mRNA_H-elongata_contig70728.14739.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70728.14739.1
Unique NamemRNA_H-elongata_contig70728.14739.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig70728.14739.1 vs. uniprot
Match: A0A6H5JDN6_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDN6_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 2.680e-52
Identity = 95/137 (69.34%), Postives = 107/137 (78.10%), Query Frame = 1
Query:   10 RKRYDAVIHDCSLERDLSILPSGDLTGIGDRGVNLSGGQKARVGLARMAYAQVTAILQSCMGIDLVYLTQMQADTYVMDDPMSAVDPAVGRELFSNVICGCLSGKTRILVTHQVHYLRDPAVDEIVVMTNGKIVTRG 420
            +KRYDAVI DC+LERDLS+LPSGD TGIGDRGVNLSGGQKARVGLARMAYA                     ADTY+MDDP+SAVDPAVGRELFS V+CG L G TR+LVTHQVHYLRDP VD+I+VM +GKI+ +G
Sbjct:  492 QKRYDAVIRDCALERDLSLLPSGDQTGIGDRGVNLSGGQKARVGLARMAYAH--------------------ADTYLMDDPLSAVDPAVGRELFSKVVCGRLKGSTRVLVTHQVHYLRDPEVDQIIVMHHGKIIGKG 608          
BLAST of mRNA_H-elongata_contig70728.14739.1 vs. uniprot
Match: D8LSW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW6_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 1.710e-51
Identity = 94/137 (68.61%), Postives = 106/137 (77.37%), Query Frame = 1
Query:   10 RKRYDAVIHDCSLERDLSILPSGDLTGIGDRGVNLSGGQKARVGLARMAYAQVTAILQSCMGIDLVYLTQMQADTYVMDDPMSAVDPAVGRELFSNVICGCLSGKTRILVTHQVHYLRDPAVDEIVVMTNGKIVTRG 420
            +KRYDAVI DC+LERDLS+LPSGD TGIGDRGVNLSGGQKARVGLARMAYA                     ADTY+MDDP+SAVDPAVGRELFS V+CG L G TR+LVTHQVHYL DP VD+I+VM +GKI+ +G
Sbjct:  677 QKRYDAVIRDCALERDLSLLPSGDQTGIGDRGVNLSGGQKARVGLARMAYAH--------------------ADTYLMDDPLSAVDPAVGRELFSKVVCGRLKGSTRVLVTHQVHYLSDPEVDQIIVMHHGKIIGKG 793          
BLAST of mRNA_H-elongata_contig70728.14739.1 vs. uniprot
Match: D8LSW4_ECTSI (Multidrug resistance-associated protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW4_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 1.720e-51
Identity = 94/137 (68.61%), Postives = 106/137 (77.37%), Query Frame = 1
Query:   10 RKRYDAVIHDCSLERDLSILPSGDLTGIGDRGVNLSGGQKARVGLARMAYAQVTAILQSCMGIDLVYLTQMQADTYVMDDPMSAVDPAVGRELFSNVICGCLSGKTRILVTHQVHYLRDPAVDEIVVMTNGKIVTRG 420
            +KRYDAVI DC+LERDLS+LPSGD TGIGD+GVNLSGGQKARVGLARMAYA                     ADTY+MDDP+SAVDPAVGRELFS V+CG L G TR+LVTHQVHY RDP VD+I+VM +GKIV +G
Sbjct:  540 QKRYDAVIRDCALERDLSLLPSGDQTGIGDKGVNLSGGQKARVGLARMAYAH--------------------ADTYLMDDPLSAVDPAVGRELFSKVVCGRLKGSTRVLVTHQVHYFRDPEVDQIIVMHHGKIVGKG 656          
BLAST of mRNA_H-elongata_contig70728.14739.1 vs. uniprot
Match: D8LSW3_ECTSI (Multidrug resistance-associated protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW3_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 3.200e-51
Identity = 95/137 (69.34%), Postives = 105/137 (76.64%), Query Frame = 1
