mRNA_H-elongata_contig7086.14745.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig7086.14745.1 vs. uniprot
Match: D7FVE2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVE2_ECTSI) HSP 1 Score: 597 bits (1540), Expect = 6.550e-189 Identity = 515/1191 (43.24%), Postives = 664/1191 (55.75%), Query Frame = 1
Query: 1 MMASLGEAEVARRIKHATEQELERRQRWREERSQRIKRDRSIVIIQAIWRKRRALAAFAPTRKACRREAVERRFMFEEENITEIIVALEAERKEVEKRHISQELCMMRYVRSEEKMTRRAWVYLLWLEKTAMQEELARMRAEERSTRALVELELEAVRHSNAIRREKEEXXXXXXXXXXXXXXXXXXKAEIIERDAMGLEDVLSNNREGMERRQQAIAKVEVSQMMTENISNLTLSIGYHSARERIRRTVLAKSTPIQRAMDHRGVIAARRLLLDNTTCFGHNVAKGGHDEATSISSAHAERSDARSLLILERARRRELYRSHLDNILAKSRESWHVHDSNIPTEALRGEID-HGIQGNTSYLATGGVGVRQSHFSASSPRTSSAENNDTEYVLTADMLSHLEPLQTLASLELCVEGLTSTRLLKACTSLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKELPEGFASGLMSPLPSSGLQTLKSIQQRSSSAAQSTLPHCALQKLELYHNRIAFIRPRALDGLGSLTHLDLGRNKLRSLDGRVMETCPALSTLVLSQNYLRKPPCSLRLPLLTEFWLSGNQISTMGEWVVGP--------PESFT----------------FPYLM------SHLEERLECSKMKQGKNNEPLFLKG--------GKHEAKGFVWLPSLVVLHLEDNVLESLGGRWSLAGCPLLRSLDISFNRLSSPADFGPCLSACGELEEIRLHDNPVVESGMCTNIVALNCSKVVRIDGVSVDRQA-HWRAGAKAYSRRSDLVFPYLDQSAQECDFRVDGGNAGALSPNDQQTVANNTSHIPVESI----EECLWCGATKPSVTKSMERDVRCSQEGDNYVNTSRTNSIPRG-EGDKDECNQVAPPQ--MEAYQATVKTVSHARQK--DACGACGLVPPDANMWRSASDTPDDKPALEWSGVLSAGHRWRYNFPTDLKTIGSSVDANDEETKRANLFQEACRWGYNERAQMRRRHRREERNLKS---VTSEKDNTPLGSPSRPHLDSGVTRPANHRAVTTLQSAFRGFHVRRVLKAALDSARYVDDELEGLLNVNGGARFELDRFLSPPPELAESWMDSGTAIQCFDEGNSSR------RVRAPNGLFVAAARAVINNTPR 3399
M+AS+GEA VARRI+ + LE +++ R++ + KR R V+ QAIWR R A AP + R+A E R MF+EE + E +VALEAER+E+E +H EL MRY EK TR +W +L LE+TA EEL RMRAEER TRAL+++E++ +R + +RE+EE KA+I+ER M ED+L+ + + ++ A ++ E +M E+ ++ T + + RE R A+STPIQRA D RGV AAR L+ + T +E D R++L++E+ARRRE + HLD I A + + T+ L + HG + + G V + S R AE + E LT+DMLSHL PL+ L +LELCVEGLTS LL+ACTSLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+ELPEGFA+GLM P QT + + + + LQKLELYHNR+A I PRAL GL SLTHL N LR+PP L LPLL E WLSGNQI +MG W P PE +T P + HL+ ++ +G+ E + K G+ VWLPSL VLHL+DN LE+LGGR+SLAGCPLLRS D SFN+L +P + L AC LEE+RLHDNP + + L+C + ++DGV +D Q HWRAGA AY RR+DLV P+L ++ + + R G A + +T N+ S + C WCG V + + E + VN + I RG +G +DE + + P Q V R C +CG P A++W S S++ + + W V SAG RWR F D++ ++ EE + F++AC G ER +MRRRHRREERN+ + V E+ + S D G T PAN +AVT LQSAFRGFHVRR L+AALDSA+YVDDELEGLLN+NGG RFELDRFLSPPPEL + W+ GT N R R +A + + ARA ++NTPR
