mRNA_H-elongata_contig7069.14736.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7069.14736.1
Unique NamemRNA_H-elongata_contig7069.14736.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7069.14736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7069contigH-elongata_contig7069:7280..7689 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size410
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931106.3120584-CDS-H-elongata_contig7069:7279..76211622931106.3120584-CDS-H-elongata_contig7069:7279..7621Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7069 7280..7621 +
1691679700.6541655-CDS-H-elongata_contig7069:7279..76211691679700.6541655-CDS-H-elongata_contig7069:7279..7621Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7069 7280..7621 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931106.326811-UTR-H-elongata_contig7069:7621..76891622931106.326811-UTR-H-elongata_contig7069:7621..7689Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7069 7622..7689 +
1691679700.6677935-UTR-H-elongata_contig7069:7621..76891691679700.6677935-UTR-H-elongata_contig7069:7621..7689Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7069 7622..7689 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7069.14736.1prot_H-elongata_contig7069.14736.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7069 7280..7621 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7069.14736.1

>prot_H-elongata_contig7069.14736.1 ID=prot_H-elongata_contig7069.14736.1|Name=mRNA_H-elongata_contig7069.14736.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
PVAAVPSSRRGLTQLGAAPAPSRSCHRSAFPPKWLLPLPTKPRHRAPKRG
HELRVCCLRWFASGIRSTPLDVDASTSGASSKRLASAWGHFCRGAGPCGF
SVLPKVKAKAWQL*
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mRNA from alignment at H-elongata_contig7069:7280..7689+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7069.14736.1 ID=mRNA_H-elongata_contig7069.14736.1|Name=mRNA_H-elongata_contig7069.14736.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=410bp|location=Sequence derived from alignment at H-elongata_contig7069:7280..7689+ (Himanthalia elongata Himel1 dioecious)
CCCGTGGCAGCCGTGCCTTCGTCGCGGCGAGGCCTGACCCAGCTGGGTGC
TGCACCAGCGCCATCGCGTTCTTGCCACCGTTCAGCGTTCCCACCGAAGT
GGCTCCTTCCCCTCCCCACAAAGCCGCGCCACCGAGCACCCAAGCGAGGG
CATGAACTGCGTGTTTGCTGCCTCCGCTGGTTCGCATCCGGGATCCGCAG
CACGCCTCTCGACGTCGACGCCTCGACCTCAGGGGCGTCGTCAAAACGGT
TGGCGTCTGCTTGGGGTCATTTTTGTCGGGGAGCCGGGCCGTGTGGTTTC
TCTGTATTGCCCAAGGTGAAGGCGAAGGCGTGGCAGTTGTGAGGGTGTAT
CTTTTGGTGACGGTCCTGTGGCGGGCTGGCCCGGCGCAATCGGAGTCGTC
TTCCATCGCC
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Coding sequence (CDS) from alignment at H-elongata_contig7069:7280..7689+

>mRNA_H-elongata_contig7069.14736.1 ID=mRNA_H-elongata_contig7069.14736.1|Name=mRNA_H-elongata_contig7069.14736.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig7069:7280..7689+ (Himanthalia elongata Himel1 dioecious)
CCCGTGGCAGCCGTGCCTTCGTCGCGGCGAGGCCTGACCCAGCTGGGTGC
TGCACCAGCGCCATCGCGTTCTTGCCACCGTTCAGCGTTCCCACCGAAGT
GGCTCCTTCCCCTCCCCACAAAGCCGCGCCACCGAGCACCCAAGCGAGGG
CATGAACTGCGTGTTTGCTGCCTCCGCTGGTTCGCATCCGGGATCCGCAG
CACGCCTCTCGACGTCGACGCCTCGACCTCAGGGGCGTCGTCAAAACGGT
TGGCGTCTGCTTGGGGTCATTTTTGTCGGGGAGCCGGGCCGTGTGGTTTC
TCTGTATTGCCCAAGGTGAAGGCGAAGGCGTGGCAGTTGTGACCCGTGGC
AGCCGTGCCTTCGTCGCGGCGAGGCCTGACCCAGCTGGGTGCTGCACCAG
CGCCATCGCGTTCTTGCCACCGTTCAGCGTTCCCACCGAAGTGGCTCCTT
CCCCTCCCCACAAAGCCGCGCCACCGAGCACCCAAGCGAGGGCATGAACT
GCGTGTTTGCTGCCTCCGCTGGTTCGCATCCGGGATCCGCAGCACGCCTC
TCGACGTCGACGCCTCGACCTCAGGGGCGTCGTCAAAACGGTTGGCGTCT
GCTTGGGGTCATTTTTGTCGGGGAGCCGGGCCGTGTGGTTTCTCTGTATT
GCCCAAGGTGAAGGCGAAGGCGTGGCAGTTGTGA
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