Query:   10 RKRYDAVIHDCSLERDLSILPSGDLTGIGDRGVNLSGGQKARVGLARMAYAQVTAILQSCMGIDLVYLTQMQADTYVMDDPMSAVDPAVGRELFSNVICGCLSGKTRILVTHQVHYLRDPAVDEIVVMTNGKIVTRG 420
            +KRYDAVI DC+LERDLS+LPSGD TGIGDRGVNLSGGQKARVGLARMAYA                     ADTY+MDDP+SAVDPAVGRELFS V+CG L   TR+LVTHQVHYLRDP VD+I+VM  GKIV +G
Sbjct:  508 QKRYDAVIRDCALERDLSLLPSGDQTGIGDRGVNLSGGQKARVGLARMAYAH--------------------ADTYLMDDPLSAVDPAVGRELFSKVVCGRLKESTRVLVTHQVHYLRDPEVDQIIVMHQGKIVGKG 624          
BLAST of mRNA_H-elongata_contig70728.14739.1 vs. uniprot
Match: A0A6H5JDL0_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL0_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 2.050e-50
Identity = 94/137 (68.61%), Postives = 105/137 (76.64%), Query Frame = 1
Query:   10 RKRYDAVIHDCSLERDLSILPSGDLTGIGDRGVNLSGGQKARVGLARMAYAQVTAILQSCMGIDLVYLTQMQADTYVMDDPMSAVDPAVGRELFSNVICGCLSGKTRILVTHQVHYLRDPAVDEIVVMTNGKIVTRG 420
            RKRYDAVI DC+LERDLS LPSGD TGIGD+GVNLSGGQKARVGLARMAYA                     ADTY+MDDP+SAVDPAVGR+LFS V+ G L G TR+LVTHQVHYLRDP VD+I+VM +GKIV +G
Sbjct:  461 RKRYDAVIRDCALERDLSFLPSGDQTGIGDKGVNLSGGQKARVGLARMAYAH--------------------ADTYLMDDPLSAVDPAVGRKLFSQVVSGRLKGSTRVLVTHQVHYLRDPEVDQIIVMHDGKIVGKG 577          
BLAST of mRNA_H-elongata_contig70728.14739.1 vs. uniprot
Match: A0A835YMC7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMC7_9STRA)

HSP 1 Score: 152 bits (384), Expect = 4.850e-40
Identity = 77/138 (55.80%), Postives = 97/138 (70.29%), Query Frame = 1
Query:   10 RKRYDAVIHDCSLERDLSILPSGDLTGIGDRGVNLSGGQKARVGLARMAYAQVTAILQSCMGIDLVYLTQMQADTYVMDDPMSAVDPAVGRELFSNVICGCLSGKTRILVTHQVHYLRDPAVDEIVVMTNGKIVTRGR 423
            R +Y+AV+  C L RDLS+LP GD+T IGDRGVNLSGGQ+ARVGLAR+AYA V                      Y++DDP+SAVDP VGR LF +V+CG L+GKTR+LVTHQ+ +L+ P VD +VVM NG IV +G+
Sbjct:  820 RPKYEAVLDACELRRDLSMLPDGDMTLIGDRGVNLSGGQRARVGLARVAYADVPL--------------------YLLDDPLSAVDPKVGRHLFKHVVCGLLAGKTRVLVTHQLQHLKAPEVDSVVVMHNGAIVAQGK 937          
BLAST of mRNA_H-elongata_contig70728.14739.1 vs. uniprot
Match: F4NVY7_BATDJ (Uncharacterized protein n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=F4NVY7_BATDJ)

HSP 1 Score: 135 bits (340), Expect = 4.020e-34
Identity = 75/141 (53.19%), Postives = 91/141 (64.54%), Query Frame = 1
Query:    1 LPWRK-RYDAVIHDCSLERDLSILPSGDLTGIGDRGVNLSGGQKARVGLARMAYAQVTAILQSCMGIDLVYLTQMQADTYVMDDPMSAVDPAVGRELFSNVICGCLSGKTRILVTHQVHYLRDPAVDEIVVMTNGKIVTRG 420
            LP+ + RY A I DCSLERDL+I+  GD T IG+RG+NLSGGQK R+ LARM Y                       D  ++DDP+SAVD  VGR LF N ICG L+GKTRILVTHQ+H+L  P VD I+VM+NG+I   G
Sbjct:  579 LPYEESRYLAAIRDCSLERDLAIMQDGDRTQIGERGINLSGGQKQRINLARMVY--------------------YNNDIVLLDDPLSAVDAHVGRSLFENCICGALAGKTRILVTHQLHFL--PRVDYIIVMSNGEISEHG 697          
BLAST of mRNA_H-elongata_contig70728.14739.1 vs. uniprot