Sbjct: 1 MVASVGEAAVARRIEREMARSLEAKRKRRDDNIREDKRARCAVVFQAIWRGRCMRALVAPALASRPRQAEETRRMFQEERLAERVVALEAERRELELKHQYTELDAMRYA---EKRTRASWAFLRHLEETARGEELVRMRAEERFTRALMDVEIQDLRRAQIAQREEEESSRMHAEDLAMRELKLAEKAQILERVVMQAEDMLARGLKNFKEQELASSRAEGYRMAAEDSASATWNAEFRRQREACLREAWARSTPIQRAADPRGVAAARALVCADGV-------------RTPSKPEPSELLDERTILMMEQARRREYCKRHLDRISASALRVRKDRQAAAHTKGLGRTLSGHGNKSGARGGSQGEVSFEEDLVSPKKDRAGPAERDGAECQLTSDMLSHLGPLEDLTALELCVEGLTSASLLQACTSLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRELPEGFAAGLMQPTDPIPAQT-----ETCPTVVERAVACGGLQKLELYHNRLASINPRALQGLASLTHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLLREPPSPLCLPLLNELWLSGNQIRSMGSWASSPTETRLDSLPERWTKHRAILEGALLELSGDSPQQLRASPGDQHLKHTPFLGRVSEGQGRESEYGKQETSTRGEHGRTYDDATVWLPSLEVLHLQDNALETLGGRFSLAGCPLLRSFDASFNQLRAPDEISLSLEACSGLEEVRLHDNPASACPNYADAITLSCPHLTQMDGVHLDAQVQHWRAGANAYGRRADLVLPFLLETGETSEARR-GAAAATPTTARNETTGNDVSESKASKEASVGDYCPWCG-----VCTLRAKHANDTVEESDAVNVAEV--IVRGRDGARDEASGLDPASGTTNLPQHIPGCVEGGRSSGPSTCVSCGFELPSADLW-SVSESRAARSFVSWQDVCSAGGRWRDGFCADVR---DTIGMGQEEMSERDSFRKACLQGRVEREKMRRRHRREERNVATGAGVNEERTAQLVASSPSVRQDVGTTWPANEKAVTKLQSAFRGFHVRRALQAALDSAKYVDDELEGLLNINGGDRFELDRFLSPPPELGDGWL--GTTAVAQGNKNIPRHLTPPSRAKATSIRAIDTARAAVSNTPR 1156
BLAST of mRNA_H-elongata_contig7086.14745.1 vs. uniprot
Match: A0A6H5JF94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF94_9PHAE) HSP 1 Score: 538 bits (1385), Expect = 5.550e-165 Identity = 519/1359 (38.19%), Postives = 682/1359 (50.18%), Query Frame = 1
Query: 1 MMASLGEAEVARRIKHATEQELERRQRWREERSQRIKRDRSIVIIQAIWRKRRALAAFAPTRKACRREAVERRFMFEEENITEIIVALEAERKEVEKRHISQELCMMRYVRSEEKMTRRAWVYLLWLEKTAMQEELARMRAEERSTRALVELELEAVRHSNAIRREKEEXXXXXXXXXXXXXXXXXXKAEIIERDAMGLEDVLSNNREGMERRQQAIAKVEVSQMMTENISNLTLSIGYHSARERIRRTVLAKSTPIQRAMDHRGVIAARRLLLDNTTCFGHNVAKGGHDEATSISSAH-AERSDARSLLILERARRRELYRSHLDNILAKSRESWHVHDSNIPTEAL-RGEIDHGIQGNTSYLATGGVGVRQSHFSASSPRTSSAENNDTEYVLTADMLSHLEPLQTLASLELCVEGLTSTRLLKACTSLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKELPEGFASGLMSPLPSSGLQTLKSIQQRSSSAAQSTLPHCALQKLELYHNRIAFIRPRALDGLGSLTHLDLGRNKLRSLDGRVMETCPALSTLVLSQNYLRKPPCSLRLPLLTEFWLSGNQISTMGEWVVGPPESF--TFPYLMS----------------------------HLEERLECSKMKQGKNNEPLF------LKG--GKHEAKGFVWLPSLVVLHLEDNVLESLGGRWSLAGCPLLRSLDISFNRLSSPADFGPCLSACGELEEIRLHDNPVVESGMCTNIVALNCSKV-------------------------------------------------VRIDGVSVDRQAHWRAGAKAYSRRSDLVFPYLDQSAQECDFRVDGGNAGALSPNDQQTVANNTSH---IPVESIEECL-WCGATKPSVTKSMERDVRCSQEGDNYVNTSRTNSIPRG-EGDKDECNQVAPPQ--MEAYQATVKTVSHARQK--DACGACGLVPPDANMWRSASDTPDDKPALEWSGVLSAGHRWRYNFPTDLKTIGSSVDANDEETKRANLFQEACRWGYNERAQMRRRHRREERNLKS-----------------VTS------------------------------------------------------------------EKDNTPLG-----------SPSRPHL-----------------------------DSGVTRPANHRAVTTLQSAFRGFHVRRVLKAALDSARYVDDELEGLLNVNGGARFELDRFLSPPPELAESWMDSGTAIQCFDEGNSSR------RVRAPNGLFVAAARAVINNTP 3396
++A +GEA VARRI+ + LE +++ R++ + KR R V+ QAIWR A AP + RREA E + MF+EE + E +VALE ER+E+E + EL MRY EK TR +W + LE+TA EEL RMRAEER TRALV++E++ +R + ++RE+EE KA+++ER M ED+L+ + + ++ A ++ E +M E+ ++ T + + RE R A+STPIQRA+D RG AAR L+ D ++S +E D R +L++E+ARRRE + HL I A + + + T+ L R + HG + + G V ++ ++ R AE + E LT+DMLSHL PL+ L +LELCVEGLTS LL+ACTSLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+ELPEGFA GLMSP QT + + + + LQKLELYHNR+A I PRAL GL SLTHLD LSQN LR+PP L LPLL E WLSGNQI +MG W P E+ + P + HL+ ++ +G+ E + L+G G+ VWLPSL VLH++DN LE+LGGR+SLAGCPLLRS D SFN+L +P + L AC LEE+RLHDNP + +AL+C V +R+DGV +D Q HWRAGA Y RR+DLV P+L ++ + + G A + +T N+ + + S+ +C WCG V + + E + VN +R I RG +G +DE + + P Q + R C +CG P A++W S S++ + + W GV SAG RWR F ++ + EE +N F++AC G ER +MRRRHRREERN+ + +TS + +++ LG S SR H D G T PAN +AVT LQSAFRGFHVRR L+AALDSA+YVDDELEGLLN+NGG RFELDRFLSPPPEL + W+ GT + N R R +A + V ARAV++N P
Sbjct: 11 VVAFVGEAAVARRIEREMARSLEAKRKRRDDNIREDKRARCAVVFQAIWRGHCMRALVAPALASRRREAEEIQRMFQEERLAECVVALEEERREIELKRQCNELDAMRYA---EKRTRTSWAFFRHLEETARGEELVRMRAEERLTRALVDVEIQDLRRAQIVQREEEELGRMCAEDLAMRELKLAEKAQMLERVVMQAEDILARGLKNFDEQELASSRAEGCRMAAEDSASATWNAEFRRQRETCLREAWARSTPIQRAVDPRGAAAARALVCT--------------DGVRALSKPEPSELLDERMMLMIEQARRREYCKMHLYRISANALRVRKNRQAAVHTKGLGRTLLGHGNKSGARGGSQGEVSFEENLVASKKDRAGPAERDGAECKLTSDMLSHLGPLEDLTALELCVEGLTSASLLQACTSLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRELPEGFAVGLMSPTDPIPAQT-----ETCPTVVERAVACGGLQKLELYHNRLASIHPRALQGLASLTHLDXXXXXXXXXXXXXXXXXXXXXXXXLSQNLLREPPSPLCLPLLNELWLSGNQIRSMGSWASSPKETRLRSLPERWAKHRAILEGALLELSGDSAEQLRASPGDQHLKHTPFLGRVSEGQGRESEYGKQETSLRGEHGRTCDDATVWLPSLEVLHMQDNALETLGGRFSLAGCPLLRSFDASFNQLRAPDEIALSLEACSGLEEVRLHDNPASACPNYADAIALSCPHVSTSTGIDTPLCTCHRGVYVWDWRGHLYQVRCHCDALFVSYVAFQSLFQLMRMDGVHLDAQVHWRAGANTYGRRADLVLPFLLETGETSEA-PHGAAAATPTTARSETTGNDVNESKALKEASVGDCCPWCG-----VCTLRAKHANNTVEESDAVNVARV--IARGRDGKRDEASGLDPASGTTNLPQHIPDCIEGGRSSGPSICVSCGFELPSADLW-SVSESRAARSFVSWQGVCSAGGRWRDGFCAGVR---DKIGIGQEEMSESNSFRKACLRGRVEREKMRRRHRREERNVATGADFNEVGPRTVKGGGDITSRLAPRASSKRRLEVELELGEHHAEERRRQAATQLCSHSGRVDHGGVGASDRACVVLDCASIQPGEDQCNHSYLGTDAFRISPCQASSSRRHTRAARTIQRLWHRRQERTAQLVSSSPSVRQDVGTTWPANEQAVTKLQSAFRGFHVRRALQAALDSAKYVDDELEGLLNINGGDRFELDRFLSPPPELGDGWL--GTNVVAQGNKNIPRHPTPPSRAKATSIRLVDTARAVVSNAP 1333
BLAST of mRNA_H-elongata_contig7086.14745.1 vs. uniprot
Match: A0A835Z7U6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7U6_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 1.280e-6 Identity = 32/60 (53.33%), Postives = 41/60 (68.33%), Query Frame = 1
Query: 3103 AVTTLQSAFRGFHVRRVLKAALDSARYVDDELEGLLNVNGGARFELDRFLSPPPELAESW 3282
A LQ AFRGFHVRR L+AAL+SARYVD ELEG++ + ++D FL P +L + W
Sbjct: 1569 AAVKLQRAFRGFHVRRALQAALESARYVDHELEGMVGL------DVDAFLGTPMQLDDDW 1622
BLAST of mRNA_H-elongata_contig7086.14745.1 vs. uniprot
Match: A0A7S2S535_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S535_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 2.290e-6 Identity = 25/44 (56.82%), Postives = 35/44 (79.55%), Query Frame = 1
Query: 1639 ALQKLELYHNRIAFIRPRALDGLGSLTHLDLGRNKLRSLDGRVM 1770
ALQ+L+LYHN+++F+ AL GL SLTHLDLGRN+L+ + G +
Sbjct: 57 ALQRLDLYHNKLSFLPTSALQGLPSLTHLDLGRNQLQHVSGETL 100 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7086.14745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig7086.14745.1 >prot_H-elongata_contig7086.14745.1 ID=prot_H-elongata_contig7086.14745.1|Name=mRNA_H-elongata_contig7086.14745.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=1133bp MMASLGEAEVARRIKHATEQELERRQRWREERSQRIKRDRSIVIIQAIWRback to top mRNA from alignment at H-elongata_contig7086:2897..8328+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig7086.14745.1 ID=mRNA_H-elongata_contig7086.14745.1|Name=mRNA_H-elongata_contig7086.14745.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5432bp|location=Sequence derived from alignment at H-elongata_contig7086:2897..8328+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig7086:2897..8328+ >mRNA_H-elongata_contig7086.14745.1 ID=mRNA_H-elongata_contig7086.14745.1|Name=mRNA_H-elongata_contig7086.14745.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=6798bp|location=Sequence derived from alignment at H-elongata_contig7086:2897..8328+ (Himanthalia elongata Himel1 dioecious)back to top |