRESELKHGRTAMLGVVGFLTQEAWHPLYNGQLSSNPCKAIFEVPPEGLLQV 351
            QQP+   +    + MVG SAPLGFFDP GFSK  S   + ++RE+ELKHGR AML   G +T + +HPLY+G+LSSNP  AI +VP  GLLQ+
Sbjct:   24 QQPACQGIQAKIKGMVGDSAPLGFFDPFGFSKEASPASMAKFREAELKHGRVAMLASAGMITADKFHPLYDGKLSSNPLLAISQVPKLGLLQI 116          
BLAST of mRNA_H-elongata_contig70920.14749.1 vs. uniprot
Match: A0A7S3IA89_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Favella ehrenbergii TaxID=182087 RepID=A0A7S3IA89_9SPIT)

HSP 1 Score: 99.8 bits (247), Expect = 5.120e-24
Identity = 47/80 (58.75%), Postives = 60/80 (75.00%), Query Frame = 1
Query:  115 DMVGSSAPLGFFDPMGFSK-GSEERLNEYRESELKHGRTAMLGVVGFLTQEAWHPLYNGQLSSNPCKAIFEVPPEGLLQV 351
            DMVG+  PLGFFDP+GFSK  S   + ++RE+ELKHGR AML   G +T + +HPLY+G+LSSNP  AI +VP  GLLQ+
Sbjct:   19 DMVGACKPLGFFDPLGFSKDASPASMAKFREAELKHGRVAMLACAGMITADKFHPLYDGKLSSNPLLAIAQVPKLGLLQI 98          
BLAST of mRNA_H-elongata_contig70920.14749.1 vs. uniprot
Match: A0A0G4GBS7_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GBS7_VITBC)

HSP 1 Score: 99.8 bits (247), Expect = 5.610e-23
Identity = 45/79 (56.96%), Postives = 61/79 (77.22%), Query Frame = 1
Query:  118 MVGSSAPLGFFDPMGFSKG-SEERLNEYRESELKHGRTAMLGVVGFLTQEAWHPLYNGQLSSNPCKAIFEVPPEGLLQV 351
            ++GSSAPLGFFDP+GF+K  S + +   RE ELKHGR AM  V+G++TQ  +HPLY G+LS++P KAI EVP  G++Q+
Sbjct:   99 LIGSSAPLGFFDPLGFTKNKSTQEIARLRECELKHGRLAMFAVLGWMTQTVFHPLYGGKLSADPLKAITEVPAPGIIQL 177          
BLAST of mRNA_H-elongata_contig70920.14749.1 vs. uniprot
Match: A0A7S3TFW5_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TFW5_EMIHU)

HSP 1 Score: 96.3 bits (238), Expect = 2.340e-22
Identity = 45/79 (56.96%), Postives = 58/79 (73.42%), Query Frame = 1
Query:  118 MVGSSAPLGFFDPMGFSK-GSEERLNEYRESELKHGRTAMLGVVGFLTQEAWHPLYNGQLSSNPCKAIFEVPPEGLLQV 351
            MVG   PLG+FDP+GFSK  S E + ++RE+ELKHGR AML   G +T + +HPL+ G+LSSNP  AI +VP  GLLQ+
Sbjct:   49 MVGDCKPLGYFDPLGFSKDASPETMAKFREAELKHGRVAMLACAGMITADKFHPLFGGKLSSNPLLAITQVPKLGLLQI 127          
BLAST of mRNA_H-elongata_contig70920.14749.1 vs. uniprot
Match: A0A7S4B2U4_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B2U4_CHRCT)

