mRNA_H-elongata_contig70814.14742.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70814.14742.1
Unique NamemRNA_H-elongata_contig70814.14742.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig70814.14742.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 357 bits (915), Expect = 5.090e-118
Identity = 202/282 (71.63%), Postives = 233/282 (82.62%), Query Frame = 2
Query:    2 LNSVTMWALGVNGSAKTCENPAMEKLMKRLAAVVGVYSHSAVNNDELKSIQQLQEEFHKIYELIRRNDTRWTTQHDMMVRLLQLKKAIMEYFRKHESNNRKLTAREWTVTNEVCSLLDVVAEVRIKIQGAVNTHISQIMFNMREIKNIFAEEEFSIRVPDQLYRGGNVQKERMTLEDLSMKAVDVRNTILSRLDKKGLGKANMALERICALLDPRRKESSKDHPINGSPALHIAAIEDVKMVAKTFVEATAGSASSXXXXXXXXXXXXXGEPTQPEPKRQKV 847
            LNSVTMWALG+NGS +T ENPAMEKLMKRLAAVVGV+SHSAVNNDELK IQ+LQEEF  IYELIRRNDTRW +QH MMVRLL+LKKAI+EYFR +E+NNRKL++REWTVTNEVCSLLDVVAEV +KIQGA +THISQ MFNMREI+ IF+ + + IRVPDQ Y   +V KE++ ++DL  +   VR  +LSR++KK LG A M LERICALLDPRRK+ S +H +NGS  L  +AI DVK VAKTF EA  GSASSXXXXXXXXXXXXX    QP PK+QKV
Sbjct:   52 LNSVTMWALGINGSIRTGENPAMEKLMKRLAAVVGVFSHSAVNNDELKDIQRLQEEFQIIYELIRRNDTRWASQHAMMVRLLKLKKAIVEYFRDNENNNRKLSSREWTVTNEVCSLLDVVAEVTVKIQGATDTHISQTMFNMREIREIFSGDVYKIRVPDQPYNDDSVLKEKIQVDDLMTETCKVREVVLSRMEKKELGAARMPLERICALLDPRRKDCSDEHLVNGSADLKASAIADVKSVAKTFAEADLGSASSXXXXXXXXXXXXXN---QPAPKKQKV 330          
BLAST of mRNA_H-elongata_contig70814.14742.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 357 bits (915), Expect = 3.280e-114
Identity = 202/282 (71.63%), Postives = 233/282 (82.62%), Query Frame = 2
Query:    2 LNSVTMWALGVNGSAKTCENPAMEKLMKRLAAVVGVYSHSAVNNDELKSIQQLQEEFHKIYELIRRNDTRWTTQHDMMVRLLQLKKAIMEYFRKHESNNRKLTAREWTVTNEVCSLLDVVAEVRIKIQGAVNTHISQIMFNMREIKNIFAEEEFSIRVPDQLYRGGNVQKERMTLEDLSMKAVDVRNTILSRLDKKGLGKANMALERICALLDPRRKESSKDHPINGSPALHIAAIEDVKMVAKTFVEATAGSASSXXXXXXXXXXXXXGEPTQPEPKRQKV 847
            LNSVTMWALG+NGS +T ENPAMEKLMKRLAAVVGV+SHSAVNNDELK IQ+LQEEF  IYELIRRNDTRW +QH MMVRLL+LKKAI+EYFR +E+NNRKL++REWTVTNEVCSLLDVVAEV +KIQGA +THISQ MFNMREI+ IF+ + + IRVPDQ Y   +V KE++ ++DL  +   VR  +LSR++KK LG A M LERICALLDPRRK+ S +H +NGS  L  +AI DVK VAKTF EA  GSASSXXXXXXXXXXXXX    QP PK+QKV
Sbjct:  380 LNSVTMWALGINGSIRTGENPAMEKLMKRLAAVVGVFSHSAVNNDELKDIQRLQEEFQIIYELIRRNDTRWASQHAMMVRLLKLKKAIVEYFRDNENNNRKLSSREWTVTNEVCSLLDVVAEVTVKIQGATDTHISQTMFNMREIREIFSGDVYKIRVPDQPYNDDSVLKEKIQVDDLMTETCKVREVVLSRMEKKELGAARMPLERICALLDPRRKDCSDEHLVNGSADLKASAIADVKSVAKTFAEADLGSASSXXXXXXXXXXXXXN---QPAPKKQKV 658          
BLAST of mRNA_H-elongata_contig70814.14742.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 228 bits (581), Expect = 2.440e-65
Identity = 128/285 (44.91%), Postives = 179/285 (62.81%), Query Frame = 2
Query:    2 LNSVTMWALGVNGSAKTCENPAMEKLMKRLAAVVGVYSHSAVNNDELKSIQQLQEEFHKIYELIRRNDTRWTTQHDMMVRLLQLKKAIMEYFRKHESNNRKLTAREWTVTNEVCSLLDVVAEVRIKIQGAVNTHISQIMFNMREIKNIFAEEEFSIRVPDQLYRG---GNVQKERMTLEDLSMKAVDVRNTILSRLDKKGLGKANMALERICALLDPRRKESSKDHPINGSPALHIAAIEDVKMVAKTFVEATAGSASSXXXXXXXXXXXXXGEPTQPEPKRQKV 847
            LN+  +WALG+ G  +   NPAM  LMK+LAA+VGV+SHSAVNNDELK +Q+L+E F +IYEL+RRNDTRWT+Q  MM R+L LKK I EYF+K+  N RKLT  EWT+TNEVCSLL  V+EV I++QG+V+TH+ Q MF + E+  +  E+   IR P+          +  +   + DL+ +A  V   +  ++ +KG+G A +A+ER+ AL+DPRRK    D   NGS  L   A +D+K V   F    A +A +              +P +P PK++K+
Sbjct:  392 LNTAVVWALGIAGKGRL--NPAMGTLMKKLAAMVGVFSHSAVNNDELKELQRLEEGFSRIYELLRRNDTRWTSQFKMMDRVLALKKPISEYFKKYPQNERKLTPNEWTITNEVCSLLSDVSEVTIRMQGSVDTHVGQAMFILHELIEMLGEDTHPIRQPNATVMPLPPEGIPTDDTQVMDLTAEAQCVLEVLQEKMREKGMGSAQVAVERLSALMDPRRKSLDSDQLENGSADLRKKAEDDLKAVIAKFDVGPATAAPAPAPVMNL-------DPVEPAPKKKKL 667          
BLAST of mRNA_H-elongata_contig70814.14742.1 vs. uniprot
Match: A0A6H5KAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS2_9PHAE)

HSP 1 Score: 215 bits (547), Expect = 1.460e-63
Identity = 135/286 (47.20%), Postives = 183/286 (63.99%), Query Frame = 2
Query:    2 LNSVTMWALGVNGSAKTCENPAMEKLMKRLAAVVGVYSHSAVNNDELKSIQQLQEEFHKIYELIRRNDTRW-TTQHDMMVRLLQLKKAIMEYFRKHESNNRKLTAREWTVTNEVCSLLDVVAEVRIKIQGAVNTHISQIMFNMREIKNIFAEEEFSIRVPDQLY---RGGNVQKERMTLEDLSMKAVDVRNTILSRLDKKGLGKANMALERICALLDPRRKESSKDHPINGSPALHIAAIEDVKMVAKTFVEATAGSASSXXXXXXXXXXXXXGEPTQPEPKRQKV 847
            +N+  +WALG+  +AK  +NP M  LMK+LAA+VGV+SHSAVNNDELK +Q+L+E F +IYEL+RRNDTRW T+Q  MM R L LKK I E+F+K+  N+RKLT  EWT+ NEVCSLL  V+E+ I++QG+V+THI Q MF + E+  +  E+   IR P+          +  +   + DL+ +A  V   +L  + KKG+G A +A ER+ AL+DPRRK    D   NGS  L   A +D+K V   F     G ++      XXXXXXXX  P +P PKR+ V
Sbjct:   41 VNTAVVWALGI--AAKGRKNPTMGTLMKKLAAMVGVFSHSAVNNDELKELQRLEEGFSRIYELLRRNDTRWWTSQLKMMDRALALKKPISEFFKKYPQNDRKLTPNEWTIINEVCSLLADVSEITIRVQGSVDTHIGQAMFIIHEVIEMLGEDTHPIRQPNATVVPVPEEGIPTDDTPVTDLTAEAPCVLEVLLDVMRKKGVGSAQVAAERLSALMDPRRKLLGSDQLENGSADLSKKAEDDLKAVIAKF---DVGPSTESTAAPXXXXXXXXXXPAEPAPKRKTV 321          
BLAST of mRNA_H-elongata_contig70814.14742.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 1.160e-62
Identity = 124/285 (43.51%), Postives = 176/285 (61.75%), Query Frame = 2
Query:    2 LNSVTMWALGVNGSAKTCENPAMEKLMKRLAAVVGVYSHSAVNNDELKSIQQLQEEFHKIYELIRRNDTRWTTQHDMMVRLLQLKKAIMEYFRKHESNNRKLTAREWTVTNEVCSLLDVVAEVRIKIQGAVNTHISQIMFNMREIKNIFAEEEFSIRVPDQLYRG---GNVQKERMTLEDLSMKAVDVRNTILSRLDKKGLGKANMALERICALLDPRRKESSKDHPINGSPALHIAAIEDVKMVAKTFVEATAGSASSXXXXXXXXXXXXXGEPTQPEPKRQKV 847
            LN+  +WALG+ G  +   NPAM  LMK+LAA+VGV+SHSAVNNDELK +Q+L+E F +IYEL+R NDTRWT+Q  MM R+L LKK I EYF+K+  N RKLT  EWT+TNEVCSLL  V+EV I++QG+V+TH+ Q MF + E+  +  E+   IR P+          +  +   + DL+ +A  V   +  ++ +KG+G A +A+ER+ AL+DPR +    D   NGS  L   A +D+K V   F    A +A +              +  +P PK++K+
Sbjct:  197 LNTAVVWALGIAGKGRL--NPAMGTLMKKLAAMVGVFSHSAVNNDELKELQRLEEGFSRIYELLRPNDTRWTSQFKMMDRVLALKKPISEYFKKYPQNERKLTPNEWTITNEVCSLLSDVSEVTIRMQGSVDTHVGQAMFILHELIEMLGEDTHPIRQPNATVMPLPPEGIPTDDTQVMDLTAEAQCVLEVLQEKMREKGVGSAQVAVERLSALMDPRLRSLDSDQLENGSADLRKKAEDDLKAVIAKFDVGPATAAPAPAPVMNL-------DRVEPAPKKKKL 472          
BLAST of mRNA_H-elongata_contig70814.14742.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 216 bits (551), Expect = 3.900e-61
Identity = 120/246 (48.78%), Postives = 161/246 (65.45%), Query Frame = 2
Query:    2 LNSVTMWALGVNGSAKTCENPAMEKLMKRLAAVVGVYSHSAVNNDELKSIQQLQEEFHKIYELIRRNDTRWTTQHDMMVRLLQLKKAIMEYFRKHESNNRKLTAREWTVTNEVCSLLDVVAEVRIKIQGAVNTHISQIMFNMREIKNIFAEEEFSIRVPDQLYRGGNVQKERMTLEDLSMKAVDVRNTILSRLDKKGLGKANMALERICALLDPRRKESSKDHPINGSPALHIAAIEDVKMVAKTF 739
            +N+  +WALG+ G+ +   N  M  LMK+LAA+VGV+SHSAVNND+LK +Q+L+E+ H +Y+LIRRNDTRWT+Q  MM RLL LKK I EYFR+   N+RKLT  EWT+TNEVCSLL  V+EV I++QGA +THISQ MF + E+  +  E+   IR  +        + E M + +LS  A  V   +L  +++K +GKA   +ER+ AL+DPRRK        NGS  L   A ED+K V   F
Sbjct:  390 VNTAVLWALGIAGNGR--RNKVMGDLMKKLAALVGVFSHSAVNNDKLKELQRLEEDLHAVYQLIRRNDTRWTSQFKMMDRLLALKKPITEYFREQPHNSRKLTQPEWTITNEVCSLLSDVSEVTIRMQGAKDTHISQAMFIIHEVMEMLREDSHPIRAQNA------TEPEEMQVLELSSAAQGVLEVLLDVMEEKQVGKAVQQVERLSALMDPRRKSLDGAKLENGSATLRKKAEEDLKAVIAQF 627          
BLAST of mRNA_H-elongata_contig70814.14742.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE)

HSP 1 Score: 212 bits (540), Expect = 1.100e-60
Identity = 127/280 (45.36%), Postives = 167/280 (59.64%), Query Frame = 2
Query:    2 LNSVTMWALGVNGSAKTCENPAMEKLMKRLAAVVGVYSHSAVNNDELKSIQQLQEEFHKIYELIRRNDTRWTTQHDMMVRLLQLKKAIMEYFRKHESNN-------RKLTAREWTVTNEVCSLLDVVAEVRIKIQGAVNTHISQIMFNMREIKNIFAEEEFSIRVPDQLY--------------RGGN------VQKERMTLEDLSMKAVDVRNTILSRLDKKGLGKANMALERICALLDPRRKESSKDHPINGSPALHIAAIEDVKMVAKTFVEATAGS 760
            +NS  +WALG+ GS  TC+N    K MK+LAA+VGV+SHSAVNND LK +Q+L+ + H+IYE IRRNDTRWT+Q  MM RLL LKK I EYFR+    N       RKLTA EWTVTNEVCSLL+ V+EV I++QGA +TH+SQ  F + E+ ++   +   IRV   +                G N      +      + DL+++A DV   +L  +D+KG+GKA   +ER+  LLDPRRK     H  NGS  L   A  D+K     F + +A S
Sbjct:  201 VNSAVLWALGIAGSVTTCKN----KPMKKLAALVGVFSHSAVNNDMLKELQRLEADLHRIYETIRRNDTRWTSQQKMMGRLLILKKPISEYFRRLAQQNSQNKQLKRKLTAHEWTVTNEVCSLLETVSEVTIRMQGATDTHLSQATFIINEVIDMLTTDYHPIRVESAIVTPPPPAAGIIPTEGEGQNESSLDGISTAETQVTDLTLEAQDVVQVLLEVMDEKGVGKALQWVERLSVLLDPRRKTLDDTHLRNGSSDLKTQAEADLKAFIGKFAQESAPS 476          
BLAST of mRNA_H-elongata_contig70814.14742.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 211 bits (536), Expect = 4.470e-60
Identity = 124/260 (47.69%), Postives = 161/260 (61.92%), Query Frame = 2
Query:    2 LNSVTMWALGVNGSAKTCENPAMEKLMKRLAAVVGVYSHSAVNNDELKSIQQLQEEFHKIYELIRRNDTRWTTQHDMMVRLLQLKKAIMEYFRKHESNN-------RKLTAREWTVTNEVCSLLDVVAEVRIKIQGAVNTHISQIMFNMREIKNIFAEEEFSIRVPDQLYRGGNVQKERMTLEDLSMKAVDVRNTILSRLDKKGLGKANMALERICALLDPRRKESSKDHPINGSPALHIAAIEDVKMVAKTFVEATAGS 760
            +NS  +WALG+ GSA TC+N    K MK+LAA+VGV+SHSAVNND LK +Q+L+ + H+IYE IRRNDTRWT+Q  MM RLL LKK I EYFR+    N       RKLTA EWTVTNEVCSLL+ V+EV I++QGA  TH+SQ  F + E +    + E S+           +  E   +  L+++A DV   +   +D+KG+GKA   +ER+  LLDPRRK     H  NGS  L   A  D+K     F + +A S
Sbjct:  201 VNSAVLWALGIAGSATTCKN----KPMKKLAALVGVFSHSAVNNDMLKELQRLEADLHRIYETIRRNDTRWTSQQKMMGRLLILKKPISEYFRRLAQQNSQNKQLKRKLTAHEWTVTNEVCSLLETVSEVTIRMQGATETHLSQATFIINEGEG---QNESSL---------DGISTEETQVTGLTLEAQDVVQVLREMMDEKGVGKALQRVERLSVLLDPRRKTLDDTHLRNGSSDLKTQAEADLKAFTGKFAQESAPS 444          
BLAST of mRNA_H-elongata_contig70814.14742.1 vs. uniprot
Match: A0A6H5KZZ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZZ1_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 1.710e-57
Identity = 117/268 (43.66%), Postives = 161/268 (60.07%), Query Frame = 2
Query:   68 MEKLMKRLAAVVGVYSHSAVNNDELKSIQQLQEEFHKIYELIRRNDTRWTTQHDMMVRLLQLKKAIMEYFRKHESNNRKLTAREWTVTNEVCSLLDVVAEVRIKIQGAVNTHISQIMFNMREIKNIFAEEEFSIRVPDQLY---RGGNVQKERMTLEDLSMKAVDVRNTILSRLDKKGLGKANMALERICALLDPRRKESSKDHPINGSPALHIAAIEDVKMVAKTF-----VEATAGSASSXXXXXXXXXXXXXGEPTQPEPKRQKV 847
            M  LMK+LAA+VGV++HSAVNNDELK +Q+L+E F +IYEL+RRNDTRWT+Q  MM R L LKK I EYF+K+  N RKLT  EWT+ NEVCSLL  V+EV I++QG+V+THI Q MF + E+  +  E+   IR P+          +  +   + DL+ +A  V   +L  + +KG+G A +A+E + AL+DP  K    D   NGS  L   A +D+K V   F      E+T   A +              +P +P PK++KV
Sbjct:    1 MGTLMKKLAAMVGVFNHSAVNNDELKELQRLEEGFSRIYELLRRNDTRWTSQFKMMDRCLALKKPISEYFKKYLQNERKLTPNEWTMINEVCSLLSNVSEVTIRMQGSVDTHIGQAMFIIHELIEMLGEDTHPIRQPNATVVPVPPEGIPTDGTQVTDLTAEAQCVLEVLLDVMREKGVGSAQVAVESLSALMDPSGKLLDSDQLENGSADLRNKAEDDLKAVIAKFDVGPSTESTVAPAPAPVVNT---------DPAEPAPKKKKV 259          
BLAST of mRNA_H-elongata_contig70814.14742.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 2.300e-57
Identity = 123/271 (45.39%), Postives = 165/271 (60.89%), Query Frame = 2
Query:    2 LNSVTMWALGVNGSAKTCENPAMEKLMKRLAAVVGVYSHSAVNNDELKSIQQLQEEFHKIYELIRRNDTRWTTQHDMMVRLLQLKKAIMEYFRK------HESNNRKLTAREWTVTNEVCSLLDVVAEVRIKIQGAVNTHISQIMFNMREIKNIFAEEEFSIRVPDQLY-------------------RGGNVQKERMTLEDLSMKAVDVRNTILSRLDKKGLGKANMALERICALLDPRRKESSKDHPINGSPALHIAAIEDVKMVAKTF 739
            +NS  +WALG+ GSA TC N  M  LMK+LAA+VGV+S SAVNN  LK +Q+L+ + H+IYEL+RRNDT   +Q  MM RLL LKK I EYFR+      ++   RKL++ EW VTNEVCSLL  V+E+ I+IQGA +THISQ MF + E+  +  +E   IR  + +                    + G V  E + +EDL+ +A  VR  +L  +++KG+GKA   +ER+ ALLDPRRK+       NG   L IAA  D+K    TF
Sbjct:   56 INSAVVWALGIAGSATTCRNTKMGGLMKKLAALVGVFSPSAVNN-MLKELQRLETDLHRIYELMRRNDT---SQFKMMGRLLTLKKPISEYFRRLPQIPSNKQLKRKLSSHEWIVTNEVCSLLGDVSEITIRIQGAQDTHISQAMFLIHEVMEMLKDETHPIRTANAIVTPPPPALDVIPTEEEENQPQKGGVSTEDIHVEDLTTEAQGVRKVLLEVMEEKGVGKALQRVERLSALLDPRRKDLDATQVGNGDEDLRIAAEADLKKFIATF 322          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70814.14742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5KAN7_9PHAE5.090e-11871.63Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE3.280e-11471.63Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE2.440e-6544.91Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5KAS2_9PHAE1.460e-6347.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTB8_9PHAE1.160e-6243.51Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JRT6_9PHAE3.900e-6148.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZU3_9PHAE1.100e-6045.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQI6_9PHAE4.470e-6047.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZZ1_9PHAE1.710e-5743.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDJ6_9PHAE2.300e-5745.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70814contigH-elongata_contig70814:95..1299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size848
Cds size831
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70814.14742.1prot_H-elongata_contig70814.14742.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70814 111..1299 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931106.9704607-UTR-H-elongata_contig70814:94..1101622931106.9704607-UTR-H-elongata_contig70814:94..110Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70814 95..110 +
1691679700.9854388-UTR-H-elongata_contig70814:94..1101691679700.9854388-UTR-H-elongata_contig70814:94..110Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70814 95..110 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931106.988444-CDS-H-elongata_contig70814:110..3041622931106.988444-CDS-H-elongata_contig70814:110..304Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70814 111..304 +
1691679700.995637-CDS-H-elongata_contig70814:110..3041691679700.995637-CDS-H-elongata_contig70814:110..304Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70814 111..304 +
1622931107.0067086-CDS-H-elongata_contig70814:662..12991622931107.0067086-CDS-H-elongata_contig70814:662..1299Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70814 663..1299 +
1691679701.0054333-CDS-H-elongata_contig70814:662..12991691679701.0054333-CDS-H-elongata_contig70814:662..1299Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70814 663..1299 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70814.14742.1

>prot_H-elongata_contig70814.14742.1 ID=prot_H-elongata_contig70814.14742.1|Name=mRNA_H-elongata_contig70814.14742.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=277bp
MWALGVNGSAKTCENPAMEKLMKRLAAVVGVYSHSAVNNDELKSIQQLQE
EFHKIYELIRRNDTRWTTQHDMMVRLLQLKKAIMEYFRKHESNNRKLTAR
EWTVTNEVCSLLDVVAEVRIKIQGAVNTHISQIMFNMREIKNIFAEEEFS
IRVPDQLYRGGNVQKERMTLEDLSMKAVDVRNTILSRLDKKGLGKANMAL
ERICALLDPRRKESSKDHPINGSPALHIAAIEDVKMVAKTFVEATAGSAS
STAGGASGCGGSGGGEPTQPEPKRQKV
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mRNA from alignment at H-elongata_contig70814:95..1299+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70814.14742.1 ID=mRNA_H-elongata_contig70814.14742.1|Name=mRNA_H-elongata_contig70814.14742.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1205bp|location=Sequence derived from alignment at H-elongata_contig70814:95..1299+ (Himanthalia elongata Himel1 dioecious)
CCTCAACTCCGTAACCATGTGGGCGTTGGGGGTAAATGGTTCCGCCAAGA CGTGCGAAAATCCAGCCATGGAAAAGCTGATGAAGAGGCTGGCGGCGGTG GTTGGGGTGTACAGCCATTCCGCGGTCAACAACGACGAGTTGAAGAGCAT CCAGCAACTACAAGAGGAGTTCCACAAGATCTACGAGCTGATCAGGCGCA ACGACACGAGGTGATTGGCGAGTTCTTTGTTATGTTAAATTTTGAATTTT GAATTTTCGACTTTCCGTAGTACACGTTTGCACGCCTTGTCCATACCGCC TTTGGATACATATCAAGCATTGGTGTAGGAGTGCCATACATCTCGATTGC TAATTCCGATAATAATTCAATATGATGTTGACTGCACCATGATTATTGTT TCAGTGTTGAACACCCAGATGCTTCACCGTCGTTCCAACGAAGCGCGCGC ATTGTCACGTCAACCTACTGTTTTACTTTTGGGCAAGTCCATCTTTGTCC GGAAACTGAACCACGCATCTCGTGATTAATGTGATACCATATTTATCGCT TTTCAATTCGACCGATAGGTGGACCACTCAACACGACATGATGGTCCGCC TACTCCAGCTGAAGAAGGCCATCATGGAGTACTTCAGAAAACACGAAAGC AACAACCGGAAGTTGACCGCTCGTGAGTGGACCGTCACCAATGAGGTGTG CAGCCTCCTGGACGTCGTTGCGGAGGTAAGGATCAAAATCCAAGGCGCCG TCAACACCCACATCAGCCAGATCATGTTTAACATGCGCGAGATCAAGAAC ATCTTCGCCGAGGAGGAATTTAGCATCCGCGTGCCAGACCAGCTTTACCG CGGCGGCAATGTGCAAAAGGAACGGATGACCTTGGAAGACCTTTCCATGA AGGCGGTGGATGTACGGAATACCATACTTTCGAGGTTAGACAAGAAAGGG CTTGGGAAGGCCAACATGGCCCTGGAGCGCATCTGTGCGCTGCTGGACCC GAGGCGGAAGGAGTCCTCAAAAGACCATCCCATCAACGGCAGCCCAGCTC TGCACATCGCTGCCATCGAGGATGTCAAAATGGTCGCGAAGACGTTCGTG GAGGCTACGGCCGGGTCTGCTTCCTCAACCGCTGGGGGTGCAAGTGGCTG CGGTGGCAGCGGTGGAGGCGAACCCACCCAGCCTGAGCCCAAGAGGCAGA AAGTC
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Coding sequence (CDS) from alignment at H-elongata_contig70814:95..1299+

>mRNA_H-elongata_contig70814.14742.1 ID=mRNA_H-elongata_contig70814.14742.1|Name=mRNA_H-elongata_contig70814.14742.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1662bp|location=Sequence derived from alignment at H-elongata_contig70814:95..1299+ (Himanthalia elongata Himel1 dioecious)
ATGTGGGCGTTGGGGGTAAATGGTTCCGCCAAGACGTGCGAAAATCCAGC
CATGGAAAAGCTGATGAAGAGGCTGGCGGCGGTGGTTGGGGTGTACAGCC
ATTCCGCGGTCAACAACGACGAGTTGAAGAGCATCCAGCAACTACAAGAG
GAGTTCCACAAGATCTACGAGCTGATCAGGCGCAACGACACGAGATGTGG
GCGTTGGGGGTAAATGGTTCCGCCAAGACGTGCGAAAATCCAGCCATGGA
AAAGCTGATGAAGAGGCTGGCGGCGGTGGTTGGGGTGTACAGCCATTCCG
CGGTCAACAACGACGAGTTGAAGAGCATCCAGCAACTACAAGAGGAGTTC
CACAAGATCTACGAGCTGATCAGGCGCAACGACACGAGGTGGACCACTCA
ACACGACATGATGGTCCGCCTACTCCAGCTGAAGAAGGCCATCATGGAGT
ACTTCAGAAAACACGAAAGCAACAACCGGAAGTTGACCGCTCGTGAGTGG
ACCGTCACCAATGAGGTGTGCAGCCTCCTGGACGTCGTTGCGGAGGTAAG
GATCAAAATCCAAGGCGCCGTCAACACCCACATCAGCCAGATCATGTTTA
ACATGCGCGAGATCAAGAACATCTTCGCCGAGGAGGAATTTAGCATCCGC
GTGCCAGACCAGCTTTACCGCGGCGGCAATGTGCAAAAGGAACGGATGAC
CTTGGAAGACCTTTCCATGAAGGCGGTGGATGTACGGAATACCATACTTT
CGAGGTTAGACAAGAAAGGGCTTGGGAAGGCCAACATGGCCCTGGAGCGC
ATCTGTGCGCTGCTGGACCCGAGGCGGAAGGAGTCCTCAAAAGACCATCC
CATCAACGGCAGCCCAGCTCTGCACATCGCTGCCATCGAGGATGTCAAAA
TGGTCGCGAAGACGTTCGTGGAGGCTACGGCCGGGTCTGCTTCCTCAACC
GCTGGGGGTGCAAGTGGCTGCGGTGGCAGCGGTGGAGGCGAACCCACCCA
GCCTGAGCCCAAGAGGCAGAAAGTCGTGGACCACTCAACACGACATGATG
GTCCGCCTACTCCAGCTGAAGAAGGCCATCATGGAGTACTTCAGAAAACA
CGAAAGCAACAACCGGAAGTTGACCGCTCGTGAGTGGACCGTCACCAATG
AGGTGTGCAGCCTCCTGGACGTCGTTGCGGAGGTAAGGATCAAAATCCAA
GGCGCCGTCAACACCCACATCAGCCAGATCATGTTTAACATGCGCGAGAT
CAAGAACATCTTCGCCGAGGAGGAATTTAGCATCCGCGTGCCAGACCAGC
TTTACCGCGGCGGCAATGTGCAAAAGGAACGGATGACCTTGGAAGACCTT
TCCATGAAGGCGGTGGATGTACGGAATACCATACTTTCGAGGTTAGACAA
GAAAGGGCTTGGGAAGGCCAACATGGCCCTGGAGCGCATCTGTGCGCTGC
TGGACCCGAGGCGGAAGGAGTCCTCAAAAGACCATCCCATCAACGGCAGC
CCAGCTCTGCACATCGCTGCCATCGAGGATGTCAAAATGGTCGCGAAGAC
GTTCGTGGAGGCTACGGCCGGGTCTGCTTCCTCAACCGCTGGGGGTGCAA
GTGGCTGCGGTGGCAGCGGTGGAGGCGAACCCACCCAGCCTGAGCCCAAG
AGGCAGAAAGTC
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