mRNA_H-elongata_contig70642.14727.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70642.14727.1
Unique NamemRNA_H-elongata_contig70642.14727.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig70642.14727.1 vs. uniprot
Match: D8LTY1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTY1_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 4.820e-30
Identity = 57/62 (91.94%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 IFHQQLPKMPKEYIVRLVFDRKHRSIVLIKKGVPIGGITYRHFVAQKFGEIAFCAVASNCQV 186
            IFHQQLPKMPKEYIVRLVFDRKH SIVL KKGVPIGGITYR FV QKFGEIAFCAVASN QV
Sbjct:  103 IFHQQLPKMPKEYIVRLVFDRKHHSIVLTKKGVPIGGITYRPFVEQKFGEIAFCAVASNSQV 164
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BLAST of mRNA_H-elongata_contig70642.14727.1 vs. uniprot
Match: A0A835ZI58_9STRA (Histone acetyltransferase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI58_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.130e-20
Identity = 44/62 (70.97%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:    1 IFHQQLPKMPKEYIVRLVFDRKHRSIVLIKKGVPIGGITYRHFVAQKFGEIAFCAVASNCQV 186
            IF +QLPKMPKEYIVRLVFD +H+S+ L K  VPIGGI YR F  Q+FGEIAFCAV +N QV
Sbjct:   10 IFAKQLPKMPKEYIVRLVFDPRHKSLALCKGDVPIGGICYRPFYDQQFGEIAFCAVTANEQV 71
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BLAST of mRNA_H-elongata_contig70642.14727.1 vs. uniprot
Match: D8THL6_VOLCA (Histone acetyltransferase n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8THL6_VOLCA)

HSP 1 Score: 92.4 bits (228), Expect = 1.190e-20
Identity = 46/63 (73.02%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:    1 IFHQQLPKMPKEYIVRLVFDRKHRSIVLIKK-GVPIGGITYRHFVAQKFGEIAFCAVASNCQV 186
            IF +QLP MPKEYIVRLVFDR+HRS+ L+K+ G  IGGITYR F AQ FGEIAFCAV S+ QV
Sbjct:  102 IFSKQLPNMPKEYIVRLVFDRRHRSVALLKRNGTVIGGITYRAFHAQAFGEIAFCAVTSHEQV 164
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BLAST of mRNA_H-elongata_contig70642.14727.1 vs. uniprot
Match: A0A8J4B5I2_9CHLO (Histone acetyltransferase n=2 Tax=Volvox TaxID=3066 RepID=A0A8J4B5I2_9CHLO)

HSP 1 Score: 92.4 bits (228), Expect = 1.760e-20
Identity = 46/63 (73.02%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:    1 IFHQQLPKMPKEYIVRLVFDRKHRSIVLIKK-GVPIGGITYRHFVAQKFGEIAFCAVASNCQV 186
            IF +QLP MPKEYIVRLVFDR+HRS+ L+K+ G  IGGITYR F AQ FGEIAFCAV S+ QV
Sbjct:  125 IFSKQLPNMPKEYIVRLVFDRRHRSVALLKRNGAVIGGITYRAFHAQTFGEIAFCAVTSHEQV 187
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BLAST of mRNA_H-elongata_contig70642.14727.1 vs. uniprot
Match: A0A482RRZ5_9ARCH (GNAT family N-acetyltransferase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RRZ5_9ARCH)

HSP 1 Score: 88.6 bits (218), Expect = 2.150e-20
Identity = 42/62 (67.74%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    1 IFHQQLPKMPKEYIVRLVFDRKHRSIVLIKKGVPIGGITYRHFVAQKFGEIAFCAVASNCQV 186
            IF +QLPKMPKEYIVRLVFD +H+S+ + ++G  IGGI YR + AQ+FGEIAFCAV SN QV
Sbjct:   95 IFARQLPKMPKEYIVRLVFDDRHKSLAIKRQGRLIGGICYRPYAAQRFGEIAFCAVNSNEQV 156
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BLAST of mRNA_H-elongata_contig70642.14727.1 vs. uniprot
Match: A0A7J7P1U4_9MAGN (N-acetyltransferase domain-containing protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7P1U4_9MAGN)

