mRNA_H-elongata_contig70707.14737.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70707.14737.1
Unique NamemRNA_H-elongata_contig70707.14737.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig70707.14737.1 vs. uniprot
Match: A0A6H5KIH1_9PHAE (PPM-type phosphatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KIH1_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 1.450e-50
Identity = 88/102 (86.27%), Postives = 96/102 (94.12%), Query Frame = 1 
Query:    4 QMVGPYASSRQLELSDHILIGRTGFSINRFDWGVWEDRGARRTMEDKSVVIQARYADMGVESLTSLGLGPQTFLAVYDGHGGAEASAFLWRRLHVAVAEALE 309
            Q+VGPYA+SR+L+LSDHILIGRTGFSINR+DWGVWEDRGARR+MEDKSVVIQ    DMGVESLTSLGLGPQTFLAVYDGHGG EAS FLW+RLHVA+AEALE
Sbjct:  560 QLVGPYANSRRLQLSDHILIGRTGFSINRYDWGVWEDRGARRSMEDKSVVIQ----DMGVESLTSLGLGPQTFLAVYDGHGGGEASTFLWQRLHVAIAEALE 657
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BLAST of mRNA_H-elongata_contig70707.14737.1 vs. uniprot
Match: A0A7S4DEC0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DEC0_HETAK)

HSP 1 Score: 138 bits (348), Expect = 5.490e-38
Identity = 67/102 (65.69%), Postives = 83/102 (81.37%), Query Frame = 1 
Query:    4 QMVGPYASSRQLELSDHILIGRTGFSINRFDWGVWEDRGARRTMEDKSVVIQARYADMGVESLTSLGLGPQTFLAVYDGHGGAEASAFLWRRLHVAVAEALE 309
            Q+VGPYA+S +L  SDHIL+GRTGFSINRFD+GV E+ G R  MEDKS++IQ    D+G+E L  LG+GPQ+F+AVYDGHGGA AS +LWR LH+ V+EALE
Sbjct:   77 QLVGPYANSYKLTFSDHILVGRTGFSINRFDYGVSEEIGRRPNMEDKSIIIQ----DLGIEHLYQLGMGPQSFVAVYDGHGGAHASNYLWRHLHLNVSEALE 174
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BLAST of mRNA_H-elongata_contig70707.14737.1 vs. uniprot
Match: D7FNP4_ECTSI (Putative serine/threonine phosphatase 2C ptc2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNP4_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 1.910e-30
Identity = 60/102 (58.82%), Postives = 74/102 (72.55%), Query Frame = 1 
Query:    4 QMVGPYASSRQLELSDHILIGRTGFSINRFDWGVWEDRGARRTMEDKSVVIQARYADMGVESLTSLGLGPQTFLAVYDGHGGAEASAFLWRRLHV--AVAEA 303
            QMVGPY S R+L L DH+L+GRTGFS+NRFD+G+ E  GAR TMED+S+VIQ    D+ +  L    L PQTF AVYDGHGG +AS +LW  LH   A++EA
Sbjct:   54 QMVGPYVSHRRLALGDHLLVGRTGFSVNRFDYGISERMGARPTMEDRSIVIQ----DLALPGLEGTYLWPQTFTAVYDGHGGGQASEYLWGNLHTKEAISEA 151
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BLAST of mRNA_H-elongata_contig70707.14737.1 vs. uniprot
Match: A0A836CBM8_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBM8_9STRA)