Match: A0A6J2S180_COTGO (multidrug resistance-associated protein 4-like isoform X1 n=1 Tax=Cottoperca gobio TaxID=56716 RepID=A0A6J2S180_COTGO)

HSP 1 Score: 134 bits (338), Expect = 7.470e-34
Identity = 71/136 (52.21%), Postives = 88/136 (64.71%), Query Frame = 1
Query:   13 KRYDAVIHDCSLERDLSILPSGDLTGIGDRGVNLSGGQKARVGLARMAYAQVTAILQSCMGIDLVYLTQMQADTYVMDDPMSAVDPAVGRELFSNVICGCLSGKTRILVTHQVHYLRDPAVDEIVVMTNGKIVTRG 420
            ++YD V+  C+L+RD+ +LP GDLT +GDRG NLSGGQKARV LAR  Y                      AD Y++DDP+SAVD  VGR LF   ICG L  K RILVTHQ+ YL+  AVD+IVV+  G++VTRG
Sbjct:  504 QKYDRVLRACALKRDMDVLPGGDLTMVGDRGANLSGGQKARVSLARAVY--------------------QDADIYLLDDPLSAVDAEVGRHLFEECICGLLRNKPRILVTHQLQYLK--AVDQIVVLKQGQMVTRG 617          
BLAST of mRNA_H-elongata_contig70728.14739.1 vs. uniprot
Match: A0A3Q2GHS4_CYPVA (ATP binding cassette subfamily C member 4 n=4 Tax=Cyprinodon TaxID=28741 RepID=A0A3Q2GHS4_CYPVA)

HSP 1 Score: 134 bits (336), Expect = 1.380e-33
Identity = 69/136 (50.74%), Postives = 88/136 (64.71%), Query Frame = 1
Query:   13 KRYDAVIHDCSLERDLSILPSGDLTGIGDRGVNLSGGQKARVGLARMAYAQVTAILQSCMGIDLVYLTQMQADTYVMDDPMSAVDPAVGRELFSNVICGCLSGKTRILVTHQVHYLRDPAVDEIVVMTNGKIVTRG 420
            K+YD V+  C+L+RD+ +LP GDL G+GDRG NLSGGQKARV LAR  Y                    + AD Y++DDP+SAVD  VGR LF   ICG L  K RILVTHQ+ YL+  A D+IVV+  G+++T+G
Sbjct:  504 KKYDRVLRACALKRDIDLLPGGDLVGVGDRGANLSGGQKARVNLARAVY--------------------LDADIYLLDDPLSAVDAEVGRHLFEECICGLLRKKPRILVTHQLQYLK--AADQIVVLKEGQMITQG 617          
BLAST of mRNA_H-elongata_contig70728.14739.1 vs. uniprot
Match: A0A1S8VM91_9FUNG (Uncharacterized protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VM91_9FUNG)

HSP 1 Score: 132 bits (331), Expect = 6.490e-33
Identity = 70/135 (51.85%), Postives = 86/135 (63.70%), Query Frame = 1
Query:   16 RYDAVIHDCSLERDLSILPSGDLTGIGDRGVNLSGGQKARVGLARMAYAQVTAILQSCMGIDLVYLTQMQADTYVMDDPMSAVDPAVGRELFSNVICGCLSGKTRILVTHQVHYLRDPAVDEIVVMTNGKIVTRG 420
            RY A I DCSLERDL++   GD T IG+RG+NLSGGQK R+ LAR+ Y                      +D  ++DDP+SAVD  VGR LF N ICG LSGKTRILVTHQ+H+L  P VD I+VM  G+++  G
Sbjct:  390 RYLATIRDCSLERDLAMFQDGDRTQIGERGINLSGGQKQRINLARLVY--------------------FNSDIVLLDDPLSAVDAHVGRALFDNCICGALSGKTRILVTHQLHFL--PRVDYIIVMNYGEVIENG 502          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70728.14739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JDN6_9PHAE2.680e-5269.34ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LSW6_ECTSI1.710e-5168.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LSW4_ECTSI1.720e-5168.61Multidrug resistance-associated protein-like prote... [more]
D8LSW3_ECTSI3.200e-5169.34Multidrug resistance-associated protein-like prote... [more]
A0A6H5JDL0_9PHAE2.050e-5068.61ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A835YMC7_9STRA4.850e-4055.80Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