HSP 1 Score: 89.0 bits (219), Expect = 5.330e-20
Identity = 41/62 (66.13%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:    1 IFHQQLPKMPKEYIVRLVFDRKHRSIVLIKKGVPIGGITYRHFVAQKFGEIAFCAVASNCQV 186
            IF +QLP MPKEYIVRLV DR H+S+V+I+    +GGITYR F  QKFGEI+FCA+AS  QV
Sbjct:  167 IFARQLPNMPKEYIVRLVMDRNHKSLVVIRTNQVVGGITYRPFTGQKFGEISFCAIASGEQV 228
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BLAST of mRNA_H-elongata_contig70642.14727.1 vs. uniprot
Match: W1P3C7_AMBTC (Histone acetyltransferase n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1P3C7_AMBTC)

HSP 1 Score: 90.9 bits (224), Expect = 7.040e-20
Identity = 41/62 (66.13%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    1 IFHQQLPKMPKEYIVRLVFDRKHRSIVLIKKGVPIGGITYRHFVAQKFGEIAFCAVASNCQV 186
            IF +QLP MPKEYIVRLV DR H+S+++IK    +GGITYR +V QKFGEIAFCA+A++ QV
Sbjct:  244 IFARQLPNMPKEYIVRLVMDRSHKSVMIIKNNQVVGGITYRPYVGQKFGEIAFCAIATDEQV 305
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BLAST of mRNA_H-elongata_contig70642.14727.1 vs. uniprot
Match: A0A2J7ZP77_9CHLO (Histone acetyltransferase n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZP77_9CHLO)

HSP 1 Score: 90.5 bits (223), Expect = 8.010e-20
Identity = 45/63 (71.43%), Postives = 51/63 (80.95%), Query Frame = 1 
Query:    1 IFHQQLPKMPKEYIVRLVFDRKHRSIVLIKK-GVPIGGITYRHFVAQKFGEIAFCAVASNCQV 186
            IF +QLP MPKEYIVRLVFDR+HRS+ L+K+ G  IGGITYR F  Q FGEIAFCAV S+ QV
Sbjct:  127 IFSKQLPNMPKEYIVRLVFDRRHRSVALLKRNGAVIGGITYRAFHQQAFGEIAFCAVTSHEQV 189
[Close]
BLAST of mRNA_H-elongata_contig70642.14727.1 vs. uniprot
Match: A0A835T2F5_9CHLO (Histone acetyltransferase n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835T2F5_9CHLO)

HSP 1 Score: 90.5 bits (223), Expect = 8.730e-20
Identity = 45/63 (71.43%), Postives = 51/63 (80.95%), Query Frame = 1 
Query:    1 IFHQQLPKMPKEYIVRLVFDRKHRSIVLIKK-GVPIGGITYRHFVAQKFGEIAFCAVASNCQV 186
            IF +QLP MPKEYIVRLVFDR+HRS+ L+K+ G  IGGITYR F  Q FGEIAFCAV S+ QV
Sbjct:  103 IFSKQLPNMPKEYIVRLVFDRRHRSVALLKRNGTVIGGITYRAFHEQAFGEIAFCAVTSHEQV 165
[Close]
BLAST of mRNA_H-elongata_contig70642.14727.1 vs. uniprot
Match: UPI0007EFD200 (histone acetyltransferase GCN5-like n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EFD200)