HSP 1 Score: 122 bits (305), Expect = 3.720e-30
Identity = 59/102 (57.84%), Postives = 77/102 (75.49%), Query Frame = 1 
Query:    4 QMVGPYASSRQLELSDHILIGRTGFSINRFDWGVWEDRGARRTMEDKSVVIQARYADMGVESLTSLGLGPQTFLAVYDGHGGAEASAFLWRRLHVAVAEALE 309
            Q+VGPYA+  +L LSDH L+GRTGFS+NRFD+GV E  G+R +MEDKS +IQ    DM V  LT   L PQTF+ V+DGHGGA+AS +LW  LH+ +A++L+
Sbjct:  243 QLVGPYANKYRLGLSDHFLVGRTGFSVNRFDYGVSERMGSRPSMEDKSTIIQ----DMAVAGLTGTHLWPQTFVGVFDGHGGAQASEYLWDNLHLRLADSLQ 340
[Close]
BLAST of mRNA_H-elongata_contig70707.14737.1 vs. uniprot
Match: A0A6H5LAB3_9PHAE (FHA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAB3_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.530e-29
Identity = 58/101 (57.43%), Postives = 72/101 (71.29%), Query Frame = 1 
Query:    4 QMVGPYASSRQLELSDHILIGRTGFSINRFDWGVWEDRGARRTMEDKSVVIQARYADMGVESLTSLGLGPQTFLAVYDGHGGAEASAFLWRRLHVAVAEAL 306
            QMVGPY S R++ L DH+L+GRTGFS+NRFD+G+ E  GAR TMED+S+VIQ    D+ +  L    L PQTF AVYDGHGG +AS +LW  LH  V  +L
Sbjct:  570 QMVGPYVSHRRMSLGDHLLVGRTGFSVNRFDYGISERMGARPTMEDRSIVIQ----DLALPGLEGTYLWPQTFAAVYDGHGGGQASEYLWGNLHTKVTSSL 666
[Close]
BLAST of mRNA_H-elongata_contig70707.14737.1 vs. uniprot
Match: W7U755_9STRA (Protein phosphatase 1b2 53 kDa isoform n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U755_9STRA)

HSP 1 Score: 119 bits (298), Expect = 3.970e-29
Identity = 59/102 (57.84%), Postives = 75/102 (73.53%), Query Frame = 1 
Query:    4 QMVGPYASSRQLELSDHILIGRTGFSINRFDWGVWEDRGARRTMEDKSVVIQARYADMGVESLTSLGLGPQTFLAVYDGHGGAEASAFLWRRLHVAVAEALE 309
            Q+ GPYA +  L L D I++GRTGFSINR+D+G+ E+RG R+TMED ++VIQ    D+GV +L   GL PQTF AV+DGHGG EASA+L   LHV + E LE
Sbjct:  667 QLAGPYAKAYNLSLGDEIMVGRTGFSINRYDYGISEERGRRKTMEDHTLVIQ----DLGVRALKRFGLAPQTFAAVFDGHGGEEASAYLACHLHVNLREELE 764
[Close]
BLAST of mRNA_H-elongata_contig70707.14737.1 vs. uniprot
Match: A0A7S2FV88_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FV88_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.350e-28
Identity = 57/102 (55.88%), Postives = 76/102 (74.51%), Query Frame = 1 
Query:    4 QMVGPYASSRQLELSDHILIGRTGFSINRFDWGVWEDRGARRTMEDKSVVIQARYADMGVESLTSLG-LGPQTFLAVYDGHGGAEASAFLWRRLHVAVAEAL 306
            Q+VGPYA    L L+DHIL+GRTGFS+NRFD+G+ E+ G RR+MEDKS+++Q    DM V  L++L    PQT++ +YDGHGG EAS FLW++LH  V  +L
Sbjct:  182 QLVGPYAGRYPLHLNDHILVGRTGFSVNRFDFGISEETGMRRSMEDKSIMVQ----DMRVPELSALAPYSPQTWMGIYDGHGGTEASHFLWQQLHENVKNSL 279
[Close]
BLAST of mRNA_H-elongata_contig70707.14737.1 vs. uniprot
Match: A0A7S2GBR9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GBR9_9STRA)

HSP 1 Score: 115 bits (287), Expect = 7.090e-28
Identity = 57/105 (54.29%), Postives = 76/105 (72.38%), Query Frame = 1 
Query:    4 QMVGPYASSRQLELSDHILIGRTGFSINRFDWGVWEDRGARRTMEDKSVVIQARYADMGVESLTSLG----LGPQTFLAVYDGHGGAEASAFLWRRLHVAVAEAL 306
            Q+VGPYA    L ++DHIL+GRTGFSINR+D+ V E+ G R+TMEDKS+++Q    DM +++L  L       PQT++AVYDGHGG +AS FLW+ LH AV  +L
Sbjct:  192 QLVGPYAGRYPLHVNDHILVGRTGFSINRYDFAVSEEMGMRKTMEDKSIMVQ----DMKIDALNELDAMMHFTPQTWMAVYDGHGGTQASQFLWKELHDAVVASL 292
[Close]
BLAST of mRNA_H-elongata_contig70707.14737.1 vs. uniprot
Match: A0A482RP31_9ARCH (FHA domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RP31_9ARCH)