HSP 1 Score: 95.9 bits (237), Expect = 3.160e-22
Identity = 45/79 (56.96%), Postives = 56/79 (70.89%), Query Frame = 1
Query:  118 MVGSSAPLGFFDPMGFSK-GSEERLNEYRESELKHGRTAMLGVVGFLTQEAWHPLYNGQLSSNPCKAIFEVPPEGLLQV 351
            +VG SAPLGFFDP+G++K  S   L +YRE ELKHGR AML  +G +  + WHPLY G  S+NP  AI +VP  GLLQ+
Sbjct:   55 LVGDSAPLGFFDPLGYTKKASPADLKKYRECELKHGRVAMLASMGMVVADFWHPLYGGGNSANPLVAITQVPKAGLLQI 133          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70920.14749.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8V9_ECTSI3.440e-5275.44Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A7S0XDX8_9STRA1.060e-2866.25Hypothetical protein n=2 Tax=Chromulina nebulosa T... [more]
I2CPJ1_NANGC2.620e-2749.15Protein fucoxanthin chlorophyll a c protein n=1 Ta... [more]
A0A7S0E1K9_9EUKA2.790e-2648.28Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A7S3AG67_9EUKA2.330e-2561.25Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
Q2IA68_ISOGA6.940e-2554.84Chloroplast light harvesting protein isoform 11 n=... [more]
A0A7S3IA89_9SPIT5.120e-2458.75Hypothetical protein (Fragment) n=1 Tax=Favella eh... [more]
A0A0G4GBS7_VITBC5.610e-2356.96Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S3TFW5_EMIHU2.340e-2256.96Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A7S4B2U4_CHRCT3.160e-2256.96Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70920contigH-elongata_contig70920:1734..2959 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score173.3
Seed ortholog evalue6.7e-41
Seed eggNOG ortholog2880.D7G8V9
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2CSK6@1,2S49Q@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-15_004430.1
Exons2
Model size360
Cds size360
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931107.7770965-CDS-H-elongata_contig70920:1733..19941622931107.7770965-CDS-H-elongata_contig70920:1733..1994Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70920 1734..1994 +
1691679701.2940097-CDS-H-elongata_contig70920:1733..19941691679701.2940097-CDS-H-elongata_contig70920:1733..1994Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70920 1734..1994 +
1622931107.7951674-CDS-H-elongata_contig70920:2860..29591622931107.7951674-CDS-H-elongata_contig70920:2860..2959Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70920 2861..2959 +
1691679701.3053515-CDS-H-elongata_contig70920:2860..29591691679701.3053515-CDS-H-elongata_contig70920:2860..2959Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70920 2861..2959 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70920.14749.1prot_H-elongata_contig70920.14749.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70920 1734..2959 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70920.14749.1

