mRNA_H-elongata_contig70875.14746.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70875.14746.1
Unique NamemRNA_H-elongata_contig70875.14746.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig70875.14746.1 vs. uniprot
Match: A0A6H5JI70_9PHAE (5'-nucleotidase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI70_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 2.110e-12
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 1
Query:    1 VLSDFDRTLTKFWVNGRMGYSCHTVIGSSELLSEEYRTKTAGLRNRFYPME 153
            ++SDFD TLTKFWVNG+ G SCH VI  S LL E +  +T  LRN +YP+E
Sbjct:   44 IISDFDFTLTKFWVNGKRGDSCHAVIDGSGLLGEGFHKRTWELRNHYYPLE 94          
BLAST of mRNA_H-elongata_contig70875.14746.1 vs. uniprot
Match: D8LDF4_ECTSI (5'-nucleotidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDF4_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 4.320e-11
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 1
Query:    7 SDFDRTLTKFWVNGRMGYSCHTVIGSSELLSEEYRTKTAGLRNRFYPME 153
            +DFD TLTKFWVNG+ G SCH VI  S LL E +  +T+ LR+ +YP+E
Sbjct:   12 TDFDFTLTKFWVNGKRGDSCHAVIDESGLLGEGFHKRTSELRDHYYPLE 60          
BLAST of mRNA_H-elongata_contig70875.14746.1 vs. uniprot
Match: A0A7S3LZW9_9STRA (5'-nucleotidase n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LZW9_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.940e-8
Identity = 24/51 (47.06%), Postives = 36/51 (70.59%), Query Frame = 1
Query:    1 VLSDFDRTLTKFWVNGRMGYSCHTVIGSSELLSEEYRTKTAGLRNRFYPME 153
            V+SDFD T+TKF++NG  G SCH +I    L++ EY  +  GL+ ++YP+E
Sbjct:   76 VVSDFDFTITKFYMNGVRGASCHKIIEDCGLMAAEYHDEAQGLQAKYYPLE 126          
BLAST of mRNA_H-elongata_contig70875.14746.1 vs. uniprot
Match: A0A0L0RX76_ALLM3 (5'-nucleotidase n=2 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0RX76_ALLM3)

HSP 1 Score: 56.6 bits (135), Expect = 5.160e-8
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 1
Query:    1 VLSDFDRTLTKFWVNGRMGYSCHTVIGSSELLSEEYRTKTAGLRNRFYPME 153
            V+SDFD T+TKFWVNG  G S H V+  S ++S +++     L N +YPME
Sbjct:  121 VVSDFDMTMTKFWVNGSRGPSSHGVVERSSVVSPKFKAFARELYNTYYPME 171          
BLAST of mRNA_H-elongata_contig70875.14746.1 vs. uniprot
Match: UPI001FB77491 (cytosolic 5'-nucleotidase 3-like n=1 Tax=Mugil cephalus TaxID=48193 RepID=UPI001FB77491)

HSP 1 Score: 55.5 bits (132), Expect = 1.170e-7
Identity = 24/51 (47.06%), Postives = 37/51 (72.55%), Query Frame = 1
Query:    1 VLSDFDRTLTKFWVNGRMGYSCHTVIGSSELLSEEYRTKTAGLRNRFYPME 153
            V+SDFDRTLT+F  NG+   +CH ++ +S+L+S + R K   LR+ +YP+E
Sbjct:   35 VISDFDRTLTRFAHNGKRCPTCHDILDNSKLISSDCREKLEELRDTYYPIE 85          
BLAST of mRNA_H-elongata_contig70875.14746.1 vs. uniprot
Match: A7SFU1_NEMVE (5'-nucleotidase n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7SFU1_NEMVE)