HSP 1 Score: 103 bits (257), Expect = 5.360e-25
Identity = 50/101 (49.50%), Postives = 69/101 (68.32%), Query Frame = 1 
Query:    4 QMVGPYASSRQLELSDHILIGRTGFSINRFDWGVWEDRGARRTMEDKSVVIQARYADMGVESLTSLGLGPQTFLAVYDGHGGAEASAFLWRRLHVAVAEAL 306
            Q+VGPY    +L L+DHILIGRTGFSINR+D+G+ E+ G R++MED   ++Q     + +  L +  L PQ+F  V+DGHGG  AS +L + LH+ VA AL
Sbjct:   76 QLVGPYGGRYKLSLNDHILIGRTGFSINRYDYGLSEEMGYRQSMEDACTIVQ----HLNISPLNATELSPQSFFGVFDGHGGVSASHYLAQHLHINVAHAL 172
[Close]
BLAST of mRNA_H-elongata_contig70707.14737.1 vs. uniprot
Match: A0A7S0XEJ1_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XEJ1_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.720e-23
Identity = 49/101 (48.51%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:    4 QMVGPYASSRQLELSDHILIGRTGFSINRFDWGVWEDRGARRTMEDKSVVIQARYADMGVESLTSLGLGPQTFLAVYDGHGGAEASAFLWRRLHVAVAEAL 306
            Q+VGPYA   +L L+DHIL+GRTGFS+NR+D+G+ E+ G R TMED   ++Q     + + SL    L PQ+F  V+DGHGG +AS +L + LH+ +A+ L
Sbjct:  269 QLVGPYAGPFKLSLTDHILVGRTGFSVNRYDYGLSEEIGFRPTMEDACTIVQ----HLNISSLNVPSLSPQSFFGVFDGHGGNQASHYLSQNLHINIADGL 365
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70707.14737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KIH1_9PHAE1.450e-5086.27PPM-type phosphatase domain-containing protein n=2... [more]
A0A7S4DEC0_HETAK5.490e-3865.69Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
D7FNP4_ECTSI1.910e-3058.82Putative serine/threonine phosphatase 2C ptc2 n=1 ... [more]
A0A836CBM8_9STRA3.720e-3057.84Phosphatase 2C-like domain-containing protein n=1 ... [more]
A0A6H5LAB3_9PHAE1.530e-2957.43FHA domain-containing protein n=1 Tax=Ectocarpus s... [more]
W7U755_9STRA3.970e-2957.84Protein phosphatase 1b2 53 kDa isoform n=2 Tax=Mon... [more]
A0A7S2FV88_9STRA1.350e-2855.88Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2GBR9_9STRA7.090e-2854.29Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A482RP31_9ARCH5.360e-2549.50FHA domain-containing protein n=1 Tax=archaeon Tax... [more]
A0A7S0XEJ1_9STRA1.720e-2348.51Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70707contigH-elongata_contig70707:1867..2675 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score168.7
Seed ortholog evalue1.4e-39
Seed eggNOG ortholog2880.D7G1B3
KEGG koko:K01090
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size309
Cds size303
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70707.14737.1prot_H-elongata_contig70707.14737.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70707 1867..2669 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931106.5389974-CDS-H-elongata_contig70707:1866..20041622931106.5389974-CDS-H-elongata_contig70707:1866..2004Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70707 1867..2004 -
1691679700.7671924-CDS-H-elongata_contig70707:1866..20041691679700.7671924-CDS-H-elongata_contig70707:1866..2004Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70707 1867..2004 -
1622931106.5552704-CDS-H-elongata_contig70707:2504..26691622931106.5552704-CDS-H-elongata_contig70707:2504..2669Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70707 2505..2669 -
1691679700.780682-CDS-H-elongata_contig70707:2504..26691691679700.780682-CDS-H-elongata_contig70707:2504..2669Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70707 2505..2669 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931106.5707178-UTR-H-elongata_contig70707:2669..26751622931106.5707178-UTR-H-elongata_contig70707:2669..2675Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70707 2670..2675 -
1691679700.79151-UTR-H-elongata_contig70707:2669..26751691679700.79151-UTR-H-elongata_contig70707:2669..2675Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70707 2670..2675 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70707.14737.1