HSP 1 Score: 90.5 bits (223), Expect = 8.880e-20
Identity = 39/62 (62.90%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 IFHQQLPKMPKEYIVRLVFDRKHRSIVLIKKGVPIGGITYRHFVAQKFGEIAFCAVASNCQV 186
            IF +QLP MPKEYIVRLV DR H+S++L+++   +GGITYR +++QKFGEIAFCA+ S+ QV
Sbjct:  171 IFARQLPNMPKEYIVRLVMDRSHKSVMLVRRNTVVGGITYRPYLSQKFGEIAFCAITSDEQV 232
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70642.14727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTY1_ECTSI4.820e-3091.94Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZI58_9STRA1.130e-2070.97Histone acetyltransferase n=2 Tax=Tribonema minus ... [more]
D8THL6_VOLCA1.190e-2073.02Histone acetyltransferase n=1 Tax=Volvox carteri f... [more]
A0A8J4B5I2_9CHLO1.760e-2073.02Histone acetyltransferase n=2 Tax=Volvox TaxID=306... [more]
A0A482RRZ5_9ARCH2.150e-2067.74GNAT family N-acetyltransferase n=1 Tax=archaeon T... [more]
A0A7J7P1U4_9MAGN5.330e-2066.13N-acetyltransferase domain-containing protein n=1 ... [more]
W1P3C7_AMBTC7.040e-2066.13Histone acetyltransferase n=1 Tax=Amborella tricho... [more]
A0A2J7ZP77_9CHLO8.010e-2071.43Histone acetyltransferase n=1 Tax=Tetrabaena socia... [more]
A0A835T2F5_9CHLO8.730e-2071.43Histone acetyltransferase n=1 Tax=Chlamydomonas sc... [more]
UPI0007EFD2008.880e-2062.90histone acetyltransferase GCN5-like n=1 Tax=Daucus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70642contigH-elongata_contig70642:2844..3029 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.7
Seed ortholog evalue1.1e-19
Seed eggNOG ortholog2880.D8LTY1
Preferred nameHAG1
KEGG koko:K06062
KEGG Pathwayko04330,ko04919,ko05166,ko05203,map04330,map04919,map05166,map05203
GOsGO:0000003,GO:0000123,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004402,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006325,GO:0006355,GO:0006464,GO:0006473,GO:0006475,GO:0006807,GO:0006996,GO:0007275,GO:0008080,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009628,GO:0009653,GO:0009791,GO:0009889,GO:0009891,GO:0009893,GO:0009908,GO:0009987,GO:0010015,GO:0010321,GO:0010468,GO:0010484,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0022414,GO:0022622,GO:0031248,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034212,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043543,GO:0043966,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045893,GO:0045935,GO:0048364,GO:0048367,GO:0048518,GO:0048522,GO:0048580,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051239,GO:0051252,GO:0051254,GO:0051276,GO:0060255,GO:0061458,GO:0061733,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090567,GO:0097159,GO:0099402,GO:1901363,GO:1901564,GO:1902493,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1905392,GO:1990234,GO:2000026,GO:2000112,GO:2001141
EggNOG free text desc.histone acetyltransferase activity
EggNOG OGsCOG5076@1,KOG1472@2759
EC2.3.1.48
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03021,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size186
Cds size162
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931105.4444835-UTR-H-elongata_contig70642:2843..28671622931105.4444835-UTR-H-elongata_contig70642:2843..2867Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70642 2844..2867 +
1691679700.2345448-UTR-H-elongata_contig70642:2843..28671691679700.2345448-UTR-H-elongata_contig70642:2843..2867Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70642 2844..2867 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931105.463884-CDS-H-elongata_contig70642:2867..30291622931105.463884-CDS-H-elongata_contig70642:2867..3029Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70642 2868..3029 +
1691679700.2457507-CDS-H-elongata_contig70642:2867..30291691679700.2457507-CDS-H-elongata_contig70642:2867..3029Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70642 2868..3029 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70642.14727.1prot_H-elongata_contig70642.14727.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70642 2868..3029 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70642.14727.1

>prot_H-elongata_contig70642.14727.1 ID=prot_H-elongata_contig70642.14727.1|Name=mRNA_H-elongata_contig70642.14727.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
MPKEYIVRLVFDRKHRSIVLIKKGVPIGGITYRHFVAQKFGEIAFCAVAS
NCQV
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mRNA from alignment at H-elongata_contig70642:2844..3029+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70642.14727.1 ID=mRNA_H-elongata_contig70642.14727.1|Name=mRNA_H-elongata_contig70642.14727.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=186bp|location=Sequence derived from alignment at H-elongata_contig70642:2844..3029+ (Himanthalia elongata Himel1 dioecious)
ATCTTCCACCAGCAACTGCCGAAGATGCCCAAAGAGTACATCGTTCGCCT
GGTATTTGACCGCAAGCACCGCTCGATCGTCCTCATCAAGAAGGGAGTCC
CCATTGGCGGGATCACCTACCGCCACTTCGTCGCACAGAAGTTCGGCGAG
ATTGCCTTCTGTGCCGTGGCCAGTAACTGTCAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig70642:2844..3029+

>mRNA_H-elongata_contig70642.14727.1 ID=mRNA_H-elongata_contig70642.14727.1|Name=mRNA_H-elongata_contig70642.14727.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig70642:2844..3029+ (Himanthalia elongata Himel1 dioecious)
ATGCCCAAAGAGTACATCGTTCGCCTGGTATTTGACCGCAAGCACCGCTC
GATCGTCCTCATCAAGAAGGGAGTCCCCATTGGCGGGATCACCTACCGCC
ACTTCGTCGCACAGAAGTTCGGCGAGATTGCCTTCTGTGCCGTGGCCAGT
AACTGTCAGGTAATGCCCAAAGAGTACATCGTTCGCCTGGTATTTGACCG
CAAGCACCGCTCGATCGTCCTCATCAAGAAGGGAGTCCCCATTGGCGGGA
TCACCTACCGCCACTTCGTCGCACAGAAGTTCGGCGAGATTGCCTTCTGT
GCCGTGGCCAGTAACTGTCAGGTA
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