HSP 1 Score: 55.1 bits (131), Expect = 1.630e-7
Identity = 23/51 (45.10%), Postives = 35/51 (68.63%), Query Frame = 1
Query:    1 VLSDFDRTLTKFWVNGRMGYSCHTVIGSSELLSEEYRTKTAGLRNRFYPME 153
            +++DFD+TLTKF +NG  G + H V+ +S+   E YR K   LRN ++P+E
Sbjct:   41 IVTDFDKTLTKFIMNGTQGCTVHGVLETSKYFPESYREKCLALRNHYHPIE 91          
BLAST of mRNA_H-elongata_contig70875.14746.1 vs. uniprot
Match: A0A507E5G5_9FUNG (5'-nucleotidase n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507E5G5_9FUNG)

HSP 1 Score: 54.3 bits (129), Expect = 3.200e-7
Identity = 20/51 (39.22%), Postives = 33/51 (64.71%), Query Frame = 1
Query:    1 VLSDFDRTLTKFWVNGRMGYSCHTVIGSSELLSEEYRTKTAGLRNRFYPME 153
            ++SDFD T++K+WVNG      H V+  S  ++EE+  KT  +  ++YP+E
Sbjct:   60 IISDFDMTISKYWVNGERNIGSHRVLALSSRVTEEFTEKTTAIYKKYYPIE 110          
BLAST of mRNA_H-elongata_contig70875.14746.1 vs. uniprot
Match: A0A6P8IMA7_ACTTE (5'-nucleotidase n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IMA7_ACTTE)

HSP 1 Score: 53.5 bits (127), Expect = 6.170e-7
Identity = 23/51 (45.10%), Postives = 36/51 (70.59%), Query Frame = 1
Query:    1 VLSDFDRTLTKFWVNGRMGYSCHTVIGSSELLSEEYRTKTAGLRNRFYPME 153
            ++SDFD+TLTKF VNG  G + H V+ +S+   E YR K   L+++++P+E
Sbjct:   80 IVSDFDKTLTKFKVNGLQGCTVHGVLETSKHFPESYREKALELKDKYHPIE 130          
BLAST of mRNA_H-elongata_contig70875.14746.1 vs. uniprot
Match: A0A8J2KQS9_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2KQS9_9HEXA)

HSP 1 Score: 52.8 bits (125), Expect = 1.120e-6
Identity = 21/51 (41.18%), Postives = 37/51 (72.55%), Query Frame = 1
Query:    1 VLSDFDRTLTKFWVNGRMGYSCHTVIGSSELLSEEYRTKTAGLRNRFYPME 153
            +++DFD TLT+F  +G    +CH ++ SS L+SEE++ ++  L N++YP+E
Sbjct:   43 MITDFDMTLTRFHQDGEKCDTCHGILHSSSLMSEEFKKRSQDLFNKYYPIE 93          
BLAST of mRNA_H-elongata_contig70875.14746.1 vs. uniprot
Match: UPI0009E22FA7 (cytosolic 5'-nucleotidase 3-like isoform X1 n=2 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E22FA7)