>prot_H-elongata_contig70707.14737.1 ID=prot_H-elongata_contig70707.14737.1|Name=mRNA_H-elongata_contig70707.14737.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MVGPYASSRQLELSDHILIGRTGFSINRFDWGVWEDRGARRTMEDKSVVI
QARYADMGVESLTSLGLGPQTFLAVYDGHGGAEASAFLWRRLHVAVAEAL
E
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mRNA from alignment at H-elongata_contig70707:1867..2675-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70707.14737.1 ID=mRNA_H-elongata_contig70707.14737.1|Name=mRNA_H-elongata_contig70707.14737.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=809bp|location=Sequence derived from alignment at H-elongata_contig70707:1867..2675- (Himanthalia elongata Himel1 dioecious)
TTTCAGATGGTGGGACCGTACGCGAGCAGCCGACAGCTCGAGCTGAGCGA
TCATATCCTGATTGGCCGTACCGGGTTTAGTATCAACCGCTTCGACTGGG
GCGTGTGGGAAGATCGAGGCGCTCGCCGAACTATGGAAGACAAAAGCGTG
GTGATCCAGGCAAGATATGCCGTAACGAGAGACGCAATGTCTAGAAGTGA
AAGAAAACTTTTTGCGCGTGAGGTTTAACCACCAGAATGTTCTTCCTTTT
TTCTCGATCTCTCTTTTTCTTTGTTGTAGGGAGTGGACAGCCGCTGGGTT
GGATACTGATACTTAATGGTAGTTTTTCTTTCTATTTTGATTTCTTGTGT
GGCCAGACTACCGCTGAGCGCGCGGGGAGAGTCTCTTGTTCTTCACCGAT
TTAATATTTGATTTATTTTTTAAATGGACTTCACTGCCCTCTATCTTTAT
CTGTTATAGTCCCCTTCTTAAATCTTCTGGGCGAAGCTGTCGTATAGCCT
GTTCATAAACGGTCCGGACGGAACGGGTTGCTCGGTGCTGCTGAAGGAGA
GGCCACGCCTCGTGTGTAAATCATTGTTTACGAGCTAAGACAAAAAAAAG
GCATAGCGACCACCGCCGCCCAACTGTATTGCGCCCCCCTCCTCCTCCTC
TCCATACCTCCACGATATCAGGATATGGGCGTAGAGTCACTCACGTCTCT
TGGCCTCGGGCCCCAGACCTTTCTAGCCGTCTACGATGGTCACGGGGGTG
CGGAGGCCAGCGCCTTCCTTTGGCGACGCTTGCACGTGGCGGTCGCGGAG
GCCCTGGAA
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Coding sequence (CDS) from alignment at H-elongata_contig70707:1867..2675-

>mRNA_H-elongata_contig70707.14737.1 ID=mRNA_H-elongata_contig70707.14737.1|Name=mRNA_H-elongata_contig70707.14737.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig70707:1867..2675- (Himanthalia elongata Himel1 dioecious)
ATGGTGGGACCGTACGCGAGCAGCCGACAGCTCGAGCTGAGCGATCATAT
CCTGATTGGCCGTACCGGGTTTAGTATCAACCGCTTCGACTGGGGCGTGT
GGGAAGATCGAGGCGCTCGCCGAACTATGGAAGACAAAAGCGTGGTGATC
CAGGCAAGATATGCCATGGTGGGACCGTACGCGAGCAGCCGACAGCTCGA
GCTGAGCGATCATATCCTGATTGGCCGTACCGGGTTTAGTATCAACCGCT
TCGACTGGGGCGTGTGGGAAGATCGAGGCGCTCGCCGAACTATGGAAGAC
AAAAGCGTGGTGATCCAGGCAAGATATGCCGATATGGGCGTAGAGTCACT
CACGTCTCTTGGCCTCGGGCCCCAGACCTTTCTAGCCGTCTACGATGGTC
ACGGGGGTGCGGAGGCCAGCGCCTTCCTTTGGCGACGCTTGCACGTGGCG
GTCGCGGAGGCCCTGGAAGATATGGGCGTAGAGTCACTCACGTCTCTTGG
CCTCGGGCCCCAGACCTTTCTAGCCGTCTACGATGGTCACGGGGGTGCGG
AGGCCAGCGCCTTCCTTTGGCGACGCTTGCACGTGGCGGTCGCGGAGGCC
CTGGAA
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