mRNA_H-elongata_contig70728.14739.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig70728.14739.1 vs. uniprot
Match: A0A6H5JDN6_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDN6_9PHAE) HSP 1 Score: 187 bits (475), Expect = 2.680e-52 Identity = 95/137 (69.34%), Postives = 107/137 (78.10%), Query Frame = 1
Query: 10 RKRYDAVIHDCSLERDLSILPSGDLTGIGDRGVNLSGGQKARVGLARMAYAQVTAILQSCMGIDLVYLTQMQADTYVMDDPMSAVDPAVGRELFSNVICGCLSGKTRILVTHQVHYLRDPAVDEIVVMTNGKIVTRG 420
+KRYDAVI DC+LERDLS+LPSGD TGIGDRGVNLSGGQKARVGLARMAYA ADTY+MDDP+SAVDPAVGRELFS V+CG L G TR+LVTHQVHYLRDP VD+I+VM +GKI+ +G
Sbjct: 492 QKRYDAVIRDCALERDLSLLPSGDQTGIGDRGVNLSGGQKARVGLARMAYAH--------------------ADTYLMDDPLSAVDPAVGRELFSKVVCGRLKGSTRVLVTHQVHYLRDPEVDQIIVMHHGKIIGKG 608
BLAST of mRNA_H-elongata_contig70728.14739.1 vs. uniprot
Match: D8LSW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW6_ECTSI) HSP 1 Score: 185 bits (469), Expect = 1.710e-51 Identity = 94/137 (68.61%), Postives = 106/137 (77.37%), Query Frame = 1
Query: 10 RKRYDAVIHDCSLERDLSILPSGDLTGIGDRGVNLSGGQKARVGLARMAYAQVTAILQSCMGIDLVYLTQMQADTYVMDDPMSAVDPAVGRELFSNVICGCLSGKTRILVTHQVHYLRDPAVDEIVVMTNGKIVTRG 420
+KRYDAVI DC+LERDLS+LPSGD TGIGDRGVNLSGGQKARVGLARMAYA ADTY+MDDP+SAVDPAVGRELFS V+CG L G TR+LVTHQVHYL DP VD+I+VM +GKI+ +G
Sbjct: 677 QKRYDAVIRDCALERDLSLLPSGDQTGIGDRGVNLSGGQKARVGLARMAYAH--------------------ADTYLMDDPLSAVDPAVGRELFSKVVCGRLKGSTRVLVTHQVHYLSDPEVDQIIVMHHGKIIGKG 793
BLAST of mRNA_H-elongata_contig70728.14739.1 vs. uniprot
Match: D8LSW4_ECTSI (Multidrug resistance-associated protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW4_ECTSI) HSP 1 Score: 185 bits (469), Expect = 1.720e-51 Identity = 94/137 (68.61%), Postives = 106/137 (77.37%), Query Frame = 1
Query: 10 RKRYDAVIHDCSLERDLSILPSGDLTGIGDRGVNLSGGQKARVGLARMAYAQVTAILQSCMGIDLVYLTQMQADTYVMDDPMSAVDPAVGRELFSNVICGCLSGKTRILVTHQVHYLRDPAVDEIVVMTNGKIVTRG 420
+KRYDAVI DC+LERDLS+LPSGD TGIGD+GVNLSGGQKARVGLARMAYA ADTY+MDDP+SAVDPAVGRELFS V+CG L G TR+LVTHQVHY RDP VD+I+VM +GKIV +G
Sbjct: 540 QKRYDAVIRDCALERDLSLLPSGDQTGIGDKGVNLSGGQKARVGLARMAYAH--------------------ADTYLMDDPLSAVDPAVGRELFSKVVCGRLKGSTRVLVTHQVHYFRDPEVDQIIVMHHGKIVGKG 656
BLAST of mRNA_H-elongata_contig70728.14739.1 vs. uniprot
Match: D8LSW3_ECTSI (Multidrug resistance-associated protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW3_ECTSI) HSP 1 Score: 184 bits (467), Expect = 3.200e-51 Identity = 95/137 (69.34%), Postives = 105/137 (76.64%), Query Frame = 1
Query: 10 RKRYDAVIHDCSLERDLSILPSGDLTGIGDRGVNLSGGQKARVGLARMAYAQVTAILQSCMGIDLVYLTQMQADTYVMDDPMSAVDPAVGRELFSNVICGCLSGKTRILVTHQVHYLRDPAVDEIVVMTNGKIVTRG 420
+KRYDAVI DC+LERDLS+LPSGD TGIGDRGVNLSGGQKARVGLARMAYA ADTY+MDDP+SAVDPAVGRELFS V+CG L TR+LVTHQVHYLRDP VD+I+VM GKIV +G
Sbjct: 508 QKRYDAVIRDCALERDLSLLPSGDQTGIGDRGVNLSGGQKARVGLARMAYAH--------------------ADTYLMDDPLSAVDPAVGRELFSKVVCGRLKESTRVLVTHQVHYLRDPEVDQIIVMHQGKIVGKG 624
BLAST of mRNA_H-elongata_contig70728.14739.1 vs. uniprot
Match: A0A6H5JDL0_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL0_9PHAE) HSP 1 Score: 182 bits (461), Expect = 2.050e-50 Identity = 94/137 (68.61%), Postives = 105/137 (76.64%), Query Frame = 1
Query: 10 RKRYDAVIHDCSLERDLSILPSGDLTGIGDRGVNLSGGQKARVGLARMAYAQVTAILQSCMGIDLVYLTQMQADTYVMDDPMSAVDPAVGRELFSNVICGCLSGKTRILVTHQVHYLRDPAVDEIVVMTNGKIVTRG 420
RKRYDAVI DC+LERDLS LPSGD TGIGD+GVNLSGGQKARVGLARMAYA ADTY+MDDP+SAVDPAVGR+LFS V+ G L G TR+LVTHQVHYLRDP VD+I+VM +GKIV +G
Sbjct: 461 RKRYDAVIRDCALERDLSFLPSGDQTGIGDKGVNLSGGQKARVGLARMAYAH--------------------ADTYLMDDPLSAVDPAVGRKLFSQVVSGRLKGSTRVLVTHQVHYLRDPEVDQIIVMHDGKIVGKG 577
BLAST of mRNA_H-elongata_contig70728.14739.1 vs. uniprot
Match: A0A835YMC7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMC7_9STRA) HSP 1 Score: 152 bits (384), Expect = 4.850e-40 Identity = 77/138 (55.80%), Postives = 97/138 (70.29%), Query Frame = 1
Query: 10 RKRYDAVIHDCSLERDLSILPSGDLTGIGDRGVNLSGGQKARVGLARMAYAQVTAILQSCMGIDLVYLTQMQADTYVMDDPMSAVDPAVGRELFSNVICGCLSGKTRILVTHQVHYLRDPAVDEIVVMTNGKIVTRGR 423
R +Y+AV+ C L RDLS+LP GD+T IGDRGVNLSGGQ+ARVGLAR+AYA V Y++DDP+SAVDP VGR LF +V+CG L+GKTR+LVTHQ+ +L+ P VD +VVM NG IV +G+
Sbjct: 820 RPKYEAVLDACELRRDLSMLPDGDMTLIGDRGVNLSGGQRARVGLARVAYADVPL--------------------YLLDDPLSAVDPKVGRHLFKHVVCGLLAGKTRVLVTHQLQHLKAPEVDSVVVMHNGAIVAQGK 937
BLAST of mRNA_H-elongata_contig70728.14739.1 vs. uniprot
Match: F4NVY7_BATDJ (Uncharacterized protein n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=F4NVY7_BATDJ) HSP 1 Score: 135 bits (340), Expect = 4.020e-34 Identity = 75/141 (53.19%), Postives = 91/141 (64.54%), Query Frame = 1
Query: 1 LPWRK-RYDAVIHDCSLERDLSILPSGDLTGIGDRGVNLSGGQKARVGLARMAYAQVTAILQSCMGIDLVYLTQMQADTYVMDDPMSAVDPAVGRELFSNVICGCLSGKTRILVTHQVHYLRDPAVDEIVVMTNGKIVTRG 420
LP+ + RY A I DCSLERDL+I+ GD T IG+RG+NLSGGQK R+ LARM Y D ++DDP+SAVD VGR LF N ICG L+GKTRILVTHQ+H+L P VD I+VM+NG+I G
Sbjct: 579 LPYEESRYLAAIRDCSLERDLAIMQDGDRTQIGERGINLSGGQKQRINLARMVY--------------------YNNDIVLLDDPLSAVDAHVGRSLFENCICGALAGKTRILVTHQLHFL--PRVDYIIVMSNGEISEHG 697
BLAST of mRNA_H-elongata_contig70728.14739.1 vs. uniprot
Match: A0A6J2S180_COTGO (multidrug resistance-associated protein 4-like isoform X1 n=1 Tax=Cottoperca gobio TaxID=56716 RepID=A0A6J2S180_COTGO) HSP 1 Score: 134 bits (338), Expect = 7.470e-34 Identity = 71/136 (52.21%), Postives = 88/136 (64.71%), Query Frame = 1
Query: 13 KRYDAVIHDCSLERDLSILPSGDLTGIGDRGVNLSGGQKARVGLARMAYAQVTAILQSCMGIDLVYLTQMQADTYVMDDPMSAVDPAVGRELFSNVICGCLSGKTRILVTHQVHYLRDPAVDEIVVMTNGKIVTRG 420
++YD V+ C+L+RD+ +LP GDLT +GDRG NLSGGQKARV LAR Y AD Y++DDP+SAVD VGR LF ICG L K RILVTHQ+ YL+ AVD+IVV+ G++VTRG
Sbjct: 504 QKYDRVLRACALKRDMDVLPGGDLTMVGDRGANLSGGQKARVSLARAVY--------------------QDADIYLLDDPLSAVDAEVGRHLFEECICGLLRNKPRILVTHQLQYLK--AVDQIVVLKQGQMVTRG 617
BLAST of mRNA_H-elongata_contig70728.14739.1 vs. uniprot
Match: A0A3Q2GHS4_CYPVA (ATP binding cassette subfamily C member 4 n=4 Tax=Cyprinodon TaxID=28741 RepID=A0A3Q2GHS4_CYPVA) HSP 1 Score: 134 bits (336), Expect = 1.380e-33 Identity = 69/136 (50.74%), Postives = 88/136 (64.71%), Query Frame = 1
Query: 13 KRYDAVIHDCSLERDLSILPSGDLTGIGDRGVNLSGGQKARVGLARMAYAQVTAILQSCMGIDLVYLTQMQADTYVMDDPMSAVDPAVGRELFSNVICGCLSGKTRILVTHQVHYLRDPAVDEIVVMTNGKIVTRG 420
K+YD V+ C+L+RD+ +LP GDL G+GDRG NLSGGQKARV LAR Y + AD Y++DDP+SAVD VGR LF ICG L K RILVTHQ+ YL+ A D+IVV+ G+++T+G
Sbjct: 504 KKYDRVLRACALKRDIDLLPGGDLVGVGDRGANLSGGQKARVNLARAVY--------------------LDADIYLLDDPLSAVDAEVGRHLFEECICGLLRKKPRILVTHQLQYLK--AADQIVVLKEGQMITQG 617
BLAST of mRNA_H-elongata_contig70728.14739.1 vs. uniprot
Match: A0A1S8VM91_9FUNG (Uncharacterized protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VM91_9FUNG) HSP 1 Score: 132 bits (331), Expect = 6.490e-33 Identity = 70/135 (51.85%), Postives = 86/135 (63.70%), Query Frame = 1
Query: 16 RYDAVIHDCSLERDLSILPSGDLTGIGDRGVNLSGGQKARVGLARMAYAQVTAILQSCMGIDLVYLTQMQADTYVMDDPMSAVDPAVGRELFSNVICGCLSGKTRILVTHQVHYLRDPAVDEIVVMTNGKIVTRG 420
RY A I DCSLERDL++ GD T IG+RG+NLSGGQK R+ LAR+ Y +D ++DDP+SAVD VGR LF N ICG LSGKTRILVTHQ+H+L P VD I+VM G+++ G
Sbjct: 390 RYLATIRDCSLERDLAMFQDGDRTQIGERGINLSGGQKQRINLARLVY--------------------FNSDIVLLDDPLSAVDAHVGRALFDNCICGALSGKTRILVTHQLHFL--PRVDYIIVMNYGEVIENG 502 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70728.14739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig70728.14739.1 >prot_H-elongata_contig70728.14739.1 ID=prot_H-elongata_contig70728.14739.1|Name=mRNA_H-elongata_contig70728.14739.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=142bp LPWRKRYDAVIHDCSLERDLSILPSGDLTGIGDRGVNLSGGQKARVGLARback to top mRNA from alignment at H-elongata_contig70728:1897..3022- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig70728.14739.1 ID=mRNA_H-elongata_contig70728.14739.1|Name=mRNA_H-elongata_contig70728.14739.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1126bp|location=Sequence derived from alignment at H-elongata_contig70728:1897..3022- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig70728:1897..3022- >mRNA_H-elongata_contig70728.14739.1 ID=mRNA_H-elongata_contig70728.14739.1|Name=mRNA_H-elongata_contig70728.14739.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=852bp|location=Sequence derived from alignment at H-elongata_contig70728:1897..3022- (Himanthalia elongata Himel1 dioecious)back to top |