HSP 1 Score: 52.8 bits (125), Expect = 1.160e-6
Identity = 24/51 (47.06%), Postives = 34/51 (66.67%), Query Frame = 1
Query:    1 VLSDFDRTLTKFWVNGRMGYSCHTVIGSSELLSEEYRTKTAGLRNRFYPME 153
            V+SDFD+TLTKF +NG  G + + VI S +L  E YR K   L+ ++ P+E
Sbjct:   77 VISDFDKTLTKFNINGEKGCTVYGVIESCKLFPESYREKAKELKEKYMPIE 127          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70875.14746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JI70_9PHAE2.110e-1258.825'-nucleotidase n=1 Tax=Ectocarpus sp. CCAP 1310/3... [more]
D8LDF4_ECTSI4.320e-1157.145'-nucleotidase n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A7S3LZW9_9STRA1.940e-847.065'-nucleotidase n=2 Tax=Spumella elongata TaxID=89... [more]
A0A0L0RX76_ALLM35.160e-849.025'-nucleotidase n=2 Tax=Allomyces macrogynus (stra... [more]
UPI001FB774911.170e-747.06cytosolic 5'-nucleotidase 3-like n=1 Tax=Mugil cep... [more]
A7SFU1_NEMVE1.630e-745.105'-nucleotidase n=2 Tax=Nematostella vectensis Tax... [more]
A0A507E5G5_9FUNG3.200e-739.225'-nucleotidase n=1 Tax=Powellomyces hirtus TaxID=... [more]
A0A6P8IMA7_ACTTE6.170e-745.105'-nucleotidase n=1 Tax=Actinia tenebrosa TaxID=61... [more]
A0A8J2KQS9_9HEXA1.120e-641.18Hypothetical protein n=1 Tax=Allacma fusca TaxID=3... [more]
UPI0009E22FA71.160e-647.06cytosolic 5'-nucleotidase 3-like isoform X1 n=2 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70875contigH-elongata_contig70875:435..587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.5
Seed ortholog evalue8.4e-09
Seed eggNOG ortholog2880.D8LDF4
KEGG rclassRC00017
KEGG koko:K01081
KEGG ReactionR00183,R00511,R00963,R01126,R01227,R01569,R01664,R01968,R02088,R02102,R02323,R02719,R03346
KEGG Pathwayko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110
EggNOG free text desc.Belongs to the pyrimidine 5'-nucleotidase family
EggNOG OGsKOG3128@1,KOG3128@2759
EC3.1.3.5
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionHAD-like domain
Ec32 orthologEc-15_000820.1
Exons1
Model size153
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931107.4722447-CDS-H-elongata_contig70875:434..5871622931107.4722447-CDS-H-elongata_contig70875:434..587Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70875 435..587 -
1691679701.1739953-CDS-H-elongata_contig70875:434..5871691679701.1739953-CDS-H-elongata_contig70875:434..587Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70875 435..587 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70875.14746.1prot_H-elongata_contig70875.14746.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70875 435..587 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70875.14746.1

>prot_H-elongata_contig70875.14746.1 ID=prot_H-elongata_contig70875.14746.1|Name=mRNA_H-elongata_contig70875.14746.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
VLSDFDRTLTKFWVNGRMGYSCHTVIGSSELLSEEYRTKTAGLRNRFYPM
E
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mRNA from alignment at H-elongata_contig70875:435..587-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70875.14746.1 ID=mRNA_H-elongata_contig70875.14746.1|Name=mRNA_H-elongata_contig70875.14746.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=153bp|location=Sequence derived from alignment at H-elongata_contig70875:435..587- (Himanthalia elongata Himel1 dioecious)
GTGTTGTCAGACTTCGACCGCACCCTGACGAAGTTCTGGGTGAACGGACG GATGGGATACTCCTGCCACACGGTGATCGGGTCCTCCGAATTGCTCTCCG AGGAGTACCGAACGAAGACAGCGGGGCTGAGGAACCGTTTCTACCCCATG GAG
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Coding sequence (CDS) from alignment at H-elongata_contig70875:435..587-

>mRNA_H-elongata_contig70875.14746.1 ID=mRNA_H-elongata_contig70875.14746.1|Name=mRNA_H-elongata_contig70875.14746.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig70875:435..587- (Himanthalia elongata Himel1 dioecious)
GTGTTGTCAGACTTCGACCGCACCCTGACGAAGTTCTGGGTGAACGGACG
GATGGGATACTCCTGCCACACGGTGATCGGGTCCTCCGAATTGCTCTCCG
AGGAGTACCGAACGAAGACAGCGGGGCTGAGGAACCGTTTCTACCCCATG
GAGGTGTTGTCAGACTTCGACCGCACCCTGACGAAGTTCTGGGTGAACGG
ACGGATGGGATACTCCTGCCACACGGTGATCGGGTCCTCCGAATTGCTCT
CCGAGGAGTACCGAACGAAGACAGCGGGGCTGAGGAACCGTTTCTACCCC
ATGGAG
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