>prot_H-elongata_contig70920.14749.1 ID=prot_H-elongata_contig70920.14749.1|Name=mRNA_H-elongata_contig70920.14749.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
ANNVCSASAFVPTGPFVGSRMASVAQQPSNSALSMAAQDMVGSSAPLGFF
DPMGFSKGSEERLNEYRESELKHGRTAMLGVVGFLTQEAWHPLYNGQLSS
NPCKAIFEVPPEGLLQVKD*
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mRNA from alignment at H-elongata_contig70920:1734..2959+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70920.14749.1 ID=mRNA_H-elongata_contig70920.14749.1|Name=mRNA_H-elongata_contig70920.14749.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1226bp|location=Sequence derived from alignment at H-elongata_contig70920:1734..2959+ (Himanthalia elongata Himel1 dioecious)
GCTAACAACGTCTGCAGCGCTTCGGCGTTCGTGCCTACGGGCCCCTTTGT CGGCTCACGGATGGCGTCGGTGGCGCAGCAGCCTTCAAATTCTGCCCTGT CGATGGCTGCCCAGGACATGGTCGGCTCCAGCGCTCCGTTAGGGTTCTTC GATCCGATGGGGTTCTCCAAGGGATCCGAGGAGCGCCTGAACGAGTACCG CGAGTCAGAGCTCAAGCACGGTCGTACGGCTATGCTGGGGGTGGTCGGGT TCCTCACGCAGGTTGGTCATACTGTTATACTTTGATCTGCTTTTCGCTGG AGTTAAGGGTTGTGGTACGATGGGGAATCCGCGACAGCGTCCTTGCGCGC TCGAAGCGTTCATGTGGGTTTCCATAGCAAAGAGGCTTTCACATAATACA ATACAGCAAAACACGGAGGATGTTAGGCCAGCGTTTGGACCTGGCGGTCC TGTGGAGCTGTGTCAAGCCTGTCGCGTTGGCTGGCTGGGATGCTGCGCTG CCTGTGCAGAATGGGAATACTAGTAGTATTAATATAATGGGAAAAGGGGC CGAAAAATTTATAAACACTTGCTGATGCTGCGATACTGCTGCATATTGTA GTGCCCTCCTTTGTACTTTGGTCATTACTGTAATTTCTTGTCTGCAGTAT GTAACAGTGTCATTTTATATCAAAATATTCGCAGGAACAGCTGTTGTTCG CCTCGAGCTTCGCTGTAAAGCGGCGTGCTATATGTGGCCCCCGCGTTGTA AGACTTAATGTTCAGAGATGGAAGCTCGGCGGGTGATGGTAGATCTGTTG TTGTGGAAAAAGTACAGGCGGGTCTGGGTCTAGTTCATGTAGAATTTTCT GAAACAAATCCAGCAAGCGGACGGCGAATAATCCCACACTGTATGGCTCA AGGGATCCTCGGTCCGATTACCGGTCTCCGATCTGTTCTGTTCTGTCCTA GTATATGCCGGTATGACTTGGTTGAGAATTTCTCGTACCCTGTCTCCCCT ACGGTTTGACGTGATTGACATGGCTGACACGACGCTTGGCCCTCTGCTCT TGATGCGTGTGCACGAAATTTGTTGTCTTAACACACACGCGTCTCTTCTA CACCGCGTGCCTGTCTCTGGGTCGCAGGAGGCTTGGCACCCGTTGTACAA CGGTCAGCTATCCTCCAACCCTTGCAAGGCTATTTTCGAGGTGCCTCCGG AGGGCCTCTTGCAGGTGAAGGACTAG
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Coding sequence (CDS) from alignment at H-elongata_contig70920:1734..2959+

>mRNA_H-elongata_contig70920.14749.1 ID=mRNA_H-elongata_contig70920.14749.1|Name=mRNA_H-elongata_contig70920.14749.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig70920:1734..2959+ (Himanthalia elongata Himel1 dioecious)
GCTAACAACGTCTGCAGCGCTTCGGCGTTCGTGCCTACGGGCCCCTTTGT
CGGCTCACGGATGGCGTCGGTGGCGCAGCAGCCTTCAAATTCTGCCCTGT
CGATGGCTGCCCAGGACATGGTCGGCTCCAGCGCTCCGTTAGGGTTCTTC
GATCCGATGGGGTTCTCCAAGGGATCCGAGGAGCGCCTGAACGAGTACCG
CGAGTCAGAGCTCAAGCACGGTCGTACGGCTATGCTGGGGGTGGTCGGGT
TCCTCACGCAGGCTAACAACGTCTGCAGCGCTTCGGCGTTCGTGCCTACG
GGCCCCTTTGTCGGCTCACGGATGGCGTCGGTGGCGCAGCAGCCTTCAAA
TTCTGCCCTGTCGATGGCTGCCCAGGACATGGTCGGCTCCAGCGCTCCGT
TAGGGTTCTTCGATCCGATGGGGTTCTCCAAGGGATCCGAGGAGCGCCTG
AACGAGTACCGCGAGTCAGAGCTCAAGCACGGTCGTACGGCTATGCTGGG
GGTGGTCGGGTTCCTCACGCAGGAGGCTTGGCACCCGTTGTACAACGGTC
AGCTATCCTCCAACCCTTGCAAGGCTATTTTCGAGGTGCCTCCGGAGGGC
CTCTTGCAGGTGAAGGACTAGGAGGCTTGGCACCCGTTGTACAACGGTCA
GCTATCCTCCAACCCTTGCAAGGCTATTTTCGAGGTGCCTCCGGAGGGCC
TCTTGCAGGTGAAGGACTAG
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