F4NVY7_BATDJ4.020e-3453.19Uncharacterized protein n=2 Tax=Batrachochytrium d... [more]
A0A6J2S180_COTGO7.470e-3452.21multidrug resistance-associated protein 4-like iso... [more]
A0A3Q2GHS4_CYPVA1.380e-3350.74ATP binding cassette subfamily C member 4 n=4 Tax=... [more]
A0A1S8VM91_9FUNG6.490e-3351.85Uncharacterized protein n=1 Tax=Batrachochytrium s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70728contigH-elongata_contig70728:1897..3022 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score185.3
Seed ortholog evalue2e-44
Seed eggNOG ortholog2880.D8LSW4
KEGG koko:K05673
KEGG TC3.A.1.208.7
KEGG Pathwayko01523,ko02010,ko04024,ko04976,map01523,map02010,map04024,map04976
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0054@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categoryother localisation
Exons3
Model size426
Cds size426
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70728.14739.1prot_H-elongata_contig70728.14739.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70728 1897..3022 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931106.651058-CDS-H-elongata_contig70728:1896..19741622931106.651058-CDS-H-elongata_contig70728:1896..1974Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70728 1897..1974 -
1691679700.8095126-CDS-H-elongata_contig70728:1896..19741691679700.8095126-CDS-H-elongata_contig70728:1896..1974Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70728 1897..1974 -
1622931106.6682947-CDS-H-elongata_contig70728:2374..25531622931106.6682947-CDS-H-elongata_contig70728:2374..2553Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70728 2375..2553 -
1691679700.8195155-CDS-H-elongata_contig70728:2374..25531691679700.8195155-CDS-H-elongata_contig70728:2374..2553Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70728 2375..2553 -
1622931106.6813338-CDS-H-elongata_contig70728:2853..30221622931106.6813338-CDS-H-elongata_contig70728:2853..3022Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70728 2854..3022 -
1691679700.8352287-CDS-H-elongata_contig70728:2853..30221691679700.8352287-CDS-H-elongata_contig70728:2853..3022Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70728 2854..3022 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70728.14739.1

>prot_H-elongata_contig70728.14739.1 ID=prot_H-elongata_contig70728.14739.1|Name=mRNA_H-elongata_contig70728.14739.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=142bp
LPWRKRYDAVIHDCSLERDLSILPSGDLTGIGDRGVNLSGGQKARVGLAR
MAYAQVTAILQSCMGIDLVYLTQMQADTYVMDDPMSAVDPAVGRELFSNV
ICGCLSGKTRILVTHQVHYLRDPAVDEIVVMTNGKIVTRGR*
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mRNA from alignment at H-elongata_contig70728:1897..3022-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70728.14739.1 ID=mRNA_H-elongata_contig70728.14739.1|Name=mRNA_H-elongata_contig70728.14739.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1126bp|location=Sequence derived from alignment at H-elongata_contig70728:1897..3022- (Himanthalia elongata Himel1 dioecious)
TTGCCGTGGCGCAAAAGGTACGACGCGGTGATACACGACTGCTCCCTGGA GCGAGATCTGTCCATTCTGCCCTCAGGGGACCTCACCGGCATCGGCGACA GAGGTGTTAACCTCTCTGGGGGACAGAAGGCCAGGGTTGGGCTCGCTCGC ATGGCCTACGCACAGGTGAGTTCTTTCCCTGGACTCGTGTGATTGGAGCT AGTTTAGGGATATGAAAGAGATGTATTGAAAAATAAATGTGTTTTTAACT CAGTCTCCTCTTCTTTTTAGGAAGGGGCAGGGGAAAGCGTTGTTGTATCC TCTATACCTACGAAGTGCTTTTTTCTCCCTTTAAAGCATGTGAGGATGGC GACACGCACCCACGTGGACACCTCGGAGAACATGAGAGATCAGTATTTAT GTGTCCTCGGCGATCAGGCCGGTGGAGTGACATCCCCCCTATTCGGCTGA CTAAAACATGTGGTTTTAGCTGCCATCCTACAAAGTTGTATGGGAATTGA TCTGGTTTATTTGACTCAAATGCAGGCCGACACGTATGTGATGGACGATC CCATGTCGGCGGTGGACCCTGCGGTGGGACGGGAGCTGTTTTCTAACGTG ATCTGCGGCTGCCTGTCGGGGAAGACTCGAATTCTCGTCACTCACCAGGT GTTCAACTTGAACCCTTAGGGTCCAGAGTTATTACTGCCCCCCCCACCCC CCCACCTGTTCCATGGGAGCAATTTCGCGCGTGGAGAAAAATGGATTGAA ATTATGATGACAAATATATACCGTACTGTAAACTAGATAATTGTCACTTT TTTTACCTAGTACTTGGACTTCAAAATCGATATCAAATACCTGTATCAGC AATAACTGGACACTACATTTATACAGGTACTATACATTAAGCATAGATTG GGTTTACCGCCCAAGACTAATATGATGCCGTGGCGGCGGGTACGTTTGCA TTACTGTTGATAGCTACGCGCGTGCTGAATTAAGGCGTGATCCCTTGCGG GTTTTCTTGTGTATACACCAACACTTCCTGTGCAATCTCGGTATACAGGT ACACTACCTAAGGGACCCGGCGGTTGACGAGATCGTGGTGATGACAAATG GAAAGATTGTCACCAGAGGAAGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig70728:1897..3022-

>mRNA_H-elongata_contig70728.14739.1 ID=mRNA_H-elongata_contig70728.14739.1|Name=mRNA_H-elongata_contig70728.14739.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=852bp|location=Sequence derived from alignment at H-elongata_contig70728:1897..3022- (Himanthalia elongata Himel1 dioecious)
TTGCCGTGGCGCAAAAGGTACGACGCGGTGATACACGACTGCTCCCTGGA
GCGAGATCTGTCCATTCTGCCCTCAGGGGACCTCACCGGCATCGGCGACA
GAGGTGTTAACCTCTCTGGGGGACAGAAGGCCAGGGTTGGGCTCGCTCGC
ATGGCCTACGCACAGGTGATTGCCGTGGCGCAAAAGGTACGACGCGGTGA
TACACGACTGCTCCCTGGAGCGAGATCTGTCCATTCTGCCCTCAGGGGAC
CTCACCGGCATCGGCGACAGAGGTGTTAACCTCTCTGGGGGACAGAAGGC
CAGGGTTGGGCTCGCTCGCATGGCCTACGCACAGGTGACTGCCATCCTAC
AAAGTTGTATGGGAATTGATCTGGTTTATTTGACTCAAATGCAGGCCGAC
ACGTATGTGATGGACGATCCCATGTCGGCGGTGGACCCTGCGGTGGGACG
GGAGCTGTTTTCTAACGTGATCTGCGGCTGCCTGTCGGGGAAGACTCGAA
TTCTCGTCACTCACCAGCTGCCATCCTACAAAGTTGTATGGGAATTGATC
TGGTTTATTTGACTCAAATGCAGGCCGACACGTATGTGATGGACGATCCC
ATGTCGGCGGTGGACCCTGCGGTGGGACGGGAGCTGTTTTCTAACGTGAT
CTGCGGCTGCCTGTCGGGGAAGACTCGAATTCTCGTCACTCACCAGGTAC
ACTACCTAAGGGACCCGGCGGTTGACGAGATCGTGGTGATGACAAATGGA
AAGATTGTCACCAGAGGAAGGTAGGTACACTACCTAAGGGACCCGGCGGT
TGACGAGATCGTGGTGATGACAAATGGAAAGATTGTCACCAGAGGAAGGT